IslandPathversion 1.0

IslandPath Analysis: Neisseria meningitidis FAM18



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.80 STD DEV: 7.07
Neisseria meningitidis FAM18, complete genome - 1..2194961
1917 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1175	 54.72	0	1292212..1292772	-	186	121635076	-	NMC1305	-	hypothetical protein
1176	 56.39	0	1293116..1294312	+	398	121635077	argD	NMC1306	-	bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein
1177	 52.05	0	1294415..1295659	-	414	121635078	clpX	NMC1307	-	ATP-dependent protease ATP-binding subunit
1178	 54.57	0	1295850..1296221	+	123	121635079	rbfA	NMC1308	-	ribosome-binding factor A
1179	 56.04	0	1296227..1297186	+	319	121635080	truB	NMC1309	-	tRNA pseudouridine synthase B
1180	 37.14	-2	1297477..1299711	+	744	121635081	-	NMC1310	-	putative type III restriction/modification system modification methylase
1181	 38.13	-1	1299659..1302475	+	938	121635082	-	NMC1311	-	putative type III restriction/modification system enzyme
1182	 52.69	0	1302624..1303796	-	390	121635083	lldA	NMC1312	-	L-lactate dehydrogenase
1183	 58.84	0	1304085..1304531	+	148	121635084	-	NMC1314	-	DNA-binding protein
1184	 55.88	0	1304560..1305774	+	404	121635085	-	NMC1315	-	NifS-like aminotranfserase
1185	 52.45	0	1306035..1306421	+	128	121635086	-	NMC1317	-	scaffold protein
1186	 50.78	0	1306508..1306828	+	106	121635087	-	NMC1318	-	HesB-like protein
1187	 52.69	0	1307091..1307591	+	166	121635088	hscB	NMC1319	-	chaperone protein
1188	 54.89	0	1307689..1310439	+	916	121635089	gyrA	NMC1320	-	DNA gyrase subunit A
1189	 46.35	0	1311521..1311712	+	63	121635090	-	NMC1323	-	putative transposase (fragment)
1190	 49.82	0	1312043..1312594	-	183	121635091	-	NMC1325	-	hypothetical protein
1191	 55.43	0	1312608..1314254	-	548	121635092	pgi	NMC1326	-	glucose-6-phosphate isomerase
1192	 55.37	0	1314375..1315259	-	294	121635093	-	NMC1328	-	putative transcriptional regulator
1193	 57.35	0	1315273..1316259	-	328	121635094	glk	NMC1329	-	glucokinase
1194	 53.45	0	1316240..1316935	-	231	121635095	pgl	NMC1330	-	6-phosphogluconolactonase
1195	 52.70	0	1317215..1318660	-	481	121635096	zwf	NMC1331	-	glucose-6-phosphate 1-dehydrogenase
1196	 57.57	0	1319176..1321011	+	611	121635097	edd	NMC1332	-	phosphogluconate dehydratase
1197	 60.11	+1	1321129..1321830	+	233	121635098	eda	NMC1333	-	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase
1198	 55.05	0	1323283..1324332	+	349	121635099	mutY	NMC1336	-	adenine glycosylase
1199	 43.49	-1	1324749..1325309	+	186	121635100	sodC	NMC1339	-	superoxide dismutase
1200	 50.90	0	1325895..1326395	-	166	121635101	-	NMC1340	-	putative insertion element IS1106 transposase (fragment)
1201	 52.20	0	1326522..1326839	-	105	121635102	-	NMC1341	-	remnant of insertion element IS1106A3 transposase
1202	 52.71	0	1327063..1329291	-	742	121635103	-	NMC1342	-	putative cytolysin secretion ABC transporter
1203	 47.09	0	1329996..1330649	-	217	121635104	-	NMC1343	-	insertion element IS1016 transposase
1204	 38.24	-1	1331255..1332070	+	271	121635105	-	NMC1344	-	putative RTX iron-regulated frpc protein outer membrane
