IslandPath Analysis: Neisseria meningitidis FAM18



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.80   STD DEV: 7.07
Neisseria meningitidis FAM18, complete genome - 1..2194961
1917 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1417	 55.48	0	1627646..1628485	-	279	121635318	-	NMC1595	-	putative cytochrome
1418	 55.95	0	1628910..1630103	-	397	121635319	tyrB	NMC1596	-	aromatic amino acid aminotransferase
1419	 48.73	0	1630109..1631212	-	367	121635320	trmA	NMC1597	-	tRNA (uracil-5-)-methyltransferase
1420	 59.13	+1	1631355..1632455	+	366	121635321	aroC	NMC1598	-	chorismate synthase
1421	 54.69	0	1632546..1632971	+	141	121635322	-	NMC1599	-	hypothetical protein
1422	 58.16	0	1633045..1635030	-	661	121635323	parE	NMC1600	-	DNA topoisomerase IV subunit B
1423	 57.52	0	1635097..1635621	-	174	121635324	-	NMC1601	-	dinucleoside polyphosphate hydrolase
1424	 54.09	0	1635786..1637081	+	431	121635325	serS	NMC1602	-	seryl-tRNA synthetase
1425	 53.39	0	1637159..1638160	-	333	121635326	ldhA	NMC1603	-	D-lactate dehydrogenase
1426	 57.94	0	1638282..1639358	-	358	121635327	prfA	NMC1604	-	peptide chain release factor 1
1427	 58.06	0	1639448..1640272	-	274	121635328	-	NMC1605	-	hypothetical protein
1428	 59.42	+1	1640221..1641213	-	330	121635329	ans	NMC1606	-	L-asparaginase
1429	 54.39	0	1641280..1641963	-	227	121635330	-	NMC1607	-	DedA family integral membrane protein
1430	 57.08	0	1642152..1643486	-	444	121635331	-	NMC1608	-	putative phosphoglucomutase/phosphomannomutase
1431	 58.33	0	1643616..1644467	-	283	121635332	dhpS	NMC1609	-	dihydropteroate synthase
1432	 54.61	0	1644634..1646856	+	740	121635333	-	NMC1610	-	hypothetical protein
1433	 55.82	0	1646921..1648405	-	494	121635334	-	NMC1611	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
1434	 50.78	0	1648419..1648934	-	171	121635335	-	NMC1613	-	hypothetical protein
1435	 54.48	0	1648941..1649375	-	144	121635336	-	NMC1614	-	putative integral membrane protein
1436	 58.62	0	1649673..1650107	-	144	121635337	-	NMC1615	-	hypothetical protein
1437	 48.69	0	1650282..1650893	+	203	121635338	-	NMC1616	-	insertion element IS1016 transposase
1438	 59.63	+1	1650838..1651974	+	377	121635339	fabF2	NMC1617	-	3-oxoacyl-(acyl carrier protein) synthase II
1439	 44.71	-1	1652172..1652936	+	254	121635340	lgtF	NMC1618	-	beta-1,4-glucosyltransferase
1440	 47.51	0	1652937..1654001	+	354	121635341	rfaK	NMC1619	-	alpha 1,2 N-acetylglucosamine transferase
1441	 42.69	-1	1654040..1654210	+	56	121635342	-	NMC1621	-	hypothetical protein
1442	 52.24	0	1654388..1655725	+	445	121635343	-	NMC1622	-	putative integral membrane ion transporter
1443	 54.61	0	1655897..1656557	-	220	121635344	-	NMC1623	-	putative periplasmic protein
1444	 52.83	0	1656566..1657360	-	264	121635345	thyA	NMC1624	-	thymidylate synthase
1445	 55.96	0	1657744..1659078	+	444	121635346	gdhA	NMC1625	-	glutamate dehydrogenase
1446	 31.71	-2	1659226..1659594	+	122	121635347	-	NMC1626	-	hypothetical protein
1447	 54.02	0	1660081..1660863	-	260	121635348	-	NMC1629	-	GntR family transcriptional regulator
