IslandPathversion 1.0

IslandPath Analysis: Neisseria meningitidis FAM18



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.80 STD DEV: 7.07
Neisseria meningitidis FAM18, complete genome - 1..2194961
1917 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1692	 45.51	0	1940695..1941228	-	177	121635593	atpH	NMC1909	-	F0F1 ATP synthase subunit delta
1693	 51.80	0	1941233..1941703	-	156	121635594	atpF	NMC1910	-	F0F1 ATP synthase subunit B
1694	 49.79	0	1941774..1942010	-	78	121635595	atpE	NMC1911	-	F0F1 ATP synthase subunit C
1695	 50.29	0	1942067..1942933	-	288	121635596	atpB	NMC1912	-	F0F1 ATP synthase subunit A
1696	 48.02	0	1942923..1943276	-	117	121635597	atpI	NMC1913	-	putative ATP synthase I
1697	 49.85	0	1943644..1943982	-	112	121635598	-	NMC1914	-	hypothetical protein
1698	 56.91	0	1944117..1944977	-	286	121635599	-	NMC1915	-	putative chromosome segregation proteins
1699	 56.10	0	1945033..1945704	+	223	121635600	-	NMC1916	-	aromatic acid decarboxylase
1700	 55.79	0	1945766..1946629	-	287	121635601	-	NMC1917	-	putative lipoprotein
1701	 57.21	0	1946788..1947474	-	228	121635602	-	NMC1918	-	putative inner membrane transport protein
1702	 57.86	0	1947477..1948214	-	245	121635603	-	NMC1919	-	putative ABC transport ATP-binding subunit
1703	 59.47	+1	1948745..1950592	+	615	121635604	-	NMC1920	-	putative transglycosylase
1704	 53.99	0	1950881..1951093	+	70	121635605	rpsU	NMC1921	-	30S ribosomal protein S21
1705	 56.30	0	1951267..1951671	+	134	121635606	-	NMC1922	-	hypothetical protein
1706	 54.39	0	1951996..1952451	-	151	121635607	regG	NMC1924	-	ClpXP protease specificity-enhancing factor
1707	 53.96	0	1952459..1953064	-	201	121635608	regF	NMC1925	-	putative regulator of pilE expression
1708	 58.96	+1	1953334..1955046	-	570	121635609	-	NMC1926	-	putative inner membrane protein
1709	 35.05	-2	1955151..1955792	-	213	121635610	-	NMC1927	-	cadmium resistance protein
1710	 47.69	0	1956095..1956310	-	71	161723296	rpmE	NMC1928	-	50S ribosomal protein L31
1711	 56.95	0	1956545..1957062	+	172	121635612	-	NMC1929	-	putative acetyltransferase
1712	 51.53	0	1957146..1957634	-	162	121635613	-	NMC1930	-	putative periplasmic protein
1713	 59.90	+1	1957631..1958014	-	127	121635614	-	NMC1931	-	hypothetical protein
1714	 54.24	0	1958014..1958496	-	160	121635615	-	NMC1932	-	hypothetical protein
1715	 57.73	0	1958501..1959328	-	275	121635616	-	NMC1933	-	putative periplasmic/outer membrane protein
1716	 55.12	0	1959325..1959627	-	100	121635617	-	NMC1934	-	hypothetical protein
1717	 52.28	0	1959660..1960250	-	196	121635618	-	NMC1935	-	putative periplasmic transport protein
1718	 57.50	0	1960287..1960766	-	159	121635619	-	NMC1936	-	putative outer membrane transport protein
1719	 55.47	0	1960832..1961608	-	258	121635620	-	NMC1937	-	putative ABC transport inner membrane subunit
1720	 55.40	0	1961657..1962517	-	286	121635621	-	NMC1938	-	putative ABC transport ATP-binding protein
1721	 56.24	0	1962630..1963543	+	304	121635622	-	NMC1939	-	putative transcriptional regulator
1722	 25.90	-2	1963751..1964140	+	129	121635623	-	NMC1940	-	hypothetical protein
