IslandPathversion 1.0

IslandPath Analysis: Neisseria meningitidis FAM18



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.80 STD DEV: 7.07
Neisseria meningitidis FAM18, complete genome - 1..2194961
1917 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
115	 50.23	0	139475..140119	+	214	121634016	rplC	NMC0132	-	50S ribosomal protein L3
116	 46.70	0	140119..140739	+	206	121634017	rplD	NMC0133	-	50S ribosomal protein L4
117	 44.24	-1	140730..141050	+	106	121634018	rplW	NMC0134	-	50S ribosomal protein L23
118	 51.80	0	141056..141889	+	277	121634019	rplB	NMC0135	-	50S ribosomal protein L2
119	 45.16	0	141896..142174	+	92	121634020	rpsS	NMC0136	-	30S ribosomal protein S19
120	 42.12	-1	142183..142512	+	109	121634021	rplV	NMC0137	-	50S ribosomal protein L22
121	 45.02	0	142522..143214	+	230	121634022	rpsC	NMC0138	-	30S ribosomal protein S3
122	 46.28	0	143198..143614	+	138	121634023	rplP	NMC0139	-	50S ribosomal protein L16
123	 38.54	-1	143614..143805	+	63	121634024	rpmC	NMC0140	-	50S ribosomal protein L29
124	 36.74	-2	143805..144068	+	87	121634025	rpsQ	NMC0141	-	30S ribosomal protein S17
125	 44.17	-1	144290..144658	+	122	121634026	rplN	NMC0142	-	50S ribosomal protein L14
126	 38.58	-1	144670..144993	+	107	121634027	rplX	NMC0143	-	50S ribosomal protein L24
127	 38.52	-1	145003..145542	+	179	121634028	rplE	NMC0144	-	50S ribosomal protein L5
128	 45.75	0	145545..145850	+	101	121634029	rpsN	NMC0145	-	30S ribosomal protein S14
129	 39.44	-1	145866..146258	+	130	121634030	rpsH	NMC0146	-	30S ribosomal protein S8
130	 40.82	-1	146272..146805	+	177	121634031	rplF	NMC0147	-	50S ribosomal protein L6
131	 43.79	-1	146819..147172	+	117	121634032	rplR	NMC0148	-	50S ribosomal protein L18
132	 43.74	-1	147191..147709	+	172	121634033	rpsE	NMC0149	-	30S ribosomal protein S5
133	 41.40	-1	147702..147887	+	61	121634034	rpmD	NMC0150	-	50S ribosomal protein L30
134	 43.22	-1	147889..148323	+	144	121634035	rplO	NMC0151	-	50S ribosomal protein L15
135	 37.07	-2	148335..149645	+	436	121634036	secY	NMC0152	-	preprotein translocase subunit SecY
136	 37.90	-1	149650..149868	+	72	121634037	infA	NMC0153	-	translation initiation factor IF-1
137	 38.60	-1	149889..150002	+	37	121634038	rpmJ	NMC0154	-	50S ribosomal protein L36
138	 46.56	0	150068..150430	+	120	121634039	rpsM	NMC0155	-	30S ribosomal protein S13
139	 45.20	0	150450..150845	+	131	121634040	rpsK	NMC0156	-	30S ribosomal protein S11
140	 44.28	-1	150865..151485	+	206	121634041	rpsD	NMC0157	-	30S ribosomal protein S4
141	 42.45	-1	151511..152497	+	328	121634042	rpoA	NMC0158	-	DNA-directed RNA polymerase subunit alpha
142	 46.34	0	152521..152889	+	122	121634043	rplQ	NMC0159	-	50S ribosomal protein L17
143	 45.10	0	153036..153749	+	237	121634044	minC	NMC0160	-	septum formation inhibitor
144	 46.69	0	153777..154592	+	271	121634045	minD	NMC0161	-	septum site-determining protein
145	 44.32	-1	154596..154859	+	87	121634046	minE	NMC0162	-	cell division topological specificity factor
146	 53.09	0	154863..155783	+	306	121634047	oxyR	NMC0163	-	putative hydrogen peroxide-inducible genes activator
