IslandPathversion 1.0

IslandPath Analysis: Neisseria meningitidis FAM18



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.80 STD DEV: 7.07
Neisseria meningitidis FAM18, complete genome - 1..2194961
1917 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1476	 45.88	0	1699108..1699386	+	92	121635377	-	NMC1665	-	putative integral membrane protein
1477	 30.21	-2	1699544..1699831	+	95	121635378	-	NMC1667	-	hypothetical protein
1478	 44.61	-1	1699812..1700210	+	132	121635379	-	NMC1668	-	putative cell-surface protein
1479	 46.67	0	1700877..1701236	-	119	121635380	-	NMC1669	-	hypothetical protein
1480	 48.68	0	1701259..1701903	-	214	121635381	-	NMC1670	-	hypothetical protein
1481	 44.32	-1	1701905..1702441	-	178	121635382	-	NMC1671	-	hypothetical protein
1482	 47.27	0	1702453..1703550	-	365	121635383	-	NMC1672	-	hypothetical protein
1483	 49.75	0	1703553..1704965	-	470	121635384	-	NMC1673	-	hypothetical protein
1484	 42.14	-1	1705209..1706003	-	264	121635385	-	NMC1674	-	hypothetical protein
1485	 44.14	-1	1705979..1706626	-	215	121635386	-	NMC1675	-	hypothetical protein
1486	 44.44	-1	1706636..1707778	-	380	121635387	bioF	NMC1676	-	8-amino-7-oxononanoate synthase
1487	 53.20	0	1708001..1709077	+	358	121635388	-	NMC1677	-	hypothetical protein
1488	 50.65	0	1709284..1710750	-	488	121635389	-	NMC1679	-	putative integral membrane transport protein
1489	 53.14	0	1710948..1711871	-	307	121635390	speB	NMC1680	-	agmatinase
1490	 49.60	0	1711970..1713862	-	630	121635391	speA	NMC1682	-	arginine decarboxylase
1491	 50.18	0	1714029..1714313	-	94	121635392	-	NMC1683	-	hypothetical protein
1492	 53.51	0	1714464..1716272	-	602	121635393	aspS	NMC1684	-	aspartyl-tRNA synthetase
1493	 51.76	0	1716330..1717067	-	245	121635394	-	NMC1686	-	putative integral membrane protein
1494	 54.17	0	1718482..1718745	-	87	121635395	rpsT	NMC1688	-	30S ribosomal protein S20
1495	 53.46	0	1719048..1720190	+	380	121635396	-	NMC1689	-	putative polyamine permease substrate-binding protein
1496	 49.50	0	1721463..1724189	-	908	121635397	tbpA	NMC1690	-	transferrin-binding protein A
1497	 44.78	0	1724276..1726075	-	599	121635398	tbpB	NMC1691	-	transferrin-binding protein B
1498	 54.24	0	1727770..1728582	-	270	121635399	glr	NMC1692	-	glutamate racemase
1499	 58.87	+1	1728772..1729233	+	153	121635400	-	NMC1693	-	hypothetical protein
1500	 59.39	+1	1729230..1730480	+	416	121635401	amiC	NMC1694	-	N-acetylmuramoyl-L-alanine amidase
1501	 44.65	-1	1730544..1731365	+	273	121635402	-	NMC1695	-	hypothetical protein
1502	 57.31	0	1731666..1732808	-	380	121635403	-	NMC1697	-	hypothetical protein
1503	 55.32	0	1732857..1733279	-	140	121635404	-	NMC1698	-	putative secreted protein
1504	 59.63	+1	1733272..1734081	-	269	121635405	-	NMC1699	-	MutT-related protein
1505	 56.08	0	1734163..1734540	-	125	121635406	acpS	NMC1700	-	holo-(acyl-carrier protein) synthase
1506	 35.03	-2	1734740..1735507	-	255	121635407	-	NMC1701	-	hypothetical protein
1507	 33.23	-2	1735517..1736449	-	253	121635408	-	NMC1702	-	hypothetical protein
1508	 58.16	0	1736601..1737329	-	242	121635409	pdxJ	NMC1703	-	pyridoxal phosphate biosynthetic protein PdxJ
