IslandPath Analysis: Neisseria meningitidis FAM18



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.80   STD DEV: 7.07
Neisseria meningitidis FAM18, complete genome - 1..2194961
1917 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
161	 54.30	0	173623..174180	-	185	121634062	frr	NMC0178	-	ribosome recycling factor
162	 61.26	+1	174361..175488	-	375	121634063	-	NMC0179	-	putative inner membrane protein
163	 60.33	+1	175739..176227	+	162	121634064	-	NMC0180	-	putative inner membrane protein
164	 57.05	0	176323..176946	+	207	121634065	gidB	NMC0181	-	glucose-inhibited division protein B
165	 58.91	+1	177045..177818	+	257	121634066	-	NMC0182	-	hypothetical protein
166	 57.78	0	178616..179200	-	194	121634067	rnhB	NMC0183	-	ribonuclease HII
167	 58.33	0	179268..181163	-	631	121634068	gidA	NMC0184	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
168	 55.60	0	181438..182865	-	475	121634069	-	NMC0185	-	putative inner membrane amino-acid transport protein
169	 60.40	+1	183025..184014	+	329	121634070	pdxA	NMC0186	-	pyridoxal phosphate biosynthetic protein
170	 57.97	0	185095..187854	-	919	121634071	rne	NMC0187	-	ribonuclease E
171	 57.40	0	188347..189339	+	330	121634072	rluC	NMC0190	-	ribosomal large subunit pseudouridine synthase C
172	 58.44	0	189405..190559	+	384	121634073	lpxB	NMC0191	-	lipid-A-disaccharide synthase
173	 28.72	-2	190769..191158	-	129	121634074	-	NMC0193	-	hypothetical protein
174	 36.33	-2	191492..191791	+	99	121634075	-	NMC0194	-	hypothetical protein
175	 60.62	+1	192055..192864	-	269	121634076	dapB	NMC0195	-	dihydrodipicolinate reductase
176	 57.94	0	192874..193251	-	125	121634077	-	NMC0196	-	putative outer membrane lipoprotein
177	 49.01	0	193409..193912	+	167	121634078	fur	NMC0197	-	ferric uptake regulation protein
178	 57.85	0	193982..194707	+	241	121634079	aat	NMC0198	-	leucyl/phenylalanyl-tRNA--protein transferase
179	 57.17	0	194955..195986	-	343	121634080	gapA	NMC0199	-	glyceraldehyde 3-phosphate dehydrogenase
180	 63.69	+1	196185..197024	-	279	121634081	-	NMC0200	-	putative ferredoxin
181	 55.69	0	197173..199149	+	658	121634082	-	NMC0201	-	putative inner membrane transport protein
182	 55.83	0	202007..204397	-	796	121634083	gyrB	NMC0204	-	DNA gyrase subunit B
183	 55.83	0	204553..205539	+	328	121634084	-	NMC0205	-	putative inner membrane protein
184	 57.14	0	205627..207663	+	678	121634085	prlC	NMC0206	-	oligopeptidase A
185	 58.38	0	207939..208505	-	188	121634086	-	NMC0207	-	putative integral membrane protein
186	 49.30	0	208969..209469	-	166	121634087	-	NMC0209	-	hypothetical protein
187	 47.87	0	209923..210369	-	148	121634088	pilE	NMC0210	-	class II pilin PilE
188	 57.95	0	211530..213044	-	504	121634089	katA	NMC0211	-	catalase
189	 55.63	0	213393..214244	+	283	121634090	-	NMC0212	-	RNA polymerase sigma factor
190	 60.34	+1	216671..217888	-	405	121634091	-	NMC0214	-	putative inner membrane transport protein
191	 57.26	0	218313..219269	+	318	121634092	-	NMC0215	-	putative inner membrane transport protein
