IslandPath Analysis: Neisseria meningitidis FAM18



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.80   STD DEV: 7.07
Neisseria meningitidis FAM18, complete genome - 1..2194961
1917 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1771	 35.19	-2	2040934..2041203	+	89	121635672	-	NMC1994	-	hypothetical protein
1772	 37.78	-1	2041364..2041813	-	149	121635673	-	NMC1995	-	putative pilin
1773	 54.62	0	2041901..2042365	-	154	121635674	-	NMC1996	-	putative DNA transport competence protein
1774	 48.10	0	2048049..2048759	-	236	121635675	-	NMC1997	-	putative psedouridine synthase
1775	 52.83	0	2048734..2049246	-	170	121635676	coaD	NMC1998	-	phosphopantetheine adenylyltransferase
1776	 54.68	0	2049370..2050053	-	227	121635677	-	NMC1999	-	putative integral membrane protein
1777	 55.06	0	2050210..2050476	-	88	121635678	-	NMC2000	-	hypothetical protein
1778	 60.93	+1	2050551..2051021	-	156	121635679	-	NMC2001	-	SPOUT methyltransferase superfamily protein
1779	 54.78	0	2051075..2051461	-	128	121635680	-	NMC2002	-	hypothetical protein
1780	 59.74	+1	2051520..2052125	-	201	121635681	-	NMC2003	-	hypothetical protein
1781	 55.50	0	2052122..2052721	-	199	121635682	-	NMC2004	-	hypothetical protein
1782	 61.08	+1	2052750..2054342	-	530	121635683	-	NMC2005	-	putative permease
1783	 59.81	+1	2054682..2056067	+	461	121635684	gntP	NMC2006	-	gluconate permease
1784	 58.19	0	2056087..2056605	+	172	121635685	-	NMC2007	-	putative glucokinase
1785	 54.90	0	2056944..2057861	-	305	121635686	thrB	NMC2008	-	homoserine kinase
1786	 54.93	0	2057898..2058647	-	249	121635687	ubiG	NMC2009	-	3-demethylubiquinone-9 3-methyltransferase
1787	 57.09	0	2058778..2060019	+	413	121635688	-	NMC2010	-	amino-acid transport protein
1788	 56.37	0	2060077..2061135	+	352	121635689	-	NMC2011	-	LgtG
1789	 53.96	0	2061202..2062854	-	550	121635690	-	NMC2012	-	putative integral membrane protein
1790	 35.31	-2	2063024..2063595	+	190	121635691	-	NMC2013	-	pseudogene (putative acetyltransferase)
1791	 55.85	0	2063592..2064155	+	187	121635692	-	NMC2014	-	D,D-heptose 1,7-bisphosphate phosphatase
1792	 55.51	0	2064185..2064928	+	247	121635693	nlaB	NMC2015	-	1-acyl-SN-glycerol-3-phosphate acyltransferase
1793	 60.32	+1	2064925..2065617	+	230	121635694	-	NMC2016	-	hypothetical protein
1794	 61.15	+1	2067123..2067920	+	265	121635695	truA	NMC2017	-	tRNA pseudouridine synthase A
1795	 45.00	0	2068043..2068282	+	79	121635696	-	NMC2018	-	hypothetical protein
1796	 47.84	0	2068270..2068593	+	107	121635697	chpA	NMC2019	-	PEMK-like protein
1797	 48.31	0	2069294..2070508	+	404	121635698	porB	NMC2020	-	porin, major outer membrane protein P.I
1798	 57.41	0	2072542..2074443	-	633	121635699	thiC	NMC2021	-	thiamine biosynthesis protein ThiC
1799	 57.42	0	2075041..2075916	+	291	121635700	-	NMC2022	-	hypothetical protein
1800	 57.19	0	2075925..2076863	+	312	121635701	-	NMC2023	-	ABC-transport system ATP-binding protein
1801	 57.77	0	2078138..2079913	-	591	121635702	ptsI	NMC2024	-	phosphoenolpyruvate-protein phosphotransferase
