IslandPathversion 1.0

IslandPath Analysis: Neisseria meningitidis FAM18



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.80 STD DEV: 7.07
Neisseria meningitidis FAM18, complete genome - 1..2194961
1917 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1350	 56.04	0	1533197..1534099	+	300	121635251	-	NMC1515	-	hypothetical protein
1351	 51.19	0	1534140..1535270	-	376	121635252	-	NMC1516	-	putative polyamine permease substrate-binding protein
1352	 55.16	0	1535475..1538099	+	874	121635253	alaS	NMC1518	-	alanyl-tRNA synthetase
1353	 44.57	-1	1538188..1539210	-	340	121635254	-	NMC1519	-	hypothetical protein
1354	 42.80	-1	1539264..1540415	-	383	121635255	-	NMC1520	-	C-5 cytosine-specific DNA methylase
1355	 59.47	+1	1543413..1544357	+	314	121635256	-	NMC1523	-	potassium-tellurite ethidium and proflavin transporter
1356	 55.12	0	1544431..1545114	-	227	121635257	gpm	NMC1524	-	phosphoglycerate mutase
1357	 56.09	0	1545417..1547714	+	765	121635258	parC	NMC1525	-	DNA topoisomerase IV subunit A
1358	 57.18	0	1547734..1549251	+	505	121635259	-	NMC1526	-	putative two component sensor kinase
1359	 57.05	0	1549303..1549770	+	155	121635260	-	NMC1527	-	putative two component response regulator
1360	 60.56	+1	1549874..1550626	+	250	121635261	-	NMC1528	-	hypothetical protein
1361	 57.44	0	1552367..1553536	-	389	121635262	metZ	NMC1530	-	O-succinylhomoserine sulfhydrolase
1362	 54.59	0	1553834..1554595	-	253	121635263	-	NMC1531	-	hypothetical protein
1363	 53.97	0	1554695..1554946	+	83	121635264	-	NMC1532	-	hypothetical protein
1364	 51.55	0	1554998..1555804	+	268	121635265	hisJ	NMC1533	-	histidine-binding periplasmic protein
1365	 55.76	0	1555994..1557634	+	546	121635266	fumA	NMC1534	-	fumarate hydratase
1366	 58.53	0	1557732..1559144	+	470	121635267	trkA	NMC1535	-	potassium transporter peripheral membrane component
1367	 50.79	0	1559477..1560364	-	295	121635268	-	NMC1536	-	putative insertion element is1655 transposase (fragment)
1368	 57.13	0	1561494..1562300	-	268	121635269	thiD	NMC1538	-	phosphomethylpyrimidine kinase
1369	 57.31	0	1564531..1564968	+	145	121635270	rnhA	NMC1544	-	ribonuclease HI
1370	 54.32	0	1566542..1566946	+	134	121635271	-	NMC1545	-	hypothetical protein
1371	 57.30	0	1566986..1568170	+	394	121635272	-	NMC1546	-	hypothetical protein
1372	 48.50	0	1568233..1568766	-	177	121635273	gpxA	NMC1547	-	glutathione peroxidase
1373	 53.15	0	1568945..1571200	-	750	121635274	nor	NMC1548	-	nitric oxide reductase
1374	 55.60	0	1571574..1572733	+	386	121635275	aniA	NMC1549	-	nitrite reductase, major outer membrane copper-containing protein
1375	 54.37	0	1572858..1573613	+	251	121635276	-	NMC1550	-	hypothetical protein
1376	 50.00	0	1574776..1575569	+	264	121635277	opaB	NMC1551	-	pseudogene (opacity protein)
1377	 53.41	0	1575770..1576327	-	185	121635278	-	NMC1552	-	hypothetical protein
1378	 52.17	0	1576403..1578037	-	544	121635279	-	NMC1553	-	hypothetical protein
1379	 53.75	0	1578318..1579424	-	368	121635280	serC	NMC1554	-	phosphoserine aminotransferase
1380	 51.39	0	1579789..1580220	+	143	121635281	-	NMC1555	-	hypothetical protein
