IslandPath Analysis: Neisseria meningitidis FAM18



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.80   STD DEV: 7.07
Neisseria meningitidis FAM18, complete genome - 1..2194961
1917 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1390	 52.88	0	1593070..1594128	+	352	121635291	alr	NMC1567	-	alanine racemase
1391	 55.24	0	1594192..1595547	-	451	121635292	-	NMC1568	-	hypothetical protein
1392	 43.59	-1	1595563..1595835	-	90	121635293	-	NMC1569	-	hypothetical protein
1393	 45.66	0	1595961..1596698	-	245	121635294	-	NMC1570	-	putative periplasmic protein
1394	 46.16	0	1596979..1597890	-	303	121635295	-	NMC1571	-	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
1395	 46.80	0	1598023..1598616	+	197	121635296	-	NMC1572	-	hypothetical protein
1396	 53.62	0	1598728..1599348	+	206	121635297	-	NMC1573	-	hypothetical protein
1397	 55.05	0	1599279..1599743	-	154	121635298	-	NMC1574	-	putative DNA transport competence protein
1398	 49.11	0	1605612..1606796	+	394	121635299	-	NMC1576	-	hypothetical protein
1399	 50.86	0	1606863..1609019	-	718	121635300	spoT	NMC1577	-	guanosine-3',5'-bis(diphosphate) 3'-pyrophophohydrolase
1400	 52.17	0	1609112..1609318	-	68	121635301	rpoZ	NMC1578	-	DNA-directed RNA polymerase omega chain
1401	 53.40	0	1609377..1609994	-	205	121635302	gmk	NMC1579	-	guanylate kinase
1402	 53.00	0	1610122..1610721	+	199	121635303	apt	NMC1580	-	adenine phosphoribosyltransferase
1403	 54.50	0	1610767..1611555	-	262	121635304	-	NMC1581	-	hypothetical protein
1404	 53.24	0	1611880..1613235	+	451	121635305	-	NMC1582	-	protease
1405	 59.96	+1	1613369..1613845	+	158	121635306	-	NMC1583	-	hypothetical protein
1406	 42.38	-1	1614450..1614836	-	128	121635307	-	NMC1584	-	hypothetical protein
1407	 40.24	-1	1614833..1615078	-	81	121635308	-	NMC1585	-	hypothetical protein
1408	 52.23	0	1615450..1617829	-	793	121635309	hmbR	NMC1586	-	pseudogene (haemoglobin receptor)
1409	 52.96	0	1618004..1618696	-	230	121635310	hemO	NMC1587	-	haem utilisation protein
1410	 55.94	0	1619127..1620431	+	434	121635311	-	NMC1588	-	hypothetical protein
1411	 52.22	0	1620424..1622064	+	546	121635312	-	NMC1589	-	hypothetical protein
1412	 58.19	0	1622064..1622582	+	172	121635313	-	NMC1590	-	putative lipoprotein
1413	 51.63	0	1622586..1623137	+	183	121635314	tag	NMC1591	-	DNA-3-methyladenine glycosylase I
1414	 55.77	0	1623145..1623768	+	207	121635315	-	NMC1592	-	putative lipase
1415	 53.40	0	1623990..1624298	+	102	121635316	-	NMC1593	-	putative integral membrane protein
1416	 56.05	0	1624329..1627181	+	950	121635317	gcvP	NMC1594	-	glycine dehydrogenase
1417	 55.48	0	1627646..1628485	-	279	121635318	-	NMC1595	-	putative cytochrome
1418	 55.95	0	1628910..1630103	-	397	121635319	tyrB	NMC1596	-	aromatic amino acid aminotransferase
1419	 48.73	0	1630109..1631212	-	367	121635320	trmA	NMC1597	-	tRNA (uracil-5-)-methyltransferase
1420	 59.13	+1	1631355..1632455	+	366	121635321	aroC	NMC1598	-	chorismate synthase
1421	 54.69	0	1632546..1632971	+	141	121635322	-	NMC1599	-	hypothetical protein
