IslandPathversion 1.0

IslandPath Analysis: Neisseria meningitidis FAM18



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.80 STD DEV: 7.07
Neisseria meningitidis FAM18, complete genome - 1..2194961
1917 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1231	 53.87	0	1374627..1374962	+	111	121635132	-	NMC1380	-	hypothetical protein
1232	 51.35	0	1377014..1377979	+	321	121635133	-	NMC1381	-	putative transposase for IS1655
1233	 56.06	0	1378364..1379410	-	348	121635134	recA	NMC1382	-	recombinase A
1234	 57.39	0	1379631..1380428	+	265	121635135	aroD	NMC1383	-	3-dehydroquinate dehydratase
1235	 53.06	0	1380391..1382463	+	690	121635136	rep	NMC1385	-	ATP-dependent DNA helicase
1236	 56.94	0	1382716..1383774	-	352	121635137	-	NMC1386	-	impB/mucB/samB family protein
1237	 52.95	0	1385612..1386391	+	259	121635138	-	NMC1389	-	putative ferredoxin NADP+ reductase
1238	 48.27	0	1386601..1388013	-	470	121635139	-	NMC1391	-	putative DNA polymerase III subunit
1239	 51.70	0	1388831..1390006	+	391	121635140	-	NMC1392	-	hypothetical protein
1240	 54.10	0	1390217..1390765	-	182	121635141	-	NMC1393	-	putative inner membrane protein
1241	 53.57	0	1390768..1392264	-	498	121635142	-	NMC1394	-	putative ferredoxin
1242	 55.86	0	1392793..1394772	+	659	121635143	tkt	NMC1395	-	transketolase
1243	 57.74	0	1394920..1396308	+	462	121635144	fumC	NMC1396	-	fumarate hydratase
1244	 55.41	0	1396373..1397296	-	307	121635145	-	NMC1397	-	hypothetical protein
1245	 59.05	+1	1397821..1398345	-	174	121635146	ssb	NMC1398	-	single-stranded binding protein
1246	 56.93	0	1398349..1399734	-	461	121635147	-	NMC1400	-	putative integral membrane transporter
1247	 59.13	+1	1399842..1400465	-	207	121635148	-	NMC1401	-	putative transglycosylase
1248	 47.36	0	1401610..1402101	-	163	121635149	-	NMC1402	-	hypothetical protein
1249	 49.69	0	1403533..1404333	-	266	121635150	opaA	NMC1403	-	pseudogene (opacity protein)
1250	 55.19	0	1405344..1406075	+	243	121635151	-	NMC1404	-	hypothetical protein
1251	 55.14	0	1406192..1407700	+	502	121635152	-	NMC1405	-	exopolyphosphatase
1252	 57.60	0	1408594..1408935	-	113	121635153	-	NMC1407	-	hypothetical protein
1253	 54.90	0	1408941..1409951	-	336	121635154	trpS	NMC1408	-	tryptophanyl-tRNA synthetase
1254	 52.83	0	1410212..1412791	+	859	121635155	clpB	NMC1409	-	ClpB protein
1255	 52.59	0	1412878..1414092	-	404	121635156	-	NMC1410	-	aminotransferase AlaT
1256	 53.33	0	1414181..1414390	-	69	121635157	-	NMC1411	-	putative tautomerase
1257	 54.15	0	1414735..1415541	+	268	121635158	-	NMC1412	-	hypothetical protein
1258	 52.76	0	1415599..1416864	-	421	121635159	-	NMC1413	-	putative glutamate dehydrogenase
1259	 56.68	0	1417271..1417981	+	236	121635160	-	NMC1414	-	phosphoglycolate phosphatase
1260	 53.25	0	1418054..1418515	+	153	121635161	recX	NMC1415	-	recombination regulator RecX
1261	 55.49	0	1418903..1419385	+	160	121635162	-	NMC1417	-	putative acyl-CoA hydrolase
1262	 58.01	0	1419745..1420992	-	415	121635163	-	NMC1418	-	putative membrane peptidase
1263	 56.49	0	1421248..1421994	-	248	121635164	surE	NMC1419	-	SurE protein
