IslandPathversion 1.0

IslandPath Analysis: Neisseria meningitidis FAM18



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.80 STD DEV: 7.07
Neisseria meningitidis FAM18, complete genome - 1..2194961
1917 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1729	 55.03	0	1976585..1979017	+	810	121635630	hpuB	NMC1947	-	haemoglobin-haptoglobin-utilization protein
1730	 54.80	0	1979605..1981239	-	544	121635631	groEL	NMC1948	-	chaperonin GroEL
1731	 51.38	0	1981332..1981658	-	108	121635632	groES	NMC1949	-	co-chaperonin GroES
1732	 47.86	0	1981852..1982505	+	217	121635633	-	NMC1950	-	insertion element IS1016 transposase
1733	 54.47	0	1982622..1984253	+	543	121635634	-	NMC1951	-	putative sodium-dependent inner membrane transport protein
1734	 55.90	0	1984378..1985622	-	414	121635635	lysA	NMC1952	-	diaminopimelate decarboxylase
1735	 56.14	0	1985633..1985803	-	56	121635636	-	NMC1953	-	putative lipoprotein
1736	 53.40	0	1985874..1986197	+	107	121635637	cyaY	NMC1954	-	frataxin-like protein
1737	 45.95	0	1986228..1986647	+	139	121635638	-	NMC1955	-	hypothetical protein
1738	 54.44	0	1986669..1987175	+	168	121635639	-	NMC1956	-	S-ribosylhomocysteinase
1739	 57.50	0	1987321..1990113	+	930	121635640	polA	NMC1957	-	DNA polymerase I
1740	 45.78	0	1991459..1992181	+	240	121635641	-	NMC1958	-	hypothetical protein
1741	 50.79	0	1992290..1996654	-	1454	121635642	iga2	NMC1959	-	IgA-specific serine endopeptidase
1742	 56.94	0	1996788..1997219	-	143	121635643	-	NMC1960	-	putative inner membrane protein
1743	 53.85	0	1997216..1997371	-	51	121635644	-	NMC1961	-	hypothetical protein
1744	 59.69	+1	1997502..1998848	+	448	121635645	trmE	NMC1962	-	tRNA modification GTPase TrmE
1745	 53.33	0	2000909..2003053	+	714	121635646	fetA	NMC1963	-	putative iron-regulated outer membrane protein
1746	 54.44	0	2003309..2004322	+	337	121635647	fetB	NMC1964	-	putative membrane transport solute-binding protein
1747	 57.19	0	2004789..2005622	+	277	121635648	-	NMC1965	-	putative inner membrane transport protein
1748	 54.15	0	2005612..2006586	+	324	121635649	-	NMC1966	-	putative inner membrane transport protein
1749	 62.36	+1	2006631..2007257	+	208	121635650	-	NMC1967	-	hypothetical protein
1750	 58.89	+1	2007342..2008100	+	252	121635651	-	NMC1968	-	putative ABC transporter ATP-binding subunit
1751	 48.20	0	2008404..2009600	+	398	121635652	-	NMC1969	-	putative adhesin/invasin
1752	 56.93	0	2009666..2010004	-	112	121635653	glnB	NMC1971	-	nitrogen regulatory protein P-II 1
1753	 55.76	0	2010140..2014117	+	1325	121635654	purL	NMC1972	-	phosphoribosylformylglycinamidine synthase
1754	 59.29	+1	2014212..2014970	+	252	121635655	-	NMC1973	-	hydroxyacylglutathione hydrolase
1755	 58.01	0	2019991..2021445	+	484	121635656	-	NMC1976	-	hypothetical protein
1756	 57.58	0	2021531..2022532	-	333	121635657	hslO	NMC1977	-	Hsp33-like chaperonin
1757	 60.58	+1	2022684..2023439	+	251	121635658	-	NMC1978	-	hypothetical protein
1758	 52.05	0	2023458..2023676	+	72	121635659	-	NMC1979	-	hypothetical protein
1759	 57.10	0	2023821..2024165	+	114	121635660	-	NMC1980	-	hypothetical protein