1381	 56.19	0	1580233..1581750	+	505	121635282	nusA	NMC1556	-	transcription elongation factor NusA
1382	 56.73	0	1581762..1584650	+	962	121635283	infB	NMC1557	-	translation initiation factor IF-2
1383	 59.50	+1	1584862..1586256	-	464	121635284	-	NMC1558	-	putative integral membrane protein
1384	 58.02	0	1586330..1587670	-	446	121635285	-	NMC1559	-	putative integral membrane protein
1385	 51.20	0	1587813..1588439	+	208	121635286	-	NMC1560	-	putative haemolysin
1386	 51.59	0	1588503..1589921	-	472	121635287	-	NMC1562	-	putative sodium:alanine symporter
1387	 55.83	0	1590248..1590976	+	242	121635288	-	NMC1563	-	hypothetical protein
1388	 52.46	0	1591035..1591724	-	229	121635289	-	NMC1564	-	putative disulphide bond formation protein
1389	 46.88	0	1592281..1592745	-	154	121635290	-	NMC1566	-	transcription regulator AsnC
1390	 52.88	0	1593070..1594128	+	352	121635291	alr	NMC1567	-	alanine racemase
1391	 55.24	0	1594192..1595547	-	451	121635292	-	NMC1568	-	hypothetical protein
1392	 43.59	-1	1595563..1595835	-	90	121635293	-	NMC1569	-	hypothetical protein
1393	 45.66	0	1595961..1596698	-	245	121635294	-	NMC1570	-	putative periplasmic protein
1394	 46.16	0	1596979..1597890	-	303	121635295	-	NMC1571	-	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
1395	 46.80	0	1598023..1598616	+	197	121635296	-	NMC1572	-	hypothetical protein
1396	 53.62	0	1598728..1599348	+	206	121635297	-	NMC1573	-	hypothetical protein
1397	 55.05	0	1599279..1599743	-	154	121635298	-	NMC1574	-	putative DNA transport competence protein
1398	 49.11	0	1605612..1606796	+	394	121635299	-	NMC1576	-	hypothetical protein
1399	 50.86	0	1606863..1609019	-	718	121635300	spoT	NMC1577	-	guanosine-3',5'-bis(diphosphate) 3'-pyrophophohydrolase
1400	 52.17	0	1609112..1609318	-	68	121635301	rpoZ	NMC1578	-	DNA-directed RNA polymerase omega chain
1401	 53.40	0	1609377..1609994	-	205	121635302	gmk	NMC1579	-	guanylate kinase
1402	 53.00	0	1610122..1610721	+	199	121635303	apt	NMC1580	-	adenine phosphoribosyltransferase
1403	 54.50	0	1610767..1611555	-	262	121635304	-	NMC1581	-	hypothetical protein
1404	 53.24	0	1611880..1613235	+	451	121635305	-	NMC1582	-	protease
1405	 59.96	+1	1613369..1613845	+	158	121635306	-	NMC1583	-	hypothetical protein
1406	 42.38	-1	1614450..1614836	-	128	121635307	-	NMC1584	-	hypothetical protein
1407	 40.24	-1	1614833..1615078	-	81	121635308	-	NMC1585	-	hypothetical protein
1408	 52.23	0	1615450..1617829	-	793	121635309	hmbR	NMC1586	-	pseudogene (haemoglobin receptor)
1409	 52.96	0	1618004..1618696	-	230	121635310	hemO	NMC1587	-	haem utilisation protein
1410	 55.94	0	1619127..1620431	+	434	121635311	-	NMC1588	-	hypothetical protein
1411	 52.22	0	1620424..1622064	+	546	121635312	-	NMC1589	-	hypothetical protein
1412	 58.19	0	1622064..1622582	+	172	121635313	-	NMC1590	-	putative lipoprotein
1413	 51.63	0	1622586..1623137	+	183	121635314	tag	NMC1591	-	DNA-3-methyladenine glycosylase I
1414	 55.77	0	1623145..1623768	+	207	121635315	-	NMC1592	-	putative lipase
1415	 53.40	0	1623990..1624298	+	102	121635316	-	NMC1593	-	putative integral membrane protein
