IslandPathversion 1.0

IslandPath Analysis: Neisseria meningitidis FAM18



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.80 STD DEV: 7.07
Neisseria meningitidis FAM18, complete genome - 1..2194961
1917 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1535	 52.29	0	1766923..1768077	-	384	121635436	prpC	NMC1732	-	methylcitrate synthase
1536	 53.47	0	1768163..1769041	-	292	121635437	prpB	NMC1733	-	2-methylisocitrate lyase
1537	 53.01	0	1769664..1770974	-	436	121635438	-	NMC1735	-	putative permease
1538	 54.11	0	1771113..1772291	-	392	121635439	ftsZ	NMC1737	-	cell division protein FtsZ
1539	 53.01	0	1772410..1773654	-	414	121635440	ftsA	NMC1738	-	cell division protein
1540	 53.64	0	1773740..1774468	-	242	121635441	ftsQ	NMC1739	-	cell division protein
1541	 52.68	0	1774458..1775372	-	304	121635442	ddl	NMC1740	-	D-alanine--D-alanine ligase
1542	 56.24	0	1775485..1776894	-	469	121635443	murC	NMC1741	-	UDP-N-acetylmuramate--L-alanine ligase
1543	 60.11	+1	1777048..1778115	-	355	121635444	murG	NMC1742	-	UDP-N-acetylglucosamine-N-acetylmuramyl-pentapeptide pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
1544	 53.29	0	1778119..1779426	-	435	121635445	ftsW	NMC1743	-	cell division protein
1545	 56.13	0	1779570..1780907	-	445	121635446	murD	NMC1745	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
1546	 53.11	0	1780997..1781269	-	90	121635447	-	NMC1746	-	putative periplasmic protein
1547	 54.39	0	1781384..1782466	-	360	121635448	mraY	NMC1747	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
1548	 46.99	0	1782713..1782895	-	60	121635449	-	NMC1748	-	putative periplasmic protein
1549	 54.24	0	1782892..1784331	-	479	121635450	murF	NMC1749	-	UDP-MurNAc-pentapeptide synthetase
1550	 48.09	0	1784374..1786020	-	548	121635451	-	NMC1750	-	pseudogene (putative integral membrane protein)
1551	 56.73	0	1786043..1787521	-	492	121635452	murE	NMC1751	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
1552	 54.98	0	1787546..1789291	-	581	121635453	penA	NMC1753	-	penicillin-binding protein 2
1553	 49.63	0	1789352..1789621	-	89	121635454	-	NMC1754	-	putative small periplasmic protein
1554	 57.55	0	1789612..1790598	-	328	121635455	mraW	NMC1755	-	S-adenosyl-methyltransferase MraW
1555	 53.51	0	1790595..1791050	-	151	121635456	-	NMC1756	-	cell division protein MraZ
1556	 50.41	0	1791329..1792546	+	405	121635457	-	NMC1757	-	hypothetical protein
1557	 46.72	0	1793119..1793940	-	273	121635458	-	NMC1759	-	putative integral membrane antobiotic resistance protein
1558	 48.99	0	1793973..1794617	-	214	121635459	-	NMC1760	-	putative thiol:disulphide interchange protein
1559	 50.23	0	1794620..1795471	-	283	121635460	-	NMC1762	-	hypothetical protein
1560	 59.79	+1	1795571..1797067	-	498	121635461	-	NMC1763	-	putative chelatase
1561	 51.41	0	1797081..1797434	-	117	121635462	-	NMC1764	-	hypothetical protein
1562	 55.80	0	1797884..1799410	+	508	121635463	putP	NMC1765	-	sodium/proline symporter
1563	 58.44	0	1799442..1803264	+	1274	121635464	putA	NMC1766	-	bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase
1564	 52.23	0	1804266..1804847	-	193	121635465	-	NMC1767	-	putative putative transposase
