IslandPathversion 1.0

IslandPath Analysis: Neisseria meningitidis FAM18



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.80 STD DEV: 7.07
Neisseria meningitidis FAM18, complete genome - 1..2194961
1917 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1084	 55.83	0	1176920..1178017	-	365	121634985	-	NMC1200	-	hypothetical protein
1085	 49.94	0	1178099..1179730	-	543	121634986	-	NMC1201	-	hypothetical protein
1086	 55.87	0	1179830..1180042	-	70	121634987	-	NMC1202	-	putative mercuric ion binding protein
1087	 56.78	0	1180672..1182108	+	478	121634988	-	NMC1203	-	putative polysaccharide modification protein
1088	 56.53	0	1182119..1183105	+	328	121634989	-	NMC1204	-	putative periplasmic protein
1089	 61.56	+1	1183102..1184295	+	397	121634990	-	NMC1205	-	putative periplasmic protein
1090	 54.61	0	1184505..1186097	+	530	121634991	-	NMC1207	-	acyl-CoA synthetase
1091	 51.48	0	1186187..1188214	-	675	121634992	-	NMC1208	-	putative transmembrane transport protein
1092	 57.35	0	1188503..1190509	+	668	121634993	gcr	NMC1210	-	site-specific recombinase
1093	 54.67	0	1190632..1191723	-	363	121634994	mltB	NMC1212	-	murein hydrolase
1094	 55.66	0	1191872..1193425	-	517	121634995	-	NMC1213	-	putative oxidoreductase
1095	 57.15	0	1193484..1197611	+	1375	121634996	mfd	NMC1214	-	transcription-repair coupling factor
1096	 53.91	0	1197760..1198143	+	127	121634997	panD	NMC1216	-	aspartate alpha-decarboxylase
1097	 51.48	0	1198165..1199007	+	280	121634998	kdsA	NMC1218	-	2-dehydro-3-deoxyphosphooctonate aldolase
1098	 54.20	0	1199022..1199462	+	146	121634999	-	NMC1219	-	hypothetical protein
1099	 54.62	0	1199509..1200795	+	428	121635000	eno	NMC1220	-	phosphopyruvate hydratase
1100	 48.39	0	1200809..1201087	+	92	121635001	-	NMC1221	-	hypothetical protein
1101	 54.30	0	1201128..1201418	-	96	121635002	-	NMC1222	-	putative iron-sulphur binding protein
1102	 47.88	0	1201643..1202776	-	377	121635003	nrdB	NMC1223	-	ribonucleotide-diphosphate reductase subunit beta
1103	 41.45	-1	1202990..1203913	-	307	121635004	-	NMC1225	-	hypothetical protein
1104	 52.06	0	1203936..1206215	-	759	121635005	nrdA	NMC1226	-	ribonucleotide-diphosphate reductase subunit alpha
1105	 54.49	0	1206744..1207055	+	103	121635006	-	NMC1229	-	hypothetical protein
1106	 55.34	0	1207366..1208133	-	255	121635007	-	NMC1231	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
1107	 55.16	0	1208221..1209063	-	280	121635008	fpg	NMC1232	-	formamidopyrimidine-DNA glycosylase
1108	 55.26	0	1209100..1209765	-	221	121635009	-	NMC1233	-	hypothetical protein
1109	 56.50	0	1209944..1211920	+	658	121635010	-	NMC1234	-	putative membrane bound murein transglycosylase
1110	 50.79	0	1211988..1212680	+	230	121635011	-	NMC1235	-	putative ribosomal small subunit pseudouridine synthase
1111	 56.32	0	1214782..1215438	+	218	121635012	cmk	NMC1237	-	cytidylate kinase
1112	 50.61	0	1215567..1217279	+	570	121635013	rpsA	NMC1238	-	30S ribosomal protein S1
1113	 49.84	0	1217290..1217604	+	104	121635014	hip	NMC1239	-	integration host factor beta-subunit
1114	 40.69	-1	1217954..1218361	-	135	121635015	-	NMC1240	-	putative transcriptional regulator
