IslandPathversion 1.0

IslandPath Analysis: Neisseria meningitidis FAM18



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.80 STD DEV: 7.07
Neisseria meningitidis FAM18, complete genome - 1..2194961
1917 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1139	 35.76	-2	1244642..1244929	-	95	121635040	-	NMC1268	-	hypothetical protein
1140	 54.98	0	1245041..1247068	-	675	121635041	uvrB	NMC1269	-	excinuclease ABC subunit B
1141	 52.86	0	1247397..1248881	-	494	121635042	-	NMC1270	-	putative carboxy-terminal processing protease
1142	 51.77	0	1249008..1250813	-	601	121635043	-	NMC1271	-	hypothetical protein
1143	 52.05	0	1251141..1251701	+	186	121635044	-	NMC1273	-	lipoprotein
1144	 54.46	0	1251703..1252251	+	182	121635045	-	NMC1274	-	hypothetical protein
1145	 56.14	0	1252244..1252699	+	151	121635046	-	NMC1275	-	Holliday junction resolvase-like protein
1146	 52.36	0	1252709..1253365	-	218	121635047	-	NMC1276	-	putative hydrolase
1147	 55.75	0	1253428..1255140	-	570	121635048	proS	NMC1277	-	prolyl-tRNA synthetase
1148	 54.43	0	1255834..1258497	+	887	121635049	aceE	NMC1278	-	pyruvate dehydrogenase subunit E1
1149	 56.12	0	1258647..1260248	+	533	121635050	aceF	NMC1279	-	dihydrolipoamide acetyltransferase
1150	 56.49	0	1260325..1262112	+	595	121635051	lpdA	NMC1280	-	dihydrolipoamide dehydrogenase (E3 component of pyruvate and 2-oxoglutarate dehydrogenase complexes)
1151	 47.37	0	1262472..1264010	-	512	121635052	-	NMC1281	-	hypothetical protein
1152	 52.73	0	1264146..1266269	-	707	121635053	-	NMC1282	-	putative TonB-dependent receptor protein
1153	 52.80	0	1266539..1267324	-	261	121635054	-	NMC1283	-	inositol monophosphate family protein
1154	 55.75	0	1267505..1268383	+	292	121635055	-	NMC1284	-	SpoU methylase family protein
1155	 58.02	0	1268423..1269301	+	292	121635056	-	NMC1285	-	hypothetical protein
1156	 55.21	0	1269337..1270593	+	418	121635057	-	NMC1286	-	SUN-family protein
1157	 51.72	0	1271689..1272123	+	144	121635058	-	NMC1287	-	hypothetical protein
1158	 57.51	0	1272172..1273515	-	447	121635059	-	NMC1288	-	putative aldehyde dehydrogenase
1159	 57.56	0	1273520..1274233	-	237	121635060	-	NMC1289	-	hypothetical protein
1160	 53.00	0	1274315..1274614	+	99	121635061	gatC	NMC1290	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
1161	 57.95	0	1274677..1276122	+	481	121635062	gatA	NMC1291	-	Glu-tRNA(Gln) amidotransferase subunit A
1162	 52.09	0	1276119..1277051	+	310	121635063	-	NMC1292	-	hypothetical protein
1163	 54.65	0	1277094..1278524	+	476	121635064	gatB	NMC1293	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
1164	 56.48	0	1278616..1279626	+	336	121635065	-	NMC1294	-	iron/sulphur-binding oxidoreductase
1165	 57.66	0	1279755..1280387	-	210	121635066	pdxH	NMC1295	-	pyridoxamine 5'-phosphate oxidase
1166	 59.92	+1	1281044..1281814	+	256	121635067	-	NMC1296	-	putative pseudouridine synthase
1167	 57.00	0	1281883..1283424	-	513	121635068	-	NMC1297	-	putative integral membrane transporter
1168	 56.71	0	1284671..1286026	-	451	121635069	xseA	NMC1298	-	exodeoxyribonuclease VII large subunit
1169	 57.79	0	1286223..1287044	+	273	121635070	nadE	NMC1299	-	NH(3)-dependent NAD synthetase