1723	 40.30	-1	1964149..1964349	+	66	121635624	-	NMC1941	-	hypothetical protein
1724	 57.38	0	1964384..1965826	+	480	121635625	aldA	NMC1942	-	aldehyde dehydrogenase A
1725	 56.42	0	1967026..1970228	+	1067	121635626	-	NMC1943	-	putative outer membrane peptidase
1726	 57.43	0	1971412..1973208	+	598	121635627	-	NMC1944	-	putative para-aminobenzoate synthase component I
1727	 55.73	0	1973267..1974784	-	505	121635628	-	NMC1945	-	hypothetical protein
1728	 52.53	0	1975529..1976554	+	341	121635629	hpuA	NMC1946	-	haemoglobin-haptoglobin-utilization protein
1729	 55.03	0	1976585..1979017	+	810	121635630	hpuB	NMC1947	-	haemoglobin-haptoglobin-utilization protein
1730	 54.80	0	1979605..1981239	-	544	121635631	groEL	NMC1948	-	chaperonin GroEL
1731	 51.38	0	1981332..1981658	-	108	121635632	groES	NMC1949	-	co-chaperonin GroES
1732	 47.86	0	1981852..1982505	+	217	121635633	-	NMC1950	-	insertion element IS1016 transposase
1733	 54.47	0	1982622..1984253	+	543	121635634	-	NMC1951	-	putative sodium-dependent inner membrane transport protein
1734	 55.90	0	1984378..1985622	-	414	121635635	lysA	NMC1952	-	diaminopimelate decarboxylase
1735	 56.14	0	1985633..1985803	-	56	121635636	-	NMC1953	-	putative lipoprotein
1736	 53.40	0	1985874..1986197	+	107	121635637	cyaY	NMC1954	-	frataxin-like protein
1737	 45.95	0	1986228..1986647	+	139	121635638	-	NMC1955	-	hypothetical protein
1738	 54.44	0	1986669..1987175	+	168	121635639	-	NMC1956	-	S-ribosylhomocysteinase
1739	 57.50	0	1987321..1990113	+	930	121635640	polA	NMC1957	-	DNA polymerase I
1740	 45.78	0	1991459..1992181	+	240	121635641	-	NMC1958	-	hypothetical protein
1741	 50.79	0	1992290..1996654	-	1454	121635642	iga2	NMC1959	-	IgA-specific serine endopeptidase
1742	 56.94	0	1996788..1997219	-	143	121635643	-	NMC1960	-	putative inner membrane protein
1743	 53.85	0	1997216..1997371	-	51	121635644	-	NMC1961	-	hypothetical protein
1744	 59.69	+1	1997502..1998848	+	448	121635645	trmE	NMC1962	-	tRNA modification GTPase TrmE
1745	 53.33	0	2000909..2003053	+	714	121635646	fetA	NMC1963	-	putative iron-regulated outer membrane protein
1746	 54.44	0	2003309..2004322	+	337	121635647	fetB	NMC1964	-	putative membrane transport solute-binding protein
1747	 57.19	0	2004789..2005622	+	277	121635648	-	NMC1965	-	putative inner membrane transport protein
1748	 54.15	0	2005612..2006586	+	324	121635649	-	NMC1966	-	putative inner membrane transport protein
1749	 62.36	+1	2006631..2007257	+	208	121635650	-	NMC1967	-	hypothetical protein
1750	 58.89	+1	2007342..2008100	+	252	121635651	-	NMC1968	-	putative ABC transporter ATP-binding subunit
1751	 48.20	0	2008404..2009600	+	398	121635652	-	NMC1969	-	putative adhesin/invasin
1752	 56.93	0	2009666..2010004	-	112	121635653	glnB	NMC1971	-	nitrogen regulatory protein P-II 1
1753	 55.76	0	2010140..2014117	+	1325	121635654	purL	NMC1972	-	phosphoribosylformylglycinamidine synthase
1754	 59.29	+1	2014212..2014970	+	252	121635655	-	NMC1973	-	hydroxyacylglutathione hydrolase
1755	 58.01	0	2019991..2021445	+	484	121635656	-	NMC1976	-	hypothetical protein
1756	 57.58	0	2021531..2022532	-	333	121635657	hslO	NMC1977	-	Hsp33-like chaperonin