1205	 57.41	0	1338602..1341205	-	867	121635106	pepN	NMC1347	-	aminopeptidase N
1206	 52.20	0	1341417..1342211	-	264	121635107	-	NMC1348	-	hypothetical protein
1207	 51.84	0	1342961..1343830	-	289	121635108	-	NMC1351	-	lipid A biosynthesis lauroyl acyltransferase
1208	 60.96	+1	1343881..1344423	-	180	121635109	ruvC	NMC1352	-	Holliday junction resolvase
1209	 48.33	0	1344420..1344659	-	79	121635110	fis	NMC1353	-	factor-for-inversion-stimulation protein
1210	 59.64	+1	1344689..1345699	-	336	121635111	-	NMC1354	-	hypothetical protein
1211	 57.16	0	1345987..1347438	+	483	121635112	-	NMC1355	-	putative ATP-dependent RNA helicase
1212	 50.62	0	1348134..1349261	+	375	121635113	-	NMC1357	-	hypothetical protein
1213	 53.47	0	1349291..1350169	+	292	121635114	-	NMC1358	-	hypothetical protein
1214	 54.30	0	1350587..1352098	-	503	121635115	lysS	NMC1361	-	lysyl-tRNA synthetase
1215	 53.19	0	1352253..1353506	-	417	121635116	-	NMC1362	-	putative integral membrane protein
1216	 59.90	+1	1353781..1355760	+	659	121635117	-	NMC1363	-	putative aminopeptidase
1217	 53.02	0	1356569..1357726	-	385	121635118	porA	NMC1364	-	porin, class I outer membrane protein
1218	 53.88	0	1358694..1359170	-	158	121635119	greA	NMC1365	-	transcription elongation factor
1219	 57.45	0	1359565..1360866	+	433	121635120	aroA	NMC1366	-	3-phosphoshikimate 1-carboxyvinyltransferase
1220	 57.87	0	1360909..1361442	-	177	121635121	-	NMC1367	-	putative lipoprotein
1221	 56.97	0	1361650..1363227	-	525	121635122	-	NMC1368	-	phopholipase D-family protein
1222	 53.61	0	1363288..1364796	-	502	121635123	-	NMC1370	-	putative integral membrane protein
1223	 55.51	0	1364978..1365757	+	259	121635124	-	NMC1371	-	hypothetical protein
1224	 53.56	0	1365754..1366455	+	233	121635125	-	NMC1372	-	hypothetical protein
1225	 54.09	0	1366452..1367906	+	484	121635126	-	NMC1373	-	iron-sulphur protein
1226	 57.41	0	1368089..1368574	-	161	121635127	purE	NMC1374	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
1227	 55.23	0	1368623..1369339	-	238	121635128	-	NMC1375	-	putative periplasmic protein
1228	 55.31	0	1369339..1370007	-	222	121635129	-	NMC1376	-	putative methyltransferase
1229	 57.66	0	1370347..1372323	+	658	121635130	mutL	NMC1378	-	DNA mismatch repair protein
1230	 58.59	0	1372418..1374547	+	709	121635131	dnaZX	NMC1379	-	DNA polymerase III subunits gamma and tau
1231	 53.87	0	1374627..1374962	+	111	121635132	-	NMC1380	-	hypothetical protein
1232	 51.35	0	1377014..1377979	+	321	121635133	-	NMC1381	-	putative transposase for IS1655
1233	 56.06	0	1378364..1379410	-	348	121635134	recA	NMC1382	-	recombinase A
1234	 57.39	0	1379631..1380428	+	265	121635135	aroD	NMC1383	-	3-dehydroquinate dehydratase
1235	 53.06	0	1380391..1382463	+	690	121635136	rep	NMC1385	-	ATP-dependent DNA helicase
1236	 56.94	0	1382716..1383774	-	352	121635137	-	NMC1386	-	impB/mucB/samB family protein
1237	 52.95	0	1385612..1386391	+	259	121635138	-	NMC1389	-	putative ferredoxin NADP+ reductase
1238	 48.27	0	1386601..1388013	-	470	121635139	-	NMC1391	-	putative DNA polymerase III subunit