1170	 52.74	0	1287112..1287585	-	157	121635071	-	NMC1300	-	hypothetical protein
1171	 54.05	0	1287883..1288215	+	110	121635072	trxA	NMC1301	-	thioredoxin I
1172	 51.31	0	1288268..1289185	-	305	121635073	-	NMC1302	-	hypothetical protein
1173	 55.51	0	1289543..1290931	+	462	121635074	-	NMC1303	-	putative ATP-dependent RNA helicase
1174	 61.08	+1	1291573..1292127	-	184	121635075	-	NMC1304	-	putative membrane lipoprotein
1175	 54.72	0	1292212..1292772	-	186	121635076	-	NMC1305	-	hypothetical protein
1176	 56.39	0	1293116..1294312	+	398	121635077	argD	NMC1306	-	bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein
1177	 52.05	0	1294415..1295659	-	414	121635078	clpX	NMC1307	-	ATP-dependent protease ATP-binding subunit
1178	 54.57	0	1295850..1296221	+	123	121635079	rbfA	NMC1308	-	ribosome-binding factor A
1179	 56.04	0	1296227..1297186	+	319	121635080	truB	NMC1309	-	tRNA pseudouridine synthase B
1180	 37.14	-2	1297477..1299711	+	744	121635081	-	NMC1310	-	putative type III restriction/modification system modification methylase
1181	 38.13	-1	1299659..1302475	+	938	121635082	-	NMC1311	-	putative type III restriction/modification system enzyme
1182	 52.69	0	1302624..1303796	-	390	121635083	lldA	NMC1312	-	L-lactate dehydrogenase
1183	 58.84	0	1304085..1304531	+	148	121635084	-	NMC1314	-	DNA-binding protein
1184	 55.88	0	1304560..1305774	+	404	121635085	-	NMC1315	-	NifS-like aminotranfserase
1185	 52.45	0	1306035..1306421	+	128	121635086	-	NMC1317	-	scaffold protein
1186	 50.78	0	1306508..1306828	+	106	121635087	-	NMC1318	-	HesB-like protein
1187	 52.69	0	1307091..1307591	+	166	121635088	hscB	NMC1319	-	chaperone protein
1188	 54.89	0	1307689..1310439	+	916	121635089	gyrA	NMC1320	-	DNA gyrase subunit A
1189	 46.35	0	1311521..1311712	+	63	121635090	-	NMC1323	-	putative transposase (fragment)
1190	 49.82	0	1312043..1312594	-	183	121635091	-	NMC1325	-	hypothetical protein
1191	 55.43	0	1312608..1314254	-	548	121635092	pgi	NMC1326	-	glucose-6-phosphate isomerase
1192	 55.37	0	1314375..1315259	-	294	121635093	-	NMC1328	-	putative transcriptional regulator
1193	 57.35	0	1315273..1316259	-	328	121635094	glk	NMC1329	-	glucokinase
1194	 53.45	0	1316240..1316935	-	231	121635095	pgl	NMC1330	-	6-phosphogluconolactonase
1195	 52.70	0	1317215..1318660	-	481	121635096	zwf	NMC1331	-	glucose-6-phosphate 1-dehydrogenase
1196	 57.57	0	1319176..1321011	+	611	121635097	edd	NMC1332	-	phosphogluconate dehydratase
1197	 60.11	+1	1321129..1321830	+	233	121635098	eda	NMC1333	-	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase
1198	 55.05	0	1323283..1324332	+	349	121635099	mutY	NMC1336	-	adenine glycosylase
1199	 43.49	-1	1324749..1325309	+	186	121635100	sodC	NMC1339	-	superoxide dismutase
1200	 50.90	0	1325895..1326395	-	166	121635101	-	NMC1340	-	putative insertion element IS1106 transposase (fragment)
1201	 52.20	0	1326522..1326839	-	105	121635102	-	NMC1341	-	remnant of insertion element IS1106A3 transposase
1202	 52.71	0	1327063..1329291	-	742	121635103	-	NMC1342	-	putative cytolysin secretion ABC transporter
1203	 47.09	0	1329996..1330649	-	217	121635104	-	NMC1343	-	insertion element IS1016 transposase
1204	 38.24	-1	1331255..1332070	+	271	121635105	-	NMC1344	-	putative RTX iron-regulated frpc protein outer membrane