1448	 53.33	0	1661395..1661694	+	99	121635349	-	NMC1630	-	putative integral membrane protein
1449	 55.58	0	1662062..1663513	-	483	121635350	mtrE	NMC1632	-	putative outer membrane lipoprotein
1450	 54.28	0	1663520..1666723	-	1067	121635351	mtrD	NMC1633	-	drug efflux protein
1451	 58.27	0	1666735..1667973	-	412	121635352	mtrC	NMC1634	-	membrane fusion protein
1452	 51.82	0	1668381..1669013	+	210	121635353	mtrR	NMC1635	-	transcriptional regulato
1453	 29.07	-2	1669292..1669549	-	85	121635354	-	NMC1636	-	hypothetical protein
1454	 48.25	0	1669838..1671406	+	522	121635355	-	NMC1637	-	hypothetical protein
1455	 55.61	0	1671476..1674685	-	1069	121635356	recC	NMC1638	-	exodeoxyribonuclease V
1456	 54.11	0	1674786..1676195	-	469	121635357	-	NMC1639	-	putative integral membrane protein
1457	 51.31	0	1677927..1678538	-	203	121635358	-	NMC1643	-	putative cytochrome oxidase subunit
1458	 51.31	0	1678565..1680010	-	481	121635359	-	NMC1645	-	cytochrome c oxidase subunit
1459	 51.54	0	1680316..1682073	+	585	121635360	-	NMC1646	-	hypothetical protein
1460	 55.13	0	1682099..1682566	+	155	121635361	-	NMC1647	-	hypothetical protein
1461	 51.72	0	1683253..1683687	-	144	121635362	exbD	NMC1648	-	biopolymer transport protein
1462	 55.35	0	1683690..1684352	-	220	121635363	exbB	NMC1649	-	biopolymer transport protein
1463	 55.56	0	1684418..1685254	-	278	121635364	tonB	NMC1650	-	TonB protein
1464	 56.34	0	1685509..1686147	+	212	121635365	-	NMC1651	-	hypothetical protein
1465	 37.33	-2	1686599..1687399	-	266	121635366	-	NMC1652	-	putative integral membrane protein
1466	 29.12	-2	1687535..1688056	-	173	121635367	-	NMC1653	-	hypothetical protein
1467	 51.32	0	1688378..1689022	-	214	121635368	grxB	NMC1654	-	glutaredoxin 2
1468	 57.45	0	1689347..1691560	+	737	121635369	relA	NMC1655	-	GTP pyrophosphokinase
1469	 52.28	0	1692854..1694257	-	467	121635370	natC	NMC1657	-	putative periplasmic type I secretion system protein
1470	 55.67	0	1694326..1695753	-	475	121635371	-	NMC1658	-	putative periplasmic type I secretion system protein
1471	 45.17	0	1696339..1696845	+	168	121635372	-	NMC1660	-	hypothetical protein
1472	 46.57	0	1697238..1698272	+	344	121635373	-	NMC1661	-	hypothetical protein
1473	 47.25	0	1698263..1698607	+	114	121635374	-	NMC1662	-	hypothetical protein
1474	 42.42	-1	1698612..1698809	+	65	121635375	-	NMC1663	-	hypothetical protein
1475	 47.37	0	1698817..1699101	+	94	121635376	-	NMC1664	-	putative integral membrane protein
1476	 45.88	0	1699108..1699386	+	92	121635377	-	NMC1665	-	putative integral membrane protein
1477	 30.21	-2	1699544..1699831	+	95	121635378	-	NMC1667	-	hypothetical protein
1478	 44.61	-1	1699812..1700210	+	132	121635379	-	NMC1668	-	putative cell-surface protein
1479	 46.67	0	1700877..1701236	-	119	121635380	-	NMC1669	-	hypothetical protein
1480	 48.68	0	1701259..1701903	-	214	121635381	-	NMC1670	-	hypothetical protein
1481	 44.32	-1	1701905..1702441	-	178	121635382	-	NMC1671	-	hypothetical protein
1482	 47.27	0	1702453..1703550	-	365	121635383	-	NMC1672	-	hypothetical protein