1264	 54.98	0	1422011..1423567	-	518	121635165	-	NMC1420	-	hypothetical protein
1265	 53.11	0	1423935..1424723	-	262	121635166	-	NMC1422	-	fimbrial assembly protein
1266	 54.74	0	1424832..1426265	-	477	121635167	gabD	NMC1423	-	succinate semialdehyde dehydrogenase
1267	 47.58	0	1426906..1427235	+	109	121635168	-	NMC1424	-	hypothetical protein
1268	 58.79	0	1427368..1427748	-	126	121635169	-	NMC1425	-	putative lipoprotein
1269	 55.62	0	1428224..1430305	+	693	121635170	-	NMC1426	-	putative integral membrane protein (CstA-like)
1270	 50.14	0	1431830..1434595	+	921	121635171	-	NMC1428	-	putative outer membrane substrate binding protein
1271	 55.17	0	1436088..1437305	-	405	121635172	lysC	NMC1429	-	aspartate kinase
1272	 55.28	0	1437507..1438235	-	242	121635173	rph	NMC1430	-	ribonuclease PH
1273	 55.91	0	1438317..1438781	-	154	121635174	-	NMC1431	-	hypothetical protein
1274	 56.63	0	1438998..1439774	+	258	121635175	-	NMC1432	-	hypothetical protein
1275	 56.14	0	1440019..1440873	+	284	121635176	-	NMC1433	-	hypothetical protein
1276	 56.51	0	1440863..1442122	+	419	121635177	pncB	NMC1435	-	nicotinate phosphoribosyltransferase
1277	 55.96	0	1442214..1443932	+	572	121635178	argS	NMC1436	-	arginyl-tRNA synthetase
1278	 56.17	0	1444447..1445904	+	485	121635179	-	NMC1437	-	hypothetical protein
1279	 55.56	0	1446841..1447587	-	248	121635180	-	NMC1438	-	putative binding-protein-dependent transport systems inner membrane protein
1280	 59.26	+1	1447766..1448467	-	233	121635181	-	NMC1439	-	putative nuclease
1281	 50.89	0	1448506..1449177	-	223	121635182	rpiA	NMC1440	-	ribose-5-phosphate isomerase A
1282	 56.73	0	1449254..1449736	-	160	121635183	ispF	NMC1441	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
1283	 57.83	0	1449768..1450457	-	229	121635184	-	NMC1442	-	hypothetical protein
1284	 56.82	0	1450454..1451215	-	253	121635185	dnaQ	NMC1443	-	DNA polymerase III, epsilon chain
1285	 52.63	0	1451346..1452656	-	436	121635186	-	NMC1444	-	putative integral membrane protein
1286	 46.56	0	1452646..1452834	-	62	121635187	-	NMC1445	-	putative inner membrane protein
1287	 49.67	0	1452831..1453130	-	99	121635188	-	NMC1446	-	hypothetical protein
1288	 57.54	0	1453451..1454677	+	408	121635189	ackA1	NMC1447	-	acetate kinase
1289	 55.48	0	1455193..1457034	-	613	121635190	dipZ	NMC1448	-	thiol:disulfide interchange protein precursor
1290	 57.32	0	1457125..1457595	+	156	121635191	-	NMC1449	-	hypothetical protein
1291	 55.07	0	1457666..1458493	-	275	121635192	-	NMC1450	-	putative transferase
1292	 54.87	0	1458565..1459047	-	160	121635193	-	NMC1451	-	putative peptidyl-prolyl isomerase
1293	 59.43	+1	1459536..1459853	+	105	121635194	-	NMC1452	-	hypothetical protein
1294	 52.12	0	1459911..1461278	+	455	121635195	-	NMC1453	-	hypothetical protein
1295	 40.72	-1	1461459..1463403	-	648	121635196	-	NMC1454	-	putative virulence associated protein
1296	 46.80	0	1463876..1464328	-	150	121635197	smpB	NMC1455	-	SsrA-binding protein
1297	 53.91	0	1464377..1465387	-	336	121635198	rfaF	NMC1456	-	ADP-heptose:LPS heptosyltransferase II