1565	 54.60	0	1805789..1806559	-	256	121635466	xthA	NMC1768	-	exodeoxyribonuclease III
1566	 53.55	0	1806619..1806900	-	93	121635467	-	NMC1769	-	ArsR family transcriptional regulator
1567	 62.36	+1	1807368..1808249	-	293	121635468	nadC	NMC1770	-	nicotinate-nucleotide pyrophosphorylase
1568	 61.45	+1	1808324..1809262	-	312	121635469	-	NMC1771	-	putative cytoplasmic membrane protein
1569	 58.40	0	1809569..1810681	+	370	121635470	nadA	NMC1772	-	quinolinate synthetase
1570	 61.56	+1	1810887..1812395	+	502	121635471	nadB	NMC1773	-	L-aspartate oxidase
1571	 52.58	0	1813627..1814634	+	335	121635472	-	NMC1775	-	putative transposase for IS1106A3
1572	 61.11	+1	1814844..1815509	-	221	121635473	pgm2	NMC1776	-	beta-phosphoglucomutase
1573	 55.16	0	1815522..1817780	-	752	121635474	mapA	NMC1777	-	maltose phosphorylase
1574	 62.72	+1	1818014..1819051	-	345	121635475	galM	NMC1778	-	aldose 1-epimerase (mutarotase)
1575	 53.54	0	1819055..1820410	-	451	121635476	-	NMC1779	-	putative integral membrane transport protein
1576	 53.73	0	1820798..1822474	+	558	121635477	-	NMC1780	-	putative ABC transporter ATP-binding protein
1577	 52.88	0	1822534..1823019	-	161	121635478	pgpA	NMC1781	-	phosphatidylglycerophosphatase A
1578	 55.07	0	1823012..1823968	-	318	121635479	thiL	NMC1782	-	thiamine monophosphate kinase
1579	 52.54	0	1824789..1825517	-	242	121635480	rmpM	NMC1783	-	outer membrane protein class 4
1580	 52.58	0	1825881..1826831	+	316	121635481	-	NMC1784	-	transcriptional regulator CysB-like protein
1581	 52.38	0	1826944..1827678	-	244	121635482	-	NMC1785	-	putative anaerobic transcriptional regulatory protein
1582	 54.64	0	1827883..1829304	+	473	121635483	hemN	NMC1786	-	coproporphyrinogen III oxidase
1583	 53.08	0	1829657..1831231	-	524	121635484	-	NMC1787	-	putative phosphate permease
1584	 60.24	+1	1831553..1832656	+	367	121635485	anmK	NMC1788	-	anhydro-N-acetylmuramic acid kinase
1585	 59.34	+1	1832775..1833716	+	313	121635486	mafA2	NMC1789	-	adhesin MafA2
1586	 52.95	0	1833720..1835483	+	587	121635487	-	NMC1790	-	adhesin MafB2
1587	 33.02	-2	1835486..1835809	+	107	121635488	-	NMC1791	-	hypothetical protein
1588	 33.76	-2	1835862..1836095	+	77	121635489	-	NMC1792	-	hypothetical protein
1589	 36.10	-2	1836222..1836764	+	180	121635490	-	NMC1793	-	hypothetical protein
1590	 33.83	-2	1837582..1837980	+	132	121635491	-	NMC1795	-	hypothetical protein
1591	 34.92	-2	1838011..1838388	+	125	121635492	-	NMC1796	-	hypothetical protein
1592	 41.08	-1	1838520..1838984	+	154	121635493	-	NMC1797	-	hypothetical protein
1593	 33.33	-2	1838993..1839265	+	90	121635494	-	NMC1798	-	hypothetical protein
1594	 30.74	-2	1839432..1839662	+	76	121635495	-	NMC1799	-	hypothetical protein
1595	 46.03	0	1839813..1840442	+	209	121635496	-	NMC1800	-	hypothetical protein
1596	 33.95	-2	1840393..1840878	+	161	121635497	-	NMC1801	-	hypothetical protein
1597	 26.11	-2	1841099..1841458	+	119	121635498	-	NMC1802	-	putative lipoprotein
1598	 38.69	-1	1841470..1841805	+	111	121635499	-	NMC1803	-	hypothetical protein
1599	 49.33	0	1842109..1843233	+	374	121635500	-	NMC1804	-	hypothetical protein