1416	 56.05	0	1624329..1627181	+	950	121635317	gcvP	NMC1594	-	glycine dehydrogenase
1417	 55.48	0	1627646..1628485	-	279	121635318	-	NMC1595	-	putative cytochrome
1418	 55.95	0	1628910..1630103	-	397	121635319	tyrB	NMC1596	-	aromatic amino acid aminotransferase
1419	 48.73	0	1630109..1631212	-	367	121635320	trmA	NMC1597	-	tRNA (uracil-5-)-methyltransferase
1420	 59.13	+1	1631355..1632455	+	366	121635321	aroC	NMC1598	-	chorismate synthase
1421	 54.69	0	1632546..1632971	+	141	121635322	-	NMC1599	-	hypothetical protein
1422	 58.16	0	1633045..1635030	-	661	121635323	parE	NMC1600	-	DNA topoisomerase IV subunit B
1423	 57.52	0	1635097..1635621	-	174	121635324	-	NMC1601	-	dinucleoside polyphosphate hydrolase
1424	 54.09	0	1635786..1637081	+	431	121635325	serS	NMC1602	-	seryl-tRNA synthetase
1425	 53.39	0	1637159..1638160	-	333	121635326	ldhA	NMC1603	-	D-lactate dehydrogenase
1426	 57.94	0	1638282..1639358	-	358	121635327	prfA	NMC1604	-	peptide chain release factor 1
1427	 58.06	0	1639448..1640272	-	274	121635328	-	NMC1605	-	hypothetical protein
1428	 59.42	+1	1640221..1641213	-	330	121635329	ans	NMC1606	-	L-asparaginase
1429	 54.39	0	1641280..1641963	-	227	121635330	-	NMC1607	-	DedA family integral membrane protein
1430	 57.08	0	1642152..1643486	-	444	121635331	-	NMC1608	-	putative phosphoglucomutase/phosphomannomutase
1431	 58.33	0	1643616..1644467	-	283	121635332	dhpS	NMC1609	-	dihydropteroate synthase
1432	 54.61	0	1644634..1646856	+	740	121635333	-	NMC1610	-	hypothetical protein
1433	 55.82	0	1646921..1648405	-	494	121635334	-	NMC1611	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
1434	 50.78	0	1648419..1648934	-	171	121635335	-	NMC1613	-	hypothetical protein
1435	 54.48	0	1648941..1649375	-	144	121635336	-	NMC1614	-	putative integral membrane protein
1436	 58.62	0	1649673..1650107	-	144	121635337	-	NMC1615	-	hypothetical protein
1437	 48.69	0	1650282..1650893	+	203	121635338	-	NMC1616	-	insertion element IS1016 transposase
1438	 59.63	+1	1650838..1651974	+	377	121635339	fabF2	NMC1617	-	3-oxoacyl-(acyl carrier protein) synthase II
1439	 44.71	-1	1652172..1652936	+	254	121635340	lgtF	NMC1618	-	beta-1,4-glucosyltransferase
1440	 47.51	0	1652937..1654001	+	354	121635341	rfaK	NMC1619	-	alpha 1,2 N-acetylglucosamine transferase
1441	 42.69	-1	1654040..1654210	+	56	121635342	-	NMC1621	-	hypothetical protein
1442	 52.24	0	1654388..1655725	+	445	121635343	-	NMC1622	-	putative integral membrane ion transporter
1443	 54.61	0	1655897..1656557	-	220	121635344	-	NMC1623	-	putative periplasmic protein
1444	 52.83	0	1656566..1657360	-	264	121635345	thyA	NMC1624	-	thymidylate synthase
1445	 55.96	0	1657744..1659078	+	444	121635346	gdhA	NMC1625	-	glutamate dehydrogenase
1446	 31.71	-2	1659226..1659594	+	122	121635347	-	NMC1626	-	hypothetical protein
1447	 54.02	0	1660081..1660863	-	260	121635348	-	NMC1629	-	GntR family transcriptional regulator
1448	 53.33	0	1661395..1661694	+	99	121635349	-	NMC1630	-	putative integral membrane protein
1449	 55.58	0	1662062..1663513	-	483	121635350	mtrE	NMC1632	-	putative outer membrane lipoprotein
51.80	MEAN

7.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.