1757	 60.58	+1	2022684..2023439	+	251	121635658	-	NMC1978	-	hypothetical protein
1758	 52.05	0	2023458..2023676	+	72	121635659	-	NMC1979	-	hypothetical protein
1759	 57.10	0	2023821..2024165	+	114	121635660	-	NMC1980	-	hypothetical protein
1760	 58.01	0	2024165..2024857	+	230	121635661	-	NMC1981	-	hypothetical protein
1761	 61.02	+1	2024924..2026144	+	406	121635662	argJ	NMC1982	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
1762	 61.38	+1	2026291..2027613	+	440	121635663	-	NMC1983	-	hypothetical protein
1763	 56.54	0	2027802..2029193	+	463	121635664	-	NMC1984	-	ATP-dependent DNA helicase
1764	 42.91	-1	2029294..2030421	+	375	121635665	-	NMC1985	-	hypothetical protein
1765	 49.21	0	2030602..2032176	+	524	121635666	-	NMC1986	-	putative inner membrane protein
1766	 56.73	0	2032242..2035541	+	1099	121635667	-	NMC1987	-	putative DNA helicase
1767	 37.73	-1	2035564..2035950	-	128	121635668	vsr	NMC1990	-	patch repair protein
1768	 36.90	-2	2035990..2037672	-	560	121635669	-	NMC1991	-	hypothetical protein
1769	 40.72	-1	2037650..2038705	-	351	121635670	-	NMC1992	-	modification methylase (cytosine-specific DNA methylase)
1770	 51.35	0	2039326..2040291	+	321	121635671	-	NMC1993	-	insertion element IS1655 transposase
1771	 35.19	-2	2040934..2041203	+	89	121635672	-	NMC1994	-	hypothetical protein
1772	 37.78	-1	2041364..2041813	-	149	121635673	-	NMC1995	-	putative pilin
1773	 54.62	0	2041901..2042365	-	154	121635674	-	NMC1996	-	putative DNA transport competence protein
1774	 48.10	0	2048049..2048759	-	236	121635675	-	NMC1997	-	putative psedouridine synthase
1775	 52.83	0	2048734..2049246	-	170	121635676	coaD	NMC1998	-	phosphopantetheine adenylyltransferase
1776	 54.68	0	2049370..2050053	-	227	121635677	-	NMC1999	-	putative integral membrane protein
1777	 55.06	0	2050210..2050476	-	88	121635678	-	NMC2000	-	hypothetical protein
1778	 60.93	+1	2050551..2051021	-	156	121635679	-	NMC2001	-	SPOUT methyltransferase superfamily protein
1779	 54.78	0	2051075..2051461	-	128	121635680	-	NMC2002	-	hypothetical protein
1780	 59.74	+1	2051520..2052125	-	201	121635681	-	NMC2003	-	hypothetical protein
1781	 55.50	0	2052122..2052721	-	199	121635682	-	NMC2004	-	hypothetical protein
1782	 61.08	+1	2052750..2054342	-	530	121635683	-	NMC2005	-	putative permease
1783	 59.81	+1	2054682..2056067	+	461	121635684	gntP	NMC2006	-	gluconate permease
1784	 58.19	0	2056087..2056605	+	172	121635685	-	NMC2007	-	putative glucokinase
1785	 54.90	0	2056944..2057861	-	305	121635686	thrB	NMC2008	-	homoserine kinase
1786	 54.93	0	2057898..2058647	-	249	121635687	ubiG	NMC2009	-	3-demethylubiquinone-9 3-methyltransferase
1787	 57.09	0	2058778..2060019	+	413	121635688	-	NMC2010	-	amino-acid transport protein
1788	 56.37	0	2060077..2061135	+	352	121635689	-	NMC2011	-	LgtG
1789	 53.96	0	2061202..2062854	-	550	121635690	-	NMC2012	-	putative integral membrane protein
1790	 35.31	-2	2063024..2063595	+	190	121635691	-	NMC2013	-	pseudogene (putative acetyltransferase)
1791	 55.85	0	2063592..2064155	+	187	121635692	-	NMC2014	-	D,D-heptose 1,7-bisphosphate phosphatase
51.80	MEAN

7.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.