1422	 58.16	0	1633045..1635030	-	661	121635323	parE	NMC1600	-	DNA topoisomerase IV subunit B
1423	 57.52	0	1635097..1635621	-	174	121635324	-	NMC1601	-	dinucleoside polyphosphate hydrolase
1424	 54.09	0	1635786..1637081	+	431	121635325	serS	NMC1602	-	seryl-tRNA synthetase
1425	 53.39	0	1637159..1638160	-	333	121635326	ldhA	NMC1603	-	D-lactate dehydrogenase
1426	 57.94	0	1638282..1639358	-	358	121635327	prfA	NMC1604	-	peptide chain release factor 1
1427	 58.06	0	1639448..1640272	-	274	121635328	-	NMC1605	-	hypothetical protein
1428	 59.42	+1	1640221..1641213	-	330	121635329	ans	NMC1606	-	L-asparaginase
1429	 54.39	0	1641280..1641963	-	227	121635330	-	NMC1607	-	DedA family integral membrane protein
1430	 57.08	0	1642152..1643486	-	444	121635331	-	NMC1608	-	putative phosphoglucomutase/phosphomannomutase
1431	 58.33	0	1643616..1644467	-	283	121635332	dhpS	NMC1609	-	dihydropteroate synthase
1432	 54.61	0	1644634..1646856	+	740	121635333	-	NMC1610	-	hypothetical protein
1433	 55.82	0	1646921..1648405	-	494	121635334	-	NMC1611	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
1434	 50.78	0	1648419..1648934	-	171	121635335	-	NMC1613	-	hypothetical protein
1435	 54.48	0	1648941..1649375	-	144	121635336	-	NMC1614	-	putative integral membrane protein
1436	 58.62	0	1649673..1650107	-	144	121635337	-	NMC1615	-	hypothetical protein
1437	 48.69	0	1650282..1650893	+	203	121635338	-	NMC1616	-	insertion element IS1016 transposase
1438	 59.63	+1	1650838..1651974	+	377	121635339	fabF2	NMC1617	-	3-oxoacyl-(acyl carrier protein) synthase II
1439	 44.71	-1	1652172..1652936	+	254	121635340	lgtF	NMC1618	-	beta-1,4-glucosyltransferase
1440	 47.51	0	1652937..1654001	+	354	121635341	rfaK	NMC1619	-	alpha 1,2 N-acetylglucosamine transferase
1441	 42.69	-1	1654040..1654210	+	56	121635342	-	NMC1621	-	hypothetical protein
1442	 52.24	0	1654388..1655725	+	445	121635343	-	NMC1622	-	putative integral membrane ion transporter
1443	 54.61	0	1655897..1656557	-	220	121635344	-	NMC1623	-	putative periplasmic protein
1444	 52.83	0	1656566..1657360	-	264	121635345	thyA	NMC1624	-	thymidylate synthase
1445	 55.96	0	1657744..1659078	+	444	121635346	gdhA	NMC1625	-	glutamate dehydrogenase
1446	 31.71	-2	1659226..1659594	+	122	121635347	-	NMC1626	-	hypothetical protein
1447	 54.02	0	1660081..1660863	-	260	121635348	-	NMC1629	-	GntR family transcriptional regulator
1448	 53.33	0	1661395..1661694	+	99	121635349	-	NMC1630	-	putative integral membrane protein
1449	 55.58	0	1662062..1663513	-	483	121635350	mtrE	NMC1632	-	putative outer membrane lipoprotein
1450	 54.28	0	1663520..1666723	-	1067	121635351	mtrD	NMC1633	-	drug efflux protein
1451	 58.27	0	1666735..1667973	-	412	121635352	mtrC	NMC1634	-	membrane fusion protein
1452	 51.82	0	1668381..1669013	+	210	121635353	mtrR	NMC1635	-	transcriptional regulato
1453	 29.07	-2	1669292..1669549	-	85	121635354	-	NMC1636	-	hypothetical protein
1454	 48.25	0	1669838..1671406	+	522	121635355	-	NMC1637	-	hypothetical protein
1455	 55.61	0	1671476..1674685	-	1069	121635356	recC	NMC1638	-	exodeoxyribonuclease V