1298	 55.06	0	1465970..1466839	-	289	121635199	-	NMC1457	-	putative methylated-DNA-protein-cysteine methyltransferase
1299	 59.89	+1	1466997..1467557	+	186	121635200	-	NMC1458	-	hypothetical protein
1300	 55.76	0	1468297..1469442	-	381	121635201	dapE	NMC1459	-	succinyl-diaminopimelate desuccinylase
1301	 51.85	0	1469555..1470175	-	206	121635202	-	NMC1460	-	hypothetical protein
1302	 51.60	0	1470209..1470739	-	176	121635203	-	NMC1461	-	hypothetical protein
1303	 52.15	0	1470813..1471418	-	201	121635204	-	NMC1462	-	H.8 outer membrane protein
1304	 55.36	0	1472198..1474948	+	916	121635205	secA	NMC1464	-	preprotein translocase subunit SecA
1305	 52.06	0	1475094..1476866	+	590	121635206	dnaG	NMC1465	-	DNA primase
1306	 51.90	0	1477006..1478982	+	658	121635207	rpoD	NMC1466	-	RNA polymerase sigma factor RpoD
1307	 53.43	0	1481777..1484608	-	943	121635208	lbpA	NMC1468	-	lactoferrin binding protein A
1308	 46.74	0	1484605..1486782	-	725	121635209	lbpB	NMC1469	-	lactoferrin-binding protein
1309	 52.63	0	1489378..1489662	-	94	121635210	-	NMC1470	-	remnant of transposase from insertion element IS1106A2 (fragment)
1310	 55.41	0	1489911..1491545	-	544	121635211	pyrG	NMC1471	-	CTP synthetase
1311	 50.87	0	1491657..1493327	-	556	121635212	fadD	NMC1472	-	long-chain-fatty-acid--CoA-ligase
1312	 54.26	0	1493398..1494501	-	367	121635213	trmU	NMC1473	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
1313	 54.43	0	1494627..1495100	-	157	121635214	-	NMC1474	-	hypothetical protein
1314	 55.73	0	1495215..1495598	-	127	121635215	dgk	NMC1475	-	diacylglycerol kinase
1315	 55.10	0	1495910..1496869	-	319	121635216	gshB	NMC1477	-	glutathione synthetase
1316	 53.72	0	1496959..1498680	-	573	121635217	glnS	NMC1478	-	glutaminyl-tRNA synthetase
1317	 58.53	0	1498759..1499532	-	257	121635218	glpR	NMC1479	-	glycerol 3-phosphate regulon repressor
1318	 56.81	0	1499575..1500477	-	300	121635219	-	NMC1480	-	hypothetical protein
1319	 56.21	0	1500626..1501342	-	238	121635220	-	NMC1481	-	GntR family transcriptional regulator
1320	 53.90	0	1501911..1502333	-	140	121635221	-	NMC1483	-	hypothetical protein
1321	 53.42	0	1502451..1503122	-	223	121635222	-	NMC1485	-	hypothetical protein
1322	 55.34	0	1503138..1503764	-	208	121635223	purN	NMC1486	-	phosphoribosylglycinamide transformylase
1323	 53.41	0	1503871..1504677	-	268	121635224	-	NMC1487	-	putative peptidyl-prolyl isomerase
1324	 56.46	0	1504936..1505376	-	146	121635225	holC	NMC1488	-	DNA polymerase III chi subunit
1325	 55.79	0	1505439..1506845	-	468	121635226	pepA	NMC1489	-	aminopeptidase A
1326	 54.12	0	1507015..1508130	+	371	121635227	-	NMC1490	-	hypothetical protein
1327	 54.81	0	1508127..1509197	+	356	121635228	-	NMC1491	-	hypothetical protein
1328	 55.96	0	1509508..1512093	+	861	121635229	acnB	NMC1492	-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
1329	 54.22	0	1512235..1513230	+	331	121635230	argF	NMC1493	-	ornithine carbamoyltransferase
1330	 51.68	0	1513454..1514467	-	337	121635231	ilvC	NMC1494	-	ketol-acid reductoisomerase
51.80	MEAN

7.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.