147	 54.90	0	156113..158950	-	945	121634048	valS	NMC0164	-	valyl-tRNA synthetase
148	 54.44	0	159047..159856	-	269	121634049	-	NMC0165	-	zinc transporter ZupT
149	 54.34	0	160037..161293	-	418	121634050	dadA	NMC0166	-	D-amino acid dehydrogenase small subunit
150	 53.74	0	161372..162763	-	463	121634051	-	NMC0167	-	putative amino-acid transporter
151	 58.94	+1	163121..163897	-	258	121634052	lpxA	NMC0168	-	UDP-N-acetylglucosamine acyltransferase
152	 35.55	-2	163940..164662	-	240	121634053	-	NMC0169	-	hypothetical protein
153	 56.89	0	164827..165276	-	149	121634054	fabZ	NMC0170	-	(3R)-hydroxymyristoyl-ACP dehydratase
154	 60.17	+1	165310..166356	-	348	121634055	lpxD	NMC0171	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
155	 53.09	0	166389..166889	-	166	121634056	-	NMC0172	-	putative outer membrane protein
156	 55.93	0	166955..169348	-	797	121634057	omp85	NMC0173	-	outer membrane protein OMP85
157	 59.13	+1	169405..170745	-	446	121634058	-	NMC0174	-	putative inner membrane protease
158	 58.25	0	170780..172015	-	411	121634059	dxr	NMC0175	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
159	 55.76	0	172020..172817	-	265	121634060	cdsA	NMC0176	-	phosphatidate cytidylyltransferase
160	 54.26	0	172821..173594	-	257	121634061	uppS	NMC0177	-	putative undecaprenyl diphosphate synthase
161	 54.30	0	173623..174180	-	185	121634062	frr	NMC0178	-	ribosome recycling factor
162	 61.26	+1	174361..175488	-	375	121634063	-	NMC0179	-	putative inner membrane protein
163	 60.33	+1	175739..176227	+	162	121634064	-	NMC0180	-	putative inner membrane protein
164	 57.05	0	176323..176946	+	207	121634065	gidB	NMC0181	-	glucose-inhibited division protein B
165	 58.91	+1	177045..177818	+	257	121634066	-	NMC0182	-	hypothetical protein
166	 57.78	0	178616..179200	-	194	121634067	rnhB	NMC0183	-	ribonuclease HII
167	 58.33	0	179268..181163	-	631	121634068	gidA	NMC0184	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
168	 55.60	0	181438..182865	-	475	121634069	-	NMC0185	-	putative inner membrane amino-acid transport protein
169	 60.40	+1	183025..184014	+	329	121634070	pdxA	NMC0186	-	pyridoxal phosphate biosynthetic protein
170	 57.97	0	185095..187854	-	919	121634071	rne	NMC0187	-	ribonuclease E
171	 57.40	0	188347..189339	+	330	121634072	rluC	NMC0190	-	ribosomal large subunit pseudouridine synthase C
172	 58.44	0	189405..190559	+	384	121634073	lpxB	NMC0191	-	lipid-A-disaccharide synthase
173	 28.72	-2	190769..191158	-	129	121634074	-	NMC0193	-	hypothetical protein
174	 36.33	-2	191492..191791	+	99	121634075	-	NMC0194	-	hypothetical protein
175	 60.62	+1	192055..192864	-	269	121634076	dapB	NMC0195	-	dihydrodipicolinate reductase
176	 57.94	0	192874..193251	-	125	121634077	-	NMC0196	-	putative outer membrane lipoprotein
177	 49.01	0	193409..193912	+	167	121634078	fur	NMC0197	-	ferric uptake regulation protein
178	 57.85	0	193982..194707	+	241	121634079	aat	NMC0198	-	leucyl/phenylalanyl-tRNA--protein transferase
179	 57.17	0	194955..195986	-	343	121634080	gapA	NMC0199	-	glyceraldehyde 3-phosphate dehydrogenase