1205	 57.41	0	1338602..1341205	-	867	121635106	pepN	NMC1347	-	aminopeptidase N
1206	 52.20	0	1341417..1342211	-	264	121635107	-	NMC1348	-	hypothetical protein
1207	 51.84	0	1342961..1343830	-	289	121635108	-	NMC1351	-	lipid A biosynthesis lauroyl acyltransferase
1208	 60.96	+1	1343881..1344423	-	180	121635109	ruvC	NMC1352	-	Holliday junction resolvase
1209	 48.33	0	1344420..1344659	-	79	121635110	fis	NMC1353	-	factor-for-inversion-stimulation protein
1210	 59.64	+1	1344689..1345699	-	336	121635111	-	NMC1354	-	hypothetical protein
1211	 57.16	0	1345987..1347438	+	483	121635112	-	NMC1355	-	putative ATP-dependent RNA helicase
1212	 50.62	0	1348134..1349261	+	375	121635113	-	NMC1357	-	hypothetical protein
1213	 53.47	0	1349291..1350169	+	292	121635114	-	NMC1358	-	hypothetical protein
1214	 54.30	0	1350587..1352098	-	503	121635115	lysS	NMC1361	-	lysyl-tRNA synthetase
1215	 53.19	0	1352253..1353506	-	417	121635116	-	NMC1362	-	putative integral membrane protein
1216	 59.90	+1	1353781..1355760	+	659	121635117	-	NMC1363	-	putative aminopeptidase
1217	 53.02	0	1356569..1357726	-	385	121635118	porA	NMC1364	-	porin, class I outer membrane protein
1218	 53.88	0	1358694..1359170	-	158	121635119	greA	NMC1365	-	transcription elongation factor
1219	 57.45	0	1359565..1360866	+	433	121635120	aroA	NMC1366	-	3-phosphoshikimate 1-carboxyvinyltransferase
1220	 57.87	0	1360909..1361442	-	177	121635121	-	NMC1367	-	putative lipoprotein
1221	 56.97	0	1361650..1363227	-	525	121635122	-	NMC1368	-	phopholipase D-family protein
1222	 53.61	0	1363288..1364796	-	502	121635123	-	NMC1370	-	putative integral membrane protein
1223	 55.51	0	1364978..1365757	+	259	121635124	-	NMC1371	-	hypothetical protein
1224	 53.56	0	1365754..1366455	+	233	121635125	-	NMC1372	-	hypothetical protein
1225	 54.09	0	1366452..1367906	+	484	121635126	-	NMC1373	-	iron-sulphur protein
1226	 57.41	0	1368089..1368574	-	161	121635127	purE	NMC1374	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
1227	 55.23	0	1368623..1369339	-	238	121635128	-	NMC1375	-	putative periplasmic protein
1228	 55.31	0	1369339..1370007	-	222	121635129	-	NMC1376	-	putative methyltransferase
1229	 57.66	0	1370347..1372323	+	658	121635130	mutL	NMC1378	-	DNA mismatch repair protein
1230	 58.59	0	1372418..1374547	+	709	121635131	dnaZX	NMC1379	-	DNA polymerase III subunits gamma and tau
1231	 53.87	0	1374627..1374962	+	111	121635132	-	NMC1380	-	hypothetical protein
1232	 51.35	0	1377014..1377979	+	321	121635133	-	NMC1381	-	putative transposase for IS1655
1233	 56.06	0	1378364..1379410	-	348	121635134	recA	NMC1382	-	recombinase A
1234	 57.39	0	1379631..1380428	+	265	121635135	aroD	NMC1383	-	3-dehydroquinate dehydratase
1235	 53.06	0	1380391..1382463	+	690	121635136	rep	NMC1385	-	ATP-dependent DNA helicase
1236	 56.94	0	1382716..1383774	-	352	121635137	-	NMC1386	-	impB/mucB/samB family protein
1237	 52.95	0	1385612..1386391	+	259	121635138	-	NMC1389	-	putative ferredoxin NADP+ reductase
1238	 48.27	0	1386601..1388013	-	470	121635139	-	NMC1391	-	putative DNA polymerase III subunit
51.80	MEAN

7.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.