192	 60.02	+1	219511..220758	-	415	121634093	fabF	NMC0216	-	3-oxoacyl-(acyl carrier protein) synthase II
193	 47.26	0	220914..221150	-	78	121634094	acpP	NMC0217	-	acyl carrier protein
194	 53.17	0	221382..222389	+	335	121634095	pyrD	NMC0218	-	dihydroorotate dehydrogenase 2
195	 35.80	-2	222723..223046	+	107	121634096	-	NMC0220	-	hypothetical protein
196	 40.78	-1	223133..223414	+	93	121634097	-	NMC0221	-	hypothetical protein
197	 40.30	-1	223467..223940	+	157	121634098	-	NMC0222	-	hypothetical protein
198	 39.88	-1	224194..224529	+	111	121634099	-	NMC0223	-	hypothetical protein
199	 57.38	0	224709..227399	+	896	121634100	glnE	NMC0224	-	glutamate-ammonia-ligase adenylyltransferase
200	 55.99	0	227699..228391	-	230	121634101	-	NMC0225	-	hypothetical protein
201	 54.77	0	228499..229692	-	397	121634102	-	NMC0226	-	putative inner membrane transport protein
202	 58.67	0	229821..230558	-	245	121634103	-	NMC0227	-	hypothetical protein
203	 56.77	0	230545..231474	-	309	121634104	-	NMC0228	-	hypothetical protein
204	 56.94	0	231471..232118	-	215	121634105	-	NMC0229	-	hypothetical protein
205	 57.11	0	232302..234509	+	735	121634106	uvrD	NMC0230	-	DNA helicase II
206	 45.74	0	234744..235283	+	179	121634107	-	NMC0231	-	hypothetical protein
207	 30.56	-2	235473..235688	-	71	121634108	-	NMC0232	-	hypothetical protein
208	 27.50	-2	235812..236171	-	119	121634109	-	NMC0233	-	hypothetical protein
209	 36.77	-2	236224..236601	+	125	121634110	-	NMC0234	-	putative IS1016 transposase
210	 45.35	0	236755..237420	+	221	121634111	-	NMC0235	-	putative inner membrane protein
211	 48.73	0	237401..238894	+	497	121634112	-	NMC0236	-	putative inner membrane protein
212	 51.26	0	239356..239712	+	118	121634113	nuoA	NMC0237	-	NADH dehydrogenase I chain A
213	 57.14	0	239703..240185	+	160	121634114	nuoB	NMC0238	-	NADH dehydrogenase subunit B
214	 51.52	0	240198..240791	+	197	121634115	nuoC	NMC0239	-	NADH dehydrogenase subunit C
215	 54.49	0	240781..242037	+	418	121634116	nuoD	NMC0240	-	NADH dehydrogenase subunit D
216	 54.64	0	242037..242510	+	157	121634117	nuoE	NMC0241	-	NADH dehydrogenase subunit E
217	 53.07	0	242900..244201	+	433	121634118	nuoF	NMC0242	-	NADH dehydrogenase I chain F
218	 33.56	-2	244201..244638	+	145	121634119	-	NMC0243	-	hypothetical protein
219	 55.31	0	244928..247189	+	753	121634120	nuoG	NMC0244	-	NADH dehydrogenase subunit G
220	 53.00	0	247186..248268	+	360	121634121	nuoH	NMC0245	-	NADH dehydrogenase I chain H
221	 52.29	0	248349..248828	+	159	121634122	nuoI	NMC0246	-	NADH dehydrogenase subunit I
222	 53.27	0	248840..249511	+	223	121634123	nuoJ	NMC0247	-	NADH dehydrogenase I chain J
223	 47.06	0	249508..249813	+	101	121634124	nuoK	NMC0248	-	NADH dehydrogenase subunit K
224	 45.83	0	249847..250422	+	191	121634125	-	NMC0249	-	hypothetical protein
225	 39.77	-1	250546..250887	+	113	121634126	-	NMC0250	-	hypothetical protein
226	 51.41	0	250936..252960	+	674	121634127	nuoL	NMC0251	-	NADH dehydrogenase subunit L