1600	 40.58	-1	1843320..1843595	-	91	121635501	-	NMC1805	-	hypothetical protein
1601	 39.19	-1	1843612..1844379	-	255	121635502	-	NMC1806	-	hypothetical protein
1602	 53.62	0	1844804..1845079	-	91	121635503	-	NMC1807	-	hypothetical protein
1603	 54.52	0	1845076..1846359	-	427	121635504	-	NMC1808	-	putative integral membrane signal transducer protein
1604	 55.88	0	1846513..1847931	-	472	121635505	glnA	NMC1809	-	glutamine synthetase
1605	 54.69	0	1848753..1849562	+	269	121635506	aroE	NMC1810	-	shikimate dehydrogenase
1606	 55.13	0	1849564..1850265	+	233	121635507	mtgA	NMC1811	-	monofunctional biosynthetic peptidoglycan transglycosylase
1607	 51.24	0	1850734..1851498	-	254	121635508	-	NMC1812	-	putative ABC transporter ATP-binding protein
1608	 53.30	0	1851542..1852072	-	176	121635509	-	NMC1813	-	hypothetical protein
1609	 48.80	0	1852053..1852634	-	193	121635510	-	NMC1814	-	hypothetical protein
1610	 57.54	0	1852631..1853167	-	178	121635511	-	NMC1815	-	hypothetical protein
1611	 59.28	+1	1853232..1854206	-	324	121635512	-	NMC1816	-	hypothetical protein
1612	 57.67	0	1854303..1855358	+	351	121635513	tal	NMC1818	-	transaldolase
1613	 36.77	-2	1855512..1855802	+	96	121635514	-	NMC1819	-	hypothetical protein
1614	 61.94	+1	1855819..1856706	+	295	121635515	-	NMC1820	-	glutamyl-Q tRNA(Asp) synthetase
1615	 58.95	+1	1856776..1857786	-	336	121635516	-	NMC1822	-	tRNA-dihydrouridine synthase A
1616	 56.10	0	1857817..1858308	-	163	121635517	-	NMC1823	-	D-tyrosyl-tRNA deacylase
1617	 53.33	0	1858382..1859101	-	239	121635518	-	NMC1824	-	hypothetical protein
1618	 50.98	0	1859211..1860077	-	288	121635519	-	NMC1825	-	hypothetical protein
1619	 58.42	0	1860126..1860404	-	92	121635520	-	NMC1826	-	hypothetical protein
1620	 55.67	0	1860404..1860694	-	96	161723297	-	NMC1827	-	YciI-like protein
1621	 47.72	0	1860697..1861245	-	182	121635522	-	NMC1828	-	putative morphogene
1622	 55.18	0	1861433..1864060	+	875	121635523	tspA	NMC1829	-	hypothetical protein
1623	 52.76	0	1864232..1864648	-	138	121635524	gloA	NMC1830	-	lactoylglutathione lyase
1624	 53.76	0	1864695..1865864	-	389	121635525	-	NMC1831	-	hypothetical protein
1625	 48.74	0	1865875..1866231	-	118	121635526	-	NMC1832	-	hypothetical protein
1626	 57.16	0	1866499..1867497	+	332	121635527	ilvE	NMC1833	-	branched-chain amino acid aminotransferase
1627	 57.63	0	1867683..1868468	-	261	121635528	fabI	NMC1834	-	enoyl-(acyl carrier protein) reductase
1628	 56.69	0	1868623..1869444	-	273	121635529	dapD	NMC1835	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
1629	 58.80	0	1869654..1871408	-	584	121635530	pgi2	NMC1837	-	glucose-6-phosphate isomerase 2
1630	 52.72	0	1871807..1873039	+	410	121635531	pilG	NMC1838	-	pilus-assembly protein
1631	 53.66	0	1873113..1873973	+	286	121635532	pilD	NMC1839	-	type IV prepilin leader peptidase
1632	 55.92	0	1873975..1874607	+	210	121635533	-	NMC1841	-	hypothetical protein
1633	 52.38	0	1874600..1874809	+	69	121635534	-	NMC1842	-	hypothetical protein
1634	 52.83	0	1874894..1876570	-	558	121635535	pilF	NMC1844	-	type IV pilus assembly protein
51.80	MEAN

7.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.