IslandPathversion 1.0

IslandPath Analysis: Neisseria meningitidis FAM18



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.80 STD DEV: 7.07
Neisseria meningitidis FAM18, complete genome - 1..2194961
1917 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
66	 59.95	+1	88308..89780	-	490	121633967	pykA	NMC0074	-	pyruvate kinase
67	 41.52	-1	90041..90370	+	109	121633968	-	NMC0075	-	IS1016 transposase, partial CDS
68	 38.40	-1	91332..91568	+	78	121633969	-	NMC0080	-	hypothetical protein
69	 34.21	-2	91562..91789	+	75	121633970	-	NMC0081	-	hypothetical protein
70	 22.75	-2	92161..92349	+	62	121633971	-	NMC0083	-	putative inner membrane protein
71	 47.06	0	92356..92508	+	50	121633972	-	NMC0083A	-	hypothetical protein
72	 26.81	-2	92609..92746	+	45	121633973	-	NMC0084	-	putative inner membrane protein
73	 37.44	-2	92791..94056	+	421	121633974	-	NMC0085	-	putative protein export protein
74	 34.29	-2	94059..96146	+	695	121633975	-	NMC0086	-	putative protein export protein
75	 53.87	0	96416..97423	+	335	121633976	-	NMC0088	-	putative IS1106 transposase
76	 34.69	-2	97605..97751	-	48	121633977	-	NMC0089	-	hypothetical protein
77	 58.88	+1	98556..99107	+	183	121633978	-	NMC0092	-	putative inner membrane protein
78	 37.73	-1	99384..100043	-	219	121633979	-	NMC0093	-	putative periplasmic peptidase (bacteriocin resistance)
79	 22.36	-2	100024..100260	-	78	121633980	-	NMC0094	-	putative inner membrane protein
80	 39.35	-1	100382..101057	-	224	121633981	-	NMC0095	-	hypothetical protein
81	 58.49	0	101184..101342	-	52	121633982	-	NMC0096	-	putative lipoprotein
82	 57.77	0	101339..102181	-	280	121633983	-	NMC0097	-	hypothetical protein
83	 56.79	0	102420..103340	+	306	121633984	pyrB	NMC0098	-	aspartate carbamoyltransferase catalytic subunit
84	 55.12	0	103350..103808	+	152	121633985	pyrI	NMC0099	-	aspartate carbamoyltransferase regulatory subunit
85	 52.85	0	103873..104538	+	221	121633986	-	NMC0100	-	putative inner membrane protein
86	 56.24	0	104601..105818	-	405	121633987	-	NMC0101	-	hypothetical protein
87	 55.75	0	106002..106505	+	167	121633988	def	NMC0102	-	peptide deformylase
88	 59.65	+1	106592..107518	+	308	121633989	fmt	NMC0103	-	methionyl-tRNA formyltransferase
89	 57.94	0	107597..108856	+	419	121633990	-	NMC0104	-	SUN-family protein
90	 54.67	0	108822..109421	+	199	121633991	-	NMC0105	-	hypothetical protein
91	 56.80	0	109421..111538	+	705	121633992	-	NMC0106	-	putative two-component sensor kinase
92	 56.65	0	111531..112808	+	425	121633993	-	NMC0107	-	putative two-component trancriptional regulator
93	 60.22	+1	112899..114092	+	397	121633994	smf	NMC0108	-	SMF-family protein
94	 53.25	0	114118..114579	+	153	121633995	-	NMC0109	-	SMG-family protein
95	 53.06	0	114651..116957	+	768	121633996	topA	NMC0110	-	DNA topoisomerase I
96	 44.54	-1	117030..117725	-	231	121633997	-	NMC0111	-	hypothetical protein
97	 33.45	-2	117745..118297	-	183	121633998	-	NMC0112	-	putative inner membrane protein
98	 46.03	0	118416..118793	+	125	121633999	-	NMC0113	-	hypothetical protein