1509	 59.87	+1	1737353..1738147	-	264	121635410	recO	NMC1704	-	DNA repair protein (recombination protein o)
1510	 59.50	+1	1738178..1739308	-	376	121635411	pheA	NMC1705	-	chorismate mutase
1511	 57.32	0	1739344..1740723	-	459	121635412	-	NMC1706	-	putative integral membrane efflux protein
1512	 58.19	0	1741096..1741980	-	294	121635413	-	NMC1708	-	hypothetical protein
1513	 40.45	-1	1743688..1744896	+	402	121635414	-	NMC1709	-	hypothetical protein
1514	 41.03	-1	1744917..1745228	+	103	121635415	-	NMC1710	-	hypothetical protein
1515	 36.32	-2	1745232..1745432	+	66	121635416	-	NMC1711	-	hypothetical protein
1516	 45.89	0	1745659..1745889	+	76	121635417	-	NMC1712	-	putative integral membrane protein
1517	 43.67	-1	1745917..1746216	+	99	121635418	-	NMC1713	-	putative integral membrane protein
1518	 33.33	-2	1746233..1746655	+	140	121635419	-	NMC1714	-	hypothetical protein
1519	 47.04	0	1746543..1748162	+	539	121635420	-	NMC1715	-	TspB protein
1520	 44.91	0	1748465..1748749	+	94	121635421	-	NMC1716	-	putative integral membrane protein
1521	 44.70	-1	1748750..1749937	+	395	121635422	-	NMC1717	-	hypothetical protein
1522	 39.29	-1	1750152..1751108	+	318	121635423	-	NMC1718	-	putative transposase
1523	 50.18	0	1751514..1752332	+	272	121635424	-	NMC1719	-	Opa1800 outer membrane protein precursor
1524	 61.13	+1	1754168..1754980	-	270	121635425	-	NMC1720	-	hypothetical protein
1525	 60.37	+1	1755065..1755937	+	290	121635426	-	NMC1721	-	putative oxidoreductase
1526	 57.44	0	1755994..1757196	-	400	121635427	-	NMC1722	-	hypothetical protein
1527	 56.10	0	1757193..1757561	-	122	121635428	-	NMC1724	-	hypothetical protein
1528	 56.08	0	1757735..1758178	+	147	121635429	-	NMC1725	-	hypothetical protein
1529	 55.03	0	1758305..1759069	-	254	121635430	-	NMC1726	-	hypothetical protein
1530	 55.92	0	1759032..1760231	-	399	121635431	ackA2	NMC1727	-	acetate kinase
1531	 57.01	0	1760646..1761815	-	389	121635432	-	NMC1728	-	hypothetical protein
1532	 56.58	0	1762168..1764774	-	868	121635433	acnA	NMC1729	-	aconitate hydratase
1533	 37.68	-1	1764877..1766094	-	405	121635434	-	NMC1730	-	putative integral membrane protein
1534	 42.29	-1	1766108..1766833	-	241	121635435	ddpX	NMC1731	-	putative D-alanyl-d-alanine dipeptidase
1535	 52.29	0	1766923..1768077	-	384	121635436	prpC	NMC1732	-	methylcitrate synthase
1536	 53.47	0	1768163..1769041	-	292	121635437	prpB	NMC1733	-	2-methylisocitrate lyase
1537	 53.01	0	1769664..1770974	-	436	121635438	-	NMC1735	-	putative permease
1538	 54.11	0	1771113..1772291	-	392	121635439	ftsZ	NMC1737	-	cell division protein FtsZ
1539	 53.01	0	1772410..1773654	-	414	121635440	ftsA	NMC1738	-	cell division protein
1540	 53.64	0	1773740..1774468	-	242	121635441	ftsQ	NMC1739	-	cell division protein
1541	 52.68	0	1774458..1775372	-	304	121635442	ddl	NMC1740	-	D-alanine--D-alanine ligase
1542	 56.24	0	1775485..1776894	-	469	121635443	murC	NMC1741	-	UDP-N-acetylmuramate--L-alanine ligase
1543	 60.11	+1	1777048..1778115	-	355	121635444	murG	NMC1742	-	UDP-N-acetylglucosamine-N-acetylmuramyl-pentapeptide pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