1760	 58.01	0	2024165..2024857	+	230	121635661	-	NMC1981	-	hypothetical protein
1761	 61.02	+1	2024924..2026144	+	406	121635662	argJ	NMC1982	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
1762	 61.38	+1	2026291..2027613	+	440	121635663	-	NMC1983	-	hypothetical protein
1763	 56.54	0	2027802..2029193	+	463	121635664	-	NMC1984	-	ATP-dependent DNA helicase
1764	 42.91	-1	2029294..2030421	+	375	121635665	-	NMC1985	-	hypothetical protein
1765	 49.21	0	2030602..2032176	+	524	121635666	-	NMC1986	-	putative inner membrane protein
1766	 56.73	0	2032242..2035541	+	1099	121635667	-	NMC1987	-	putative DNA helicase
1767	 37.73	-1	2035564..2035950	-	128	121635668	vsr	NMC1990	-	patch repair protein
1768	 36.90	-2	2035990..2037672	-	560	121635669	-	NMC1991	-	hypothetical protein
1769	 40.72	-1	2037650..2038705	-	351	121635670	-	NMC1992	-	modification methylase (cytosine-specific DNA methylase)
1770	 51.35	0	2039326..2040291	+	321	121635671	-	NMC1993	-	insertion element IS1655 transposase
1771	 35.19	-2	2040934..2041203	+	89	121635672	-	NMC1994	-	hypothetical protein
1772	 37.78	-1	2041364..2041813	-	149	121635673	-	NMC1995	-	putative pilin
1773	 54.62	0	2041901..2042365	-	154	121635674	-	NMC1996	-	putative DNA transport competence protein
1774	 48.10	0	2048049..2048759	-	236	121635675	-	NMC1997	-	putative psedouridine synthase
1775	 52.83	0	2048734..2049246	-	170	121635676	coaD	NMC1998	-	phosphopantetheine adenylyltransferase
1776	 54.68	0	2049370..2050053	-	227	121635677	-	NMC1999	-	putative integral membrane protein
1777	 55.06	0	2050210..2050476	-	88	121635678	-	NMC2000	-	hypothetical protein
1778	 60.93	+1	2050551..2051021	-	156	121635679	-	NMC2001	-	SPOUT methyltransferase superfamily protein
1779	 54.78	0	2051075..2051461	-	128	121635680	-	NMC2002	-	hypothetical protein
1780	 59.74	+1	2051520..2052125	-	201	121635681	-	NMC2003	-	hypothetical protein
1781	 55.50	0	2052122..2052721	-	199	121635682	-	NMC2004	-	hypothetical protein
1782	 61.08	+1	2052750..2054342	-	530	121635683	-	NMC2005	-	putative permease
1783	 59.81	+1	2054682..2056067	+	461	121635684	gntP	NMC2006	-	gluconate permease
1784	 58.19	0	2056087..2056605	+	172	121635685	-	NMC2007	-	putative glucokinase
1785	 54.90	0	2056944..2057861	-	305	121635686	thrB	NMC2008	-	homoserine kinase
1786	 54.93	0	2057898..2058647	-	249	121635687	ubiG	NMC2009	-	3-demethylubiquinone-9 3-methyltransferase
1787	 57.09	0	2058778..2060019	+	413	121635688	-	NMC2010	-	amino-acid transport protein
1788	 56.37	0	2060077..2061135	+	352	121635689	-	NMC2011	-	LgtG
1789	 53.96	0	2061202..2062854	-	550	121635690	-	NMC2012	-	putative integral membrane protein
1790	 35.31	-2	2063024..2063595	+	190	121635691	-	NMC2013	-	pseudogene (putative acetyltransferase)
1791	 55.85	0	2063592..2064155	+	187	121635692	-	NMC2014	-	D,D-heptose 1,7-bisphosphate phosphatase
1792	 55.51	0	2064185..2064928	+	247	121635693	nlaB	NMC2015	-	1-acyl-SN-glycerol-3-phosphate acyltransferase
1793	 60.32	+1	2064925..2065617	+	230	121635694	-	NMC2016	-	hypothetical protein
1794	 61.15	+1	2067123..2067920	+	265	121635695	truA	NMC2017	-	tRNA pseudouridine synthase A