1239	 51.70	0	1388831..1390006	+	391	121635140	-	NMC1392	-	hypothetical protein
1240	 54.10	0	1390217..1390765	-	182	121635141	-	NMC1393	-	putative inner membrane protein
1241	 53.57	0	1390768..1392264	-	498	121635142	-	NMC1394	-	putative ferredoxin
1242	 55.86	0	1392793..1394772	+	659	121635143	tkt	NMC1395	-	transketolase
1243	 57.74	0	1394920..1396308	+	462	121635144	fumC	NMC1396	-	fumarate hydratase
1244	 55.41	0	1396373..1397296	-	307	121635145	-	NMC1397	-	hypothetical protein
1245	 59.05	+1	1397821..1398345	-	174	121635146	ssb	NMC1398	-	single-stranded binding protein
1246	 56.93	0	1398349..1399734	-	461	121635147	-	NMC1400	-	putative integral membrane transporter
1247	 59.13	+1	1399842..1400465	-	207	121635148	-	NMC1401	-	putative transglycosylase
1248	 47.36	0	1401610..1402101	-	163	121635149	-	NMC1402	-	hypothetical protein
1249	 49.69	0	1403533..1404333	-	266	121635150	opaA	NMC1403	-	pseudogene (opacity protein)
1250	 55.19	0	1405344..1406075	+	243	121635151	-	NMC1404	-	hypothetical protein
1251	 55.14	0	1406192..1407700	+	502	121635152	-	NMC1405	-	exopolyphosphatase
1252	 57.60	0	1408594..1408935	-	113	121635153	-	NMC1407	-	hypothetical protein
1253	 54.90	0	1408941..1409951	-	336	121635154	trpS	NMC1408	-	tryptophanyl-tRNA synthetase
1254	 52.83	0	1410212..1412791	+	859	121635155	clpB	NMC1409	-	ClpB protein
1255	 52.59	0	1412878..1414092	-	404	121635156	-	NMC1410	-	aminotransferase AlaT
1256	 53.33	0	1414181..1414390	-	69	121635157	-	NMC1411	-	putative tautomerase
1257	 54.15	0	1414735..1415541	+	268	121635158	-	NMC1412	-	hypothetical protein
1258	 52.76	0	1415599..1416864	-	421	121635159	-	NMC1413	-	putative glutamate dehydrogenase
1259	 56.68	0	1417271..1417981	+	236	121635160	-	NMC1414	-	phosphoglycolate phosphatase
1260	 53.25	0	1418054..1418515	+	153	121635161	recX	NMC1415	-	recombination regulator RecX
1261	 55.49	0	1418903..1419385	+	160	121635162	-	NMC1417	-	putative acyl-CoA hydrolase
1262	 58.01	0	1419745..1420992	-	415	121635163	-	NMC1418	-	putative membrane peptidase
1263	 56.49	0	1421248..1421994	-	248	121635164	surE	NMC1419	-	SurE protein
1264	 54.98	0	1422011..1423567	-	518	121635165	-	NMC1420	-	hypothetical protein
1265	 53.11	0	1423935..1424723	-	262	121635166	-	NMC1422	-	fimbrial assembly protein
1266	 54.74	0	1424832..1426265	-	477	121635167	gabD	NMC1423	-	succinate semialdehyde dehydrogenase
1267	 47.58	0	1426906..1427235	+	109	121635168	-	NMC1424	-	hypothetical protein
1268	 58.79	0	1427368..1427748	-	126	121635169	-	NMC1425	-	putative lipoprotein
1269	 55.62	0	1428224..1430305	+	693	121635170	-	NMC1426	-	putative integral membrane protein (CstA-like)
1270	 50.14	0	1431830..1434595	+	921	121635171	-	NMC1428	-	putative outer membrane substrate binding protein
1271	 55.17	0	1436088..1437305	-	405	121635172	lysC	NMC1429	-	aspartate kinase
1272	 55.28	0	1437507..1438235	-	242	121635173	rph	NMC1430	-	ribonuclease PH
1273	 55.91	0	1438317..1438781	-	154	121635174	-	NMC1431	-	hypothetical protein
1274	 56.63	0	1438998..1439774	+	258	121635175	-	NMC1432	-	hypothetical protein
51.80	MEAN

7.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.