1115	 47.93	0	1218482..1219618	+	378	121635016	adhC	NMC1241	-	alcohol dehydrogenase class-III
1116	 46.38	0	1219627..1220454	+	275	121635017	esd	NMC1242	-	esterase D
1117	 52.43	0	1220845..1221996	+	383	121635018	-	NMC1243	-	putative nucleotide-binding protein
1118	 50.00	0	1222055..1222480	+	141	121635019	ndk	NMC1244	-	nucleoside diphosphate kinase
1119	 51.05	0	1222623..1223717	+	364	121635020	-	NMC1245	-	hypothetical protein
1120	 51.75	0	1223684..1224481	+	265	121635021	-	NMC1246	-	putative lipoprotein
1121	 52.05	0	1224497..1225762	+	421	121635022	ispG	NMC1247	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
1122	 48.78	0	1225819..1226433	-	204	121635023	clpP	NMC1248	-	endopeptidase
1123	 49.24	0	1226529..1227842	-	437	121635024	tig	NMC1250	-	trigger factor
1124	 54.98	0	1228048..1230486	-	812	121635025	-	NMC1251	-	ftsK-like cell division/stress response protein
1125	 55.34	0	1230685..1231920	+	411	121635026	uraA	NMC1252	-	uracil permease
1126	 52.17	0	1231972..1232454	-	160	121635027	-	NMC1253	-	hypothetical protein
1127	 53.47	0	1232560..1232963	+	134	121635028	-	NMC1254	-	hypothetical protein
1128	 55.69	0	1233037..1233783	+	248	121635029	pss	NMC1255	-	phosphatidylserine synthase
1129	 55.14	0	1233784..1234590	+	268	121635030	-	NMC1256	-	hypothetical protein
1130	 51.43	0	1235378..1235830	-	150	121635031	rplI	NMC1257	-	50S ribosomal protein L9
1131	 44.16	-1	1235847..1236077	-	76	121635032	rpsR	NMC1258	-	30S ribosomal protein S18
1132	 42.90	-1	1236084..1236386	-	100	121635033	priB	NMC1259	-	primosomal replication protein
1133	 47.70	0	1236387..1236755	-	122	121635034	rpsF	NMC1260	-	30S ribosomal protein S6
1134	 54.99	0	1236910..1237860	-	316	121635035	trxB	NMC1261	-	thioredoxin reductase
1135	 55.90	0	1237849..1240161	+	770	121635036	-	NMC1262	-	putative cation-transporting ATPase
1136	 55.11	0	1240216..1242102	+	628	121635037	uvrC	NMC1263	-	excinuclease ABC subunit C
1137	 55.54	0	1242189..1243623	+	478	121635038	-	NMC1265	-	hypothetical protein
1138	 56.21	0	1243745..1244461	+	238	121635039	trmB	NMC1267	-	tRNA (guanine-N(7))-methyltransferase
1139	 35.76	-2	1244642..1244929	-	95	121635040	-	NMC1268	-	hypothetical protein
1140	 54.98	0	1245041..1247068	-	675	121635041	uvrB	NMC1269	-	excinuclease ABC subunit B
1141	 52.86	0	1247397..1248881	-	494	121635042	-	NMC1270	-	putative carboxy-terminal processing protease
1142	 51.77	0	1249008..1250813	-	601	121635043	-	NMC1271	-	hypothetical protein
1143	 52.05	0	1251141..1251701	+	186	121635044	-	NMC1273	-	lipoprotein
1144	 54.46	0	1251703..1252251	+	182	121635045	-	NMC1274	-	hypothetical protein
1145	 56.14	0	1252244..1252699	+	151	121635046	-	NMC1275	-	Holliday junction resolvase-like protein
1146	 52.36	0	1252709..1253365	-	218	121635047	-	NMC1276	-	putative hydrolase
1147	 55.75	0	1253428..1255140	-	570	121635048	proS	NMC1277	-	prolyl-tRNA synthetase
1148	 54.43	0	1255834..1258497	+	887	121635049	aceE	NMC1278	-	pyruvate dehydrogenase subunit E1
1149	 56.12	0	1258647..1260248	+	533	121635050	aceF	NMC1279	-	dihydrolipoamide acetyltransferase
1150	 56.49	0	1260325..1262112	+	595	121635051	lpdA	NMC1280	-	dihydrolipoamide dehydrogenase (E3 component of pyruvate and 2-oxoglutarate dehydrogenase complexes)