1795	 45.00	0	2068043..2068282	+	79	121635696	-	NMC2018	-	hypothetical protein
1796	 47.84	0	2068270..2068593	+	107	121635697	chpA	NMC2019	-	PEMK-like protein
1797	 48.31	0	2069294..2070508	+	404	121635698	porB	NMC2020	-	porin, major outer membrane protein P.I
1798	 57.41	0	2072542..2074443	-	633	121635699	thiC	NMC2021	-	thiamine biosynthesis protein ThiC
1799	 57.42	0	2075041..2075916	+	291	121635700	-	NMC2022	-	hypothetical protein
1800	 57.19	0	2075925..2076863	+	312	121635701	-	NMC2023	-	ABC-transport system ATP-binding protein
1801	 57.77	0	2078138..2079913	-	591	121635702	ptsI	NMC2024	-	phosphoenolpyruvate-protein phosphotransferase
1802	 56.67	0	2079913..2080182	-	89	121635703	ptsH	NMC2025	-	sugar transport PTS system phosphocarrier protein HPr
1803	 58.22	0	2080251..2080688	-	145	121635704	-	NMC2026	-	sugar transport PTS system IIA component
1804	 55.50	0	2080769..2081332	-	187	121635705	hpt	NMC2027	-	hypoxanthine-guanine phosphoribosyltransferase
1805	 56.12	0	2081401..2082225	-	274	121635706	-	NMC2028	-	DNA ligase
1806	 56.16	0	2082284..2082949	+	221	121635707	-	NMC2029	-	putative hydrolase
1807	 53.84	0	2083156..2084940	-	594	121635708	-	NMC2030	-	putative periplasmic protein
1808	 48.76	0	2085279..2086082	-	267	121635709	petC	NMC2032	-	cytochrome C1 precursor
1809	 50.81	0	2086082..2087431	-	449	121635710	petB	NMC2033	-	cytochrome B
1810	 56.70	0	2087450..2088031	-	193	121635711	petA	NMC2034	-	ubiquinol-cytochrome c reductase iron-sulfur subunit
1811	 51.11	0	2088154..2088963	-	269	121635712	-	NMC2035	-	hypothetical protein
1812	 52.90	0	2089034..2089963	+	309	121635713	metR	NMC2036	-	putative transcriptional activator protein METR
1813	 53.44	0	2090219..2090611	-	130	121635714	rpsI	NMC2037	-	30S ribosomal protein S9
1814	 50.69	0	2090621..2091052	-	143	121635715	rplM	NMC2038	-	50S ribosomal protein L13
1815	 55.23	0	2091415..2091720	-	101	121635716	-	NMC2039	-	hypothetical protein
1816	 51.52	0	2091731..2092060	-	109	121635717	-	NMC2040	-	hypothetical protein
1817	 56.36	0	2092115..2093104	-	329	121635718	gpsA	NMC2041	-	glycerol-3-phosphate dehydrogenase
1818	 56.64	0	2093227..2095929	-	900	121635719	ppc	NMC2042	-	phosphoenolpyruvate carboxylase
1819	 58.65	0	2095918..2096865	+	315	121635720	thiF	NMC2043	-	ThiF protein
1820	 56.44	0	2097563..2097787	-	74	121635721	slyX	NMC2044	-	hypothetical protein
1821	 58.32	0	2097788..2099176	-	462	121635722	-	NMC2045	-	putative integral membrane protein
1822	 54.95	0	2099262..2100533	-	423	121635723	-	NMC2046	-	hemk protein
1823	 61.14	+1	2100598..2102082	-	494	121635724	tldD	NMC2047	-	TLDD protein
1824	 59.15	+1	2102430..2103653	+	407	121635725	-	NMC2048	-	putative permease
1825	 61.31	+1	2103650..2104750	+	366	121635726	-	NMC2049	-	putative oxidoreductase
1826	 62.62	+1	2104771..2105388	+	205	121635727	thiE	NMC2050	-	thiamin-phosphate pyrophosphorylase
1827	 57.95	0	2105811..2106005	+	64	121635728	-	NMC2051	-	hypothetical protein
1828	 61.09	+1	2106219..2107007	+	262	121635729	thiG	NMC2052	-	thiazole synthase
51.80	MEAN

7.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.