1802	 56.67	0	2079913..2080182	-	89	121635703	ptsH	NMC2025	-	sugar transport PTS system phosphocarrier protein HPr
1803	 58.22	0	2080251..2080688	-	145	121635704	-	NMC2026	-	sugar transport PTS system IIA component
1804	 55.50	0	2080769..2081332	-	187	121635705	hpt	NMC2027	-	hypoxanthine-guanine phosphoribosyltransferase
1805	 56.12	0	2081401..2082225	-	274	121635706	-	NMC2028	-	DNA ligase
1806	 56.16	0	2082284..2082949	+	221	121635707	-	NMC2029	-	putative hydrolase
1807	 53.84	0	2083156..2084940	-	594	121635708	-	NMC2030	-	putative periplasmic protein
1808	 48.76	0	2085279..2086082	-	267	121635709	petC	NMC2032	-	cytochrome C1 precursor
1809	 50.81	0	2086082..2087431	-	449	121635710	petB	NMC2033	-	cytochrome B
1810	 56.70	0	2087450..2088031	-	193	121635711	petA	NMC2034	-	ubiquinol-cytochrome c reductase iron-sulfur subunit
1811	 51.11	0	2088154..2088963	-	269	121635712	-	NMC2035	-	hypothetical protein
1812	 52.90	0	2089034..2089963	+	309	121635713	metR	NMC2036	-	putative transcriptional activator protein METR
1813	 53.44	0	2090219..2090611	-	130	121635714	rpsI	NMC2037	-	30S ribosomal protein S9
1814	 50.69	0	2090621..2091052	-	143	121635715	rplM	NMC2038	-	50S ribosomal protein L13
1815	 55.23	0	2091415..2091720	-	101	121635716	-	NMC2039	-	hypothetical protein
1816	 51.52	0	2091731..2092060	-	109	121635717	-	NMC2040	-	hypothetical protein
1817	 56.36	0	2092115..2093104	-	329	121635718	gpsA	NMC2041	-	glycerol-3-phosphate dehydrogenase
1818	 56.64	0	2093227..2095929	-	900	121635719	ppc	NMC2042	-	phosphoenolpyruvate carboxylase
1819	 58.65	0	2095918..2096865	+	315	121635720	thiF	NMC2043	-	ThiF protein
1820	 56.44	0	2097563..2097787	-	74	121635721	slyX	NMC2044	-	hypothetical protein
1821	 58.32	0	2097788..2099176	-	462	121635722	-	NMC2045	-	putative integral membrane protein
1822	 54.95	0	2099262..2100533	-	423	121635723	-	NMC2046	-	hemk protein
1823	 61.14	+1	2100598..2102082	-	494	121635724	tldD	NMC2047	-	TLDD protein
1824	 59.15	+1	2102430..2103653	+	407	121635725	-	NMC2048	-	putative permease
1825	 61.31	+1	2103650..2104750	+	366	121635726	-	NMC2049	-	putative oxidoreductase
1826	 62.62	+1	2104771..2105388	+	205	121635727	thiE	NMC2050	-	thiamin-phosphate pyrophosphorylase
1827	 57.95	0	2105811..2106005	+	64	121635728	-	NMC2051	-	hypothetical protein
1828	 61.09	+1	2106219..2107007	+	262	121635729	thiG	NMC2052	-	thiazole synthase
1829	 58.79	0	2107770..2108594	-	274	121635730	-	NMC2053	-	putative periplasmic protein
1830	 60.09	+1	2108707..2110485	-	592	121635731	birA	NMC2054	-	bifunctional biotin--[acetyl-CoA-carboxylase] ligase/pantothenate kinase
1831	 59.13	+1	2110482..2110919	-	145	121635732	-	NMC2055	-	putative transferase
1832	 57.43	0	2111628..2112482	+	284	121635733	folD	NMC2056	-	methylenetetrahydrofolate dehydrogenase/cyclohydrolase
1833	 51.20	0	2112544..2113125	-	193	121635734	-	NMC2057	-	putative integral membrane protein
1834	 57.71	0	2113301..2114416	+	371	121635735	-	NMC2058	-	aspartate-semialdehyde dehydrogenase