1151	 47.37	0	1262472..1264010	-	512	121635052	-	NMC1281	-	hypothetical protein
1152	 52.73	0	1264146..1266269	-	707	121635053	-	NMC1282	-	putative TonB-dependent receptor protein
1153	 52.80	0	1266539..1267324	-	261	121635054	-	NMC1283	-	inositol monophosphate family protein
1154	 55.75	0	1267505..1268383	+	292	121635055	-	NMC1284	-	SpoU methylase family protein
1155	 58.02	0	1268423..1269301	+	292	121635056	-	NMC1285	-	hypothetical protein
1156	 55.21	0	1269337..1270593	+	418	121635057	-	NMC1286	-	SUN-family protein
1157	 51.72	0	1271689..1272123	+	144	121635058	-	NMC1287	-	hypothetical protein
1158	 57.51	0	1272172..1273515	-	447	121635059	-	NMC1288	-	putative aldehyde dehydrogenase
1159	 57.56	0	1273520..1274233	-	237	121635060	-	NMC1289	-	hypothetical protein
1160	 53.00	0	1274315..1274614	+	99	121635061	gatC	NMC1290	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
1161	 57.95	0	1274677..1276122	+	481	121635062	gatA	NMC1291	-	Glu-tRNA(Gln) amidotransferase subunit A
1162	 52.09	0	1276119..1277051	+	310	121635063	-	NMC1292	-	hypothetical protein
1163	 54.65	0	1277094..1278524	+	476	121635064	gatB	NMC1293	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
1164	 56.48	0	1278616..1279626	+	336	121635065	-	NMC1294	-	iron/sulphur-binding oxidoreductase
1165	 57.66	0	1279755..1280387	-	210	121635066	pdxH	NMC1295	-	pyridoxamine 5'-phosphate oxidase
1166	 59.92	+1	1281044..1281814	+	256	121635067	-	NMC1296	-	putative pseudouridine synthase
1167	 57.00	0	1281883..1283424	-	513	121635068	-	NMC1297	-	putative integral membrane transporter
1168	 56.71	0	1284671..1286026	-	451	121635069	xseA	NMC1298	-	exodeoxyribonuclease VII large subunit
1169	 57.79	0	1286223..1287044	+	273	121635070	nadE	NMC1299	-	NH(3)-dependent NAD synthetase
1170	 52.74	0	1287112..1287585	-	157	121635071	-	NMC1300	-	hypothetical protein
1171	 54.05	0	1287883..1288215	+	110	121635072	trxA	NMC1301	-	thioredoxin I
1172	 51.31	0	1288268..1289185	-	305	121635073	-	NMC1302	-	hypothetical protein
1173	 55.51	0	1289543..1290931	+	462	121635074	-	NMC1303	-	putative ATP-dependent RNA helicase
1174	 61.08	+1	1291573..1292127	-	184	121635075	-	NMC1304	-	putative membrane lipoprotein
1175	 54.72	0	1292212..1292772	-	186	121635076	-	NMC1305	-	hypothetical protein
1176	 56.39	0	1293116..1294312	+	398	121635077	argD	NMC1306	-	bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein
1177	 52.05	0	1294415..1295659	-	414	121635078	clpX	NMC1307	-	ATP-dependent protease ATP-binding subunit
1178	 54.57	0	1295850..1296221	+	123	121635079	rbfA	NMC1308	-	ribosome-binding factor A
1179	 56.04	0	1296227..1297186	+	319	121635080	truB	NMC1309	-	tRNA pseudouridine synthase B
1180	 37.14	-2	1297477..1299711	+	744	121635081	-	NMC1310	-	putative type III restriction/modification system modification methylase
1181	 38.13	-1	1299659..1302475	+	938	121635082	-	NMC1311	-	putative type III restriction/modification system enzyme
1182	 52.69	0	1302624..1303796	-	390	121635083	lldA	NMC1312	-	L-lactate dehydrogenase
1183	 58.84	0	1304085..1304531	+	148	121635084	-	NMC1314	-	DNA-binding protein
51.80	MEAN

7.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.