1544	 53.29	0	1778119..1779426	-	435	121635445	ftsW	NMC1743	-	cell division protein
1545	 56.13	0	1779570..1780907	-	445	121635446	murD	NMC1745	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
1546	 53.11	0	1780997..1781269	-	90	121635447	-	NMC1746	-	putative periplasmic protein
1547	 54.39	0	1781384..1782466	-	360	121635448	mraY	NMC1747	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
1548	 46.99	0	1782713..1782895	-	60	121635449	-	NMC1748	-	putative periplasmic protein
1549	 54.24	0	1782892..1784331	-	479	121635450	murF	NMC1749	-	UDP-MurNAc-pentapeptide synthetase
1550	 48.09	0	1784374..1786020	-	548	121635451	-	NMC1750	-	pseudogene (putative integral membrane protein)
1551	 56.73	0	1786043..1787521	-	492	121635452	murE	NMC1751	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
1552	 54.98	0	1787546..1789291	-	581	121635453	penA	NMC1753	-	penicillin-binding protein 2
1553	 49.63	0	1789352..1789621	-	89	121635454	-	NMC1754	-	putative small periplasmic protein
1554	 57.55	0	1789612..1790598	-	328	121635455	mraW	NMC1755	-	S-adenosyl-methyltransferase MraW
1555	 53.51	0	1790595..1791050	-	151	121635456	-	NMC1756	-	cell division protein MraZ
1556	 50.41	0	1791329..1792546	+	405	121635457	-	NMC1757	-	hypothetical protein
1557	 46.72	0	1793119..1793940	-	273	121635458	-	NMC1759	-	putative integral membrane antobiotic resistance protein
1558	 48.99	0	1793973..1794617	-	214	121635459	-	NMC1760	-	putative thiol:disulphide interchange protein
1559	 50.23	0	1794620..1795471	-	283	121635460	-	NMC1762	-	hypothetical protein
1560	 59.79	+1	1795571..1797067	-	498	121635461	-	NMC1763	-	putative chelatase
1561	 51.41	0	1797081..1797434	-	117	121635462	-	NMC1764	-	hypothetical protein
1562	 55.80	0	1797884..1799410	+	508	121635463	putP	NMC1765	-	sodium/proline symporter
1563	 58.44	0	1799442..1803264	+	1274	121635464	putA	NMC1766	-	bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase
1564	 52.23	0	1804266..1804847	-	193	121635465	-	NMC1767	-	putative putative transposase
1565	 54.60	0	1805789..1806559	-	256	121635466	xthA	NMC1768	-	exodeoxyribonuclease III
1566	 53.55	0	1806619..1806900	-	93	121635467	-	NMC1769	-	ArsR family transcriptional regulator
1567	 62.36	+1	1807368..1808249	-	293	121635468	nadC	NMC1770	-	nicotinate-nucleotide pyrophosphorylase
1568	 61.45	+1	1808324..1809262	-	312	121635469	-	NMC1771	-	putative cytoplasmic membrane protein
1569	 58.40	0	1809569..1810681	+	370	121635470	nadA	NMC1772	-	quinolinate synthetase
1570	 61.56	+1	1810887..1812395	+	502	121635471	nadB	NMC1773	-	L-aspartate oxidase
1571	 52.58	0	1813627..1814634	+	335	121635472	-	NMC1775	-	putative transposase for IS1106A3
1572	 61.11	+1	1814844..1815509	-	221	121635473	pgm2	NMC1776	-	beta-phosphoglucomutase
1573	 55.16	0	1815522..1817780	-	752	121635474	mapA	NMC1777	-	maltose phosphorylase
1574	 62.72	+1	1818014..1819051	-	345	121635475	galM	NMC1778	-	aldose 1-epimerase (mutarotase)
1575	 53.54	0	1819055..1820410	-	451	121635476	-	NMC1779	-	putative integral membrane transport protein
51.80	MEAN

7.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.