180	 63.69	+1	196185..197024	-	279	121634081	-	NMC0200	-	putative ferredoxin
181	 55.69	0	197173..199149	+	658	121634082	-	NMC0201	-	putative inner membrane transport protein
182	 55.83	0	202007..204397	-	796	121634083	gyrB	NMC0204	-	DNA gyrase subunit B
183	 55.83	0	204553..205539	+	328	121634084	-	NMC0205	-	putative inner membrane protein
184	 57.14	0	205627..207663	+	678	121634085	prlC	NMC0206	-	oligopeptidase A
185	 58.38	0	207939..208505	-	188	121634086	-	NMC0207	-	putative integral membrane protein
186	 49.30	0	208969..209469	-	166	121634087	-	NMC0209	-	hypothetical protein
187	 47.87	0	209923..210369	-	148	121634088	pilE	NMC0210	-	class II pilin PilE
188	 57.95	0	211530..213044	-	504	121634089	katA	NMC0211	-	catalase
189	 55.63	0	213393..214244	+	283	121634090	-	NMC0212	-	RNA polymerase sigma factor
190	 60.34	+1	216671..217888	-	405	121634091	-	NMC0214	-	putative inner membrane transport protein
191	 57.26	0	218313..219269	+	318	121634092	-	NMC0215	-	putative inner membrane transport protein
192	 60.02	+1	219511..220758	-	415	121634093	fabF	NMC0216	-	3-oxoacyl-(acyl carrier protein) synthase II
193	 47.26	0	220914..221150	-	78	121634094	acpP	NMC0217	-	acyl carrier protein
194	 53.17	0	221382..222389	+	335	121634095	pyrD	NMC0218	-	dihydroorotate dehydrogenase 2
195	 35.80	-2	222723..223046	+	107	121634096	-	NMC0220	-	hypothetical protein
196	 40.78	-1	223133..223414	+	93	121634097	-	NMC0221	-	hypothetical protein
197	 40.30	-1	223467..223940	+	157	121634098	-	NMC0222	-	hypothetical protein
198	 39.88	-1	224194..224529	+	111	121634099	-	NMC0223	-	hypothetical protein
199	 57.38	0	224709..227399	+	896	121634100	glnE	NMC0224	-	glutamate-ammonia-ligase adenylyltransferase
200	 55.99	0	227699..228391	-	230	121634101	-	NMC0225	-	hypothetical protein
201	 54.77	0	228499..229692	-	397	121634102	-	NMC0226	-	putative inner membrane transport protein
202	 58.67	0	229821..230558	-	245	121634103	-	NMC0227	-	hypothetical protein
203	 56.77	0	230545..231474	-	309	121634104	-	NMC0228	-	hypothetical protein
204	 56.94	0	231471..232118	-	215	121634105	-	NMC0229	-	hypothetical protein
205	 57.11	0	232302..234509	+	735	121634106	uvrD	NMC0230	-	DNA helicase II
206	 45.74	0	234744..235283	+	179	121634107	-	NMC0231	-	hypothetical protein
207	 30.56	-2	235473..235688	-	71	121634108	-	NMC0232	-	hypothetical protein
208	 27.50	-2	235812..236171	-	119	121634109	-	NMC0233	-	hypothetical protein
209	 36.77	-2	236224..236601	+	125	121634110	-	NMC0234	-	putative IS1016 transposase
210	 45.35	0	236755..237420	+	221	121634111	-	NMC0235	-	putative inner membrane protein
211	 48.73	0	237401..238894	+	497	121634112	-	NMC0236	-	putative inner membrane protein
212	 51.26	0	239356..239712	+	118	121634113	nuoA	NMC0237	-	NADH dehydrogenase I chain A
213	 57.14	0	239703..240185	+	160	121634114	nuoB	NMC0238	-	NADH dehydrogenase subunit B
214	 51.52	0	240198..240791	+	197	121634115	nuoC	NMC0239	-	NADH dehydrogenase subunit C
51.80	MEAN

7.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.