227	 51.37	0	253049..254545	+	498	121634128	nuoM	NMC0252	-	NADH dehydrogenase subunit M
228	 55.33	0	254555..256000	+	481	121634129	nuoN	NMC0253	-	NADH dehydrogenase subunit N
229	 56.70	0	256061..256411	+	116	121634130	-	NMC0254	-	putative inner membrane protei
230	 56.86	0	256520..257416	-	298	121634131	ispA	NMC0255	-	geranyltranstransferase
231	 51.11	0	257400..257624	-	74	121634132	xseB	NMC0256	-	exodeoxyribonuclease small subunit
232	 60.71	+1	257735..258658	-	307	121634133	-	NMC0257	-	ribosome-associated GTPase
233	 59.65	+1	258663..260516	-	617	121634134	-	NMC0258	-	putative ABC transporter
234	 56.92	0	260682..261266	-	194	121634135	ruvA	NMC0259	-	Holliday junction DNA helicase motor protein
235	 57.48	0	261348..261728	-	126	121634136	-	NMC0260	-	hypothetical protein
236	 56.67	0	261728..262447	-	239	121634137	-	NMC0261	-	putative periplasmic protein
237	 59.14	+1	262577..263041	-	154	121634138	-	NMC0262	-	putative tRNA/rRNA methyltransferase
238	 58.26	0	263106..263831	-	241	121634139	-	NMC0263	-	hypothetical protein
239	 60.05	+1	263803..264573	+	256	121634140	-	NMC0264	-	putative hydrolase
240	 56.65	0	264575..265363	+	262	121634141	-	NMC0265	-	hypothetical protein
241	 22.56	-2	265817..266113	+	98	121634142	-	NMC0267	-	hypothetical protein
242	 57.37	0	266719..269019	-	766	121634143	recQ	NMC0269	-	ATP-dependent DNA helicase
243	 57.22	0	269085..269867	-	260	121634144	trpC	NMC0270	-	indole-3-glycerol-phosphate synthase
244	 61.96	+1	269918..270874	-	318	121634145	-	NMC0271	-	hypothetical protein
245	 54.65	0	271007..272545	-	512	121634146	-	NMC0272	-	putative inner membrane protein
246	 55.94	0	273004..273702	+	232	121634147	-	NMC0273	-	putative thiol:disulphide interchange protein
247	 54.83	0	273759..274763	-	334	121634148	-	NMC0274	-	hypothetical protein
248	 59.15	+1	274833..277241	+	802	121634149	-	NMC0275	-	putative outer membrane solvent tolerance protein
249	 57.14	0	277343..278560	+	405	121634150	-	NMC0276	-	putative rotamase
250	 40.45	-1	280407..281615	+	402	121634151	-	NMC0277	-	hypothetical protein
251	 41.03	-1	281636..281947	+	103	121634152	-	NMC0278	-	hypothetical protein
252	 36.32	-2	281951..282151	+	66	121634153	-	NMC0279	-	hypothetical protein
253	 45.89	0	282378..282608	+	76	121634154	-	NMC0280	-	putative periplasmic protein
254	 42.90	-1	282636..282938	+	100	121634155	-	NMC0281	-	putative inner membrane protein
255	 24.82	-2	283053..283334	+	93	121634156	-	NMC0282	-	hypothetical protein
256	 47.37	0	283285..284916	+	543	121634157	tspB	NMC0283	-	TspB protein
257	 44.91	0	285219..285503	+	94	121634158	-	NMC0284	-	putative inner membrane protein
258	 44.70	-1	285504..286691	+	395	121634159	-	NMC0285	-	hypothetical protein
259	 39.29	-1	286906..287862	+	318	121634160	-	NMC0286	-	putative invertase/transposase
260	 55.08	0	288298..290178	-	626	121634161	-	NMC0288	-	hypothetical protein
51.80	MEAN

7.07	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.