1835	 58.00	0	2114509..2115039	-	176	121635736	-	NMC2059	-	hypothetical protein
1836	 53.91	0	2115050..2115394	-	114	121635737	-	NMC2060	-	putative integral membrane protein
1837	 53.08	0	2115381..2116160	-	259	121635738	-	NMC2061	-	putative nuclease
1838	 48.33	0	2116243..2118342	-	699	121635739	cysS	NMC2062	-	cysteinyl-tRNA synthetase
1839	 39.33	-1	2118352..2119401	-	349	121635740	-	NMC2064	-	putative ATP-binding protein
1840	 56.97	0	2119484..2120638	-	384	121635741	obgE	NMC2065	-	GTPase ObgE
1841	 60.17	+1	2121196..2121549	+	117	121635742	cybB	NMC2066	-	putative cytochrome B561
1842	 55.69	0	2121584..2122594	-	336	121635743	-	NMC2068	-	hypothetical protein
1843	 52.59	0	2122506..2122853	+	115	121635744	-	NMC2069	-	hypothetical protein
1844	 59.60	+1	2122858..2123451	+	197	121635745	gmhA	NMC2070	-	phosphoheptose isomerase
1845	 59.61	+1	2123515..2124123	+	202	121635746	-	NMC2071	-	putative lipoprotein
1846	 56.90	0	2124188..2124781	+	197	121635747	-	NMC2072	-	putative periplasmic protein
1847	 57.44	0	2124821..2125600	+	259	121635748	map	NMC2073	-	methionine aminopeptidase
1848	 47.00	0	2125755..2126054	+	99	121635749	-	NMC2074	-	hypothetical protein
1849	 49.91	0	2126106..2126666	+	186	121635750	-	NMC2075	-	putative adhesin component
1850	 56.78	0	2126854..2128320	-	488	121635751	mqo	NMC2076	-	malate:quinone oxidoreductase
1851	 54.99	0	2128857..2129447	-	196	121635752	-	NMC2077	-	hypothetical protein
1852	 56.36	0	2129508..2130167	-	219	121635753	-	NMC2078	-	hypothetical protein
1853	 54.76	0	2130167..2130376	+	69	121635754	-	NMC2079	-	putative integral membrane protein
1854	 52.13	0	2130577..2131305	+	242	121635755	rpsB	NMC2080	-	30S ribosomal protein S2
1855	 52.40	0	2131455..2132288	+	277	121635756	tsf	NMC2081	-	elongation factor Ts
1856	 52.78	0	2132505..2133224	+	239	121635757	pyrH	NMC2082	-	uridylate kinase
1857	 46.83	0	2133408..2134370	+	320	121635758	mafA	NMC2083	-	adhesin
1858	 46.20	0	2134410..2135792	+	460	121635759	mafB	NMC2084	-	adhesin
1859	 25.47	-2	2135789..2136106	+	105	121635760	-	NMC2085	-	hypothetical protein
1860	 28.50	-2	2136854..2137060	+	68	121635761	-	NMC2087	-	hypothetical protein
1861	 39.29	-1	2137192..2137443	+	83	121635762	-	NMC2088	-	hypothetical protein
1862	 30.63	-2	2137479..2137811	+	110	121635763	-	NMC2089	-	hypothetical protein
1863	 48.33	0	2138062..2139048	+	328	121635764	-	NMC2090	-	mafb protein (fragment)
1864	 35.92	-2	2139130..2139477	+	115	121635765	-	NMC2091	-	hypothetical protein
1865	 24.07	-2	2139480..2139803	+	107	121635766	-	NMC2092	-	hypothetical protein
1866	 28.12	-2	2139841..2140185	+	114	121635767	-	NMC2093	-	hypothetical protein
1867	 26.94	-2	2140938..2141156	+	72	121635768	-	NMC2095	-	hypothetical protein
1868	 25.28	-2	2141153..2141512	+	119	121635769	-	NMC2096	-	hypothetical protein
1869	 27.23	-2	2141588..2141800	+	70	121635770	-	NMC2097	-	hypothetical protein
1870	 28.01	-2	2142065..2142421	+	118	121635771	-	NMC2099	-	hypothetical protein
51.80	MEAN

7.07	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.