1456	 54.11	0	1674786..1676195	-	469	121635357	-	NMC1639	-	putative integral membrane protein
1457	 51.31	0	1677927..1678538	-	203	121635358	-	NMC1643	-	putative cytochrome oxidase subunit
1458	 51.31	0	1678565..1680010	-	481	121635359	-	NMC1645	-	cytochrome c oxidase subunit
1459	 51.54	0	1680316..1682073	+	585	121635360	-	NMC1646	-	hypothetical protein
1460	 55.13	0	1682099..1682566	+	155	121635361	-	NMC1647	-	hypothetical protein
1461	 51.72	0	1683253..1683687	-	144	121635362	exbD	NMC1648	-	biopolymer transport protein
1462	 55.35	0	1683690..1684352	-	220	121635363	exbB	NMC1649	-	biopolymer transport protein
1463	 55.56	0	1684418..1685254	-	278	121635364	tonB	NMC1650	-	TonB protein
1464	 56.34	0	1685509..1686147	+	212	121635365	-	NMC1651	-	hypothetical protein
1465	 37.33	-2	1686599..1687399	-	266	121635366	-	NMC1652	-	putative integral membrane protein
1466	 29.12	-2	1687535..1688056	-	173	121635367	-	NMC1653	-	hypothetical protein
1467	 51.32	0	1688378..1689022	-	214	121635368	grxB	NMC1654	-	glutaredoxin 2
1468	 57.45	0	1689347..1691560	+	737	121635369	relA	NMC1655	-	GTP pyrophosphokinase
1469	 52.28	0	1692854..1694257	-	467	121635370	natC	NMC1657	-	putative periplasmic type I secretion system protein
1470	 55.67	0	1694326..1695753	-	475	121635371	-	NMC1658	-	putative periplasmic type I secretion system protein
1471	 45.17	0	1696339..1696845	+	168	121635372	-	NMC1660	-	hypothetical protein
1472	 46.57	0	1697238..1698272	+	344	121635373	-	NMC1661	-	hypothetical protein
1473	 47.25	0	1698263..1698607	+	114	121635374	-	NMC1662	-	hypothetical protein
1474	 42.42	-1	1698612..1698809	+	65	121635375	-	NMC1663	-	hypothetical protein
1475	 47.37	0	1698817..1699101	+	94	121635376	-	NMC1664	-	putative integral membrane protein
1476	 45.88	0	1699108..1699386	+	92	121635377	-	NMC1665	-	putative integral membrane protein
1477	 30.21	-2	1699544..1699831	+	95	121635378	-	NMC1667	-	hypothetical protein
1478	 44.61	-1	1699812..1700210	+	132	121635379	-	NMC1668	-	putative cell-surface protein
1479	 46.67	0	1700877..1701236	-	119	121635380	-	NMC1669	-	hypothetical protein
1480	 48.68	0	1701259..1701903	-	214	121635381	-	NMC1670	-	hypothetical protein
1481	 44.32	-1	1701905..1702441	-	178	121635382	-	NMC1671	-	hypothetical protein
1482	 47.27	0	1702453..1703550	-	365	121635383	-	NMC1672	-	hypothetical protein
1483	 49.75	0	1703553..1704965	-	470	121635384	-	NMC1673	-	hypothetical protein
1484	 42.14	-1	1705209..1706003	-	264	121635385	-	NMC1674	-	hypothetical protein
1485	 44.14	-1	1705979..1706626	-	215	121635386	-	NMC1675	-	hypothetical protein
1486	 44.44	-1	1706636..1707778	-	380	121635387	bioF	NMC1676	-	8-amino-7-oxononanoate synthase
1487	 53.20	0	1708001..1709077	+	358	121635388	-	NMC1677	-	hypothetical protein
1488	 50.65	0	1709284..1710750	-	488	121635389	-	NMC1679	-	putative integral membrane transport protein
1489	 53.14	0	1710948..1711871	-	307	121635390	speB	NMC1680	-	agmatinase
51.80	MEAN

7.07	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.