99	 53.86	0	118882..119451	+	189	121634000	-	NMC0114	-	hypothetical protein
100	 49.60	0	119574..119825	+	83	121634001	-	NMC0115	-	putative ferredoxin
101	 54.18	0	120242..121426	+	394	121634002	-	NMC0116	-	elongation factor Tu
102	 37.28	-2	121623..121901	+	92	121634003	secE	NMC0117	-	preprotein translocase subunit SecE
103	 43.95	-1	121903..122439	+	178	121634004	nusG	NMC0118	-	transcription antitermination protein NusG
104	 44.83	0	122540..122974	+	144	121634005	rplK	NMC0119	-	50S ribosomal protein L11
105	 43.97	-1	122974..123669	+	231	121634006	rplA	NMC0120	-	50S ribosomal protein L1
106	 47.31	0	123899..124399	+	166	121634007	rplJ	NMC0121	-	50S ribosomal protein L10
107	 44.09	-1	124457..124828	+	123	121634008	rplL	NMC0122	-	50S ribosomal protein L7/L12
108	 49.82	0	125013..129197	+	1394	121634009	rpoB	NMC0123	-	DNA-directed RNA polymerase subunit beta
109	 51.05	0	129354..133529	+	1391	121634010	rpoC	NMC0124	-	DNA-directed RNA polymerase subunit beta'
110	 50.27	0	133787..134158	+	123	121634011	rpsL	NMC0125	-	30S ribosomal protein S12
111	 49.68	0	134276..134746	+	156	121634012	rpsG	NMC0126	-	30S ribosomal protein S7
112	 49.91	0	134765..136870	+	701	121634013	fusA	NMC0127	-	elongation factor G
113	 54.18	0	136958..138142	+	394	121634014	-	NMC0128	-	elongation factor Tu
114	 47.12	0	138160..138471	+	103	121634015	rpsJ	NMC0129	-	30S ribosomal protein S10
115	 50.23	0	139475..140119	+	214	121634016	rplC	NMC0132	-	50S ribosomal protein L3
116	 46.70	0	140119..140739	+	206	121634017	rplD	NMC0133	-	50S ribosomal protein L4
117	 44.24	-1	140730..141050	+	106	121634018	rplW	NMC0134	-	50S ribosomal protein L23
118	 51.80	0	141056..141889	+	277	121634019	rplB	NMC0135	-	50S ribosomal protein L2
119	 45.16	0	141896..142174	+	92	121634020	rpsS	NMC0136	-	30S ribosomal protein S19
120	 42.12	-1	142183..142512	+	109	121634021	rplV	NMC0137	-	50S ribosomal protein L22
121	 45.02	0	142522..143214	+	230	121634022	rpsC	NMC0138	-	30S ribosomal protein S3
122	 46.28	0	143198..143614	+	138	121634023	rplP	NMC0139	-	50S ribosomal protein L16
123	 38.54	-1	143614..143805	+	63	121634024	rpmC	NMC0140	-	50S ribosomal protein L29
124	 36.74	-2	143805..144068	+	87	121634025	rpsQ	NMC0141	-	30S ribosomal protein S17
125	 44.17	-1	144290..144658	+	122	121634026	rplN	NMC0142	-	50S ribosomal protein L14
126	 38.58	-1	144670..144993	+	107	121634027	rplX	NMC0143	-	50S ribosomal protein L24
127	 38.52	-1	145003..145542	+	179	121634028	rplE	NMC0144	-	50S ribosomal protein L5
128	 45.75	0	145545..145850	+	101	121634029	rpsN	NMC0145	-	30S ribosomal protein S14
129	 39.44	-1	145866..146258	+	130	121634030	rpsH	NMC0146	-	30S ribosomal protein S8
130	 40.82	-1	146272..146805	+	177	121634031	rplF	NMC0147	-	50S ribosomal protein L6
131	 43.79	-1	146819..147172	+	117	121634032	rplR	NMC0148	-	50S ribosomal protein L18
132	 43.74	-1	147191..147709	+	172	121634033	rpsE	NMC0149	-	30S ribosomal protein S5
133	 41.40	-1	147702..147887	+	61	121634034	rpmD	NMC0150	-	50S ribosomal protein L30