1483	 49.75	0	1703553..1704965	-	470	121635384	-	NMC1673	-	hypothetical protein
1484	 42.14	-1	1705209..1706003	-	264	121635385	-	NMC1674	-	hypothetical protein
1485	 44.14	-1	1705979..1706626	-	215	121635386	-	NMC1675	-	hypothetical protein
1486	 44.44	-1	1706636..1707778	-	380	121635387	bioF	NMC1676	-	8-amino-7-oxononanoate synthase
1487	 53.20	0	1708001..1709077	+	358	121635388	-	NMC1677	-	hypothetical protein
1488	 50.65	0	1709284..1710750	-	488	121635389	-	NMC1679	-	putative integral membrane transport protein
1489	 53.14	0	1710948..1711871	-	307	121635390	speB	NMC1680	-	agmatinase
1490	 49.60	0	1711970..1713862	-	630	121635391	speA	NMC1682	-	arginine decarboxylase
1491	 50.18	0	1714029..1714313	-	94	121635392	-	NMC1683	-	hypothetical protein
1492	 53.51	0	1714464..1716272	-	602	121635393	aspS	NMC1684	-	aspartyl-tRNA synthetase
1493	 51.76	0	1716330..1717067	-	245	121635394	-	NMC1686	-	putative integral membrane protein
1494	 54.17	0	1718482..1718745	-	87	121635395	rpsT	NMC1688	-	30S ribosomal protein S20
1495	 53.46	0	1719048..1720190	+	380	121635396	-	NMC1689	-	putative polyamine permease substrate-binding protein
1496	 49.50	0	1721463..1724189	-	908	121635397	tbpA	NMC1690	-	transferrin-binding protein A
1497	 44.78	0	1724276..1726075	-	599	121635398	tbpB	NMC1691	-	transferrin-binding protein B
1498	 54.24	0	1727770..1728582	-	270	121635399	glr	NMC1692	-	glutamate racemase
1499	 58.87	+1	1728772..1729233	+	153	121635400	-	NMC1693	-	hypothetical protein
1500	 59.39	+1	1729230..1730480	+	416	121635401	amiC	NMC1694	-	N-acetylmuramoyl-L-alanine amidase
1501	 44.65	-1	1730544..1731365	+	273	121635402	-	NMC1695	-	hypothetical protein
1502	 57.31	0	1731666..1732808	-	380	121635403	-	NMC1697	-	hypothetical protein
1503	 55.32	0	1732857..1733279	-	140	121635404	-	NMC1698	-	putative secreted protein
1504	 59.63	+1	1733272..1734081	-	269	121635405	-	NMC1699	-	MutT-related protein
1505	 56.08	0	1734163..1734540	-	125	121635406	acpS	NMC1700	-	holo-(acyl-carrier protein) synthase
1506	 35.03	-2	1734740..1735507	-	255	121635407	-	NMC1701	-	hypothetical protein
1507	 33.23	-2	1735517..1736449	-	253	121635408	-	NMC1702	-	hypothetical protein
1508	 58.16	0	1736601..1737329	-	242	121635409	pdxJ	NMC1703	-	pyridoxal phosphate biosynthetic protein PdxJ
1509	 59.87	+1	1737353..1738147	-	264	121635410	recO	NMC1704	-	DNA repair protein (recombination protein o)
1510	 59.50	+1	1738178..1739308	-	376	121635411	pheA	NMC1705	-	chorismate mutase
1511	 57.32	0	1739344..1740723	-	459	121635412	-	NMC1706	-	putative integral membrane efflux protein
1512	 58.19	0	1741096..1741980	-	294	121635413	-	NMC1708	-	hypothetical protein
1513	 40.45	-1	1743688..1744896	+	402	121635414	-	NMC1709	-	hypothetical protein
1514	 41.03	-1	1744917..1745228	+	103	121635415	-	NMC1710	-	hypothetical protein
1515	 36.32	-2	1745232..1745432	+	66	121635416	-	NMC1711	-	hypothetical protein
1516	 45.89	0	1745659..1745889	+	76	121635417	-	NMC1712	-	putative integral membrane protein
51.80	MEAN

7.07	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.