134	 43.22	-1	147889..148323	+	144	121634035	rplO	NMC0151	-	50S ribosomal protein L15
135	 37.07	-2	148335..149645	+	436	121634036	secY	NMC0152	-	preprotein translocase subunit SecY
136	 37.90	-1	149650..149868	+	72	121634037	infA	NMC0153	-	translation initiation factor IF-1
137	 38.60	-1	149889..150002	+	37	121634038	rpmJ	NMC0154	-	50S ribosomal protein L36
138	 46.56	0	150068..150430	+	120	121634039	rpsM	NMC0155	-	30S ribosomal protein S13
139	 45.20	0	150450..150845	+	131	121634040	rpsK	NMC0156	-	30S ribosomal protein S11
140	 44.28	-1	150865..151485	+	206	121634041	rpsD	NMC0157	-	30S ribosomal protein S4
141	 42.45	-1	151511..152497	+	328	121634042	rpoA	NMC0158	-	DNA-directed RNA polymerase subunit alpha
142	 46.34	0	152521..152889	+	122	121634043	rplQ	NMC0159	-	50S ribosomal protein L17
143	 45.10	0	153036..153749	+	237	121634044	minC	NMC0160	-	septum formation inhibitor
144	 46.69	0	153777..154592	+	271	121634045	minD	NMC0161	-	septum site-determining protein
145	 44.32	-1	154596..154859	+	87	121634046	minE	NMC0162	-	cell division topological specificity factor
146	 53.09	0	154863..155783	+	306	121634047	oxyR	NMC0163	-	putative hydrogen peroxide-inducible genes activator
147	 54.90	0	156113..158950	-	945	121634048	valS	NMC0164	-	valyl-tRNA synthetase
148	 54.44	0	159047..159856	-	269	121634049	-	NMC0165	-	zinc transporter ZupT
149	 54.34	0	160037..161293	-	418	121634050	dadA	NMC0166	-	D-amino acid dehydrogenase small subunit
150	 53.74	0	161372..162763	-	463	121634051	-	NMC0167	-	putative amino-acid transporter
151	 58.94	+1	163121..163897	-	258	121634052	lpxA	NMC0168	-	UDP-N-acetylglucosamine acyltransferase
152	 35.55	-2	163940..164662	-	240	121634053	-	NMC0169	-	hypothetical protein
153	 56.89	0	164827..165276	-	149	121634054	fabZ	NMC0170	-	(3R)-hydroxymyristoyl-ACP dehydratase
154	 60.17	+1	165310..166356	-	348	121634055	lpxD	NMC0171	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
155	 53.09	0	166389..166889	-	166	121634056	-	NMC0172	-	putative outer membrane protein
156	 55.93	0	166955..169348	-	797	121634057	omp85	NMC0173	-	outer membrane protein OMP85
157	 59.13	+1	169405..170745	-	446	121634058	-	NMC0174	-	putative inner membrane protease
158	 58.25	0	170780..172015	-	411	121634059	dxr	NMC0175	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
159	 55.76	0	172020..172817	-	265	121634060	cdsA	NMC0176	-	phosphatidate cytidylyltransferase
160	 54.26	0	172821..173594	-	257	121634061	uppS	NMC0177	-	putative undecaprenyl diphosphate synthase
161	 54.30	0	173623..174180	-	185	121634062	frr	NMC0178	-	ribosome recycling factor
162	 61.26	+1	174361..175488	-	375	121634063	-	NMC0179	-	putative inner membrane protein
163	 60.33	+1	175739..176227	+	162	121634064	-	NMC0180	-	putative inner membrane protein
164	 57.05	0	176323..176946	+	207	121634065	gidB	NMC0181	-	glucose-inhibited division protein B
165	 58.91	+1	177045..177818	+	257	121634066	-	NMC0182	-	hypothetical protein
51.80	MEAN

7.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.