IslandPathversion 1.0

IslandPath Analysis: Neisseria meningitidis FAM18



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.80 STD DEV: 7.07
Neisseria meningitidis FAM18, complete genome - 1..2194961
1917 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1040	 53.02	0	1125952..1126530	-	192	121634941	-	NMC1149	-	putative molybdopterin-guanine dinucleotide biosynthesis protein A
1041	 51.44	0	1126772..1128544	+	590	121634942	-	NMC1150	-	putative two-component system sensor kinase
1042	 54.34	0	1128541..1129197	+	218	121634943	-	NMC1151	-	putative two-component system response regulator
1043	 50.92	0	1129671..1130705	-	344	121634944	purM	NMC1152	-	phosphoribosylaminoimidazole synthetase
1044	 54.72	0	1131464..1132141	+	225	121634945	-	NMC1154	-	hypothetical protein
1045	 54.88	0	1132134..1132727	+	197	121634946	ribA	NMC1155	-	GTP cyclohydrolase II
1046	 45.42	0	1132895..1133909	+	338	121634947	-	NMC1156	-	pseudogene (putative glycosyl transferase)
1047	 58.22	0	1134131..1135468	+	445	121634948	ribB	NMC1157	-	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein
1048	 41.28	-1	1135776..1136102	-	108	121634949	-	NMC1158	-	putative type I restriction enzyme system modification protein
1049	 56.45	0	1136390..1137700	-	436	121634950	-	NMC1159	-	recombination factor protein RarA
1050	 33.95	-2	1137949..1138434	+	161	121634951	-	NMC1160	-	hypothetical protein
1051	 54.40	0	1139484..1140437	-	317	121634952	-	NMC1162	-	lysR family transcriptional regulator
1052	 51.98	0	1140612..1142123	+	503	121634953	-	NMC1163	-	putative integral membrane protein
1053	 58.33	0	1142375..1142746	+	123	121634954	-	NMC1164	-	putative lipoprotein
1054	 53.83	0	1142819..1144228	+	469	121634955	thrC	NMC1165	-	threonine synthase
1055	 56.10	0	1144274..1145068	+	264	121634956	-	NMC1166	-	hypothetical protein
1056	 52.25	0	1145256..1146032	+	258	121634957	fpr	NMC1168	-	ferredoxin--NADP reductase
1057	 59.10	+1	1146700..1149210	-	836	121634958	-	NMC1170	-	putative P-type cation-transporting ATPase
1058	 57.85	0	1149168..1150346	-	392	121634959	-	NMC1171	-	hypothetical protein
1059	 57.01	0	1150351..1151655	-	434	121634960	-	NMC1172	-	putative periplasmic protein
1060	 52.48	0	1151784..1152509	-	241	121634961	-	NMC1173	-	hypothetical protein
1061	 56.93	0	1152582..1153259	-	225	121634962	radC	NMC1174	-	DNA repair protein RadC
1062	 52.96	0	1153382..1154731	-	449	121634963	gshA	NMC1175	-	glutamate--cysteine ligase
1063	 56.95	0	1154991..1156400	+	469	121634964	leuC	NMC1176	-	isopropylmalate isomerase large subunit
1064	 55.23	0	1156446..1156751	+	101	121634965	-	NMC1178	-	putative lipoprotein
1065	 53.58	0	1156813..1157454	+	213	121634966	leuD	NMC1179	-	isopropylmalate isomerase small subunit
1066	 40.16	-1	1157624..1158893	+	423	121634967	-	NMC1180	-	DNA modification methylase
1067	 37.43	-2	1158909..1159640	+	242	121634968	-	NMC1181	-	type II restriction endonuclease
1068	 54.34	0	1159674..1160744	+	356	121634969	leuB	NMC1182	-	3-isopropylmalate dehydrogenase
1069	 53.72	0	1160907..1161470	+	187	121634970	-	NMC1183	-	putative periplasmic protein
1070	 53.00	0	1161930..1163327	+	465	121634971	aspA	NMC1185	-	aspartate ammonia-lyase
1071	 53.54	0	1163399..1164274	-	291	121634972	-	NMC1186	-	putative integral membrane protein
1072	 54.91	0	1164276..1164998	-	240	121634973	-	NMC1188	-	putative dnaJ-family protein
1073	 50.21	0	1165020..1165499	-	159	121634974	-	NMC1189	-	hypothetical protein
1074	 59.26	+1	1165560..1165937	+	125	121634975	-	NMC1190	-	hypothetical protein
1075	 55.48	0	1165969..1166835	+	288	121634976	-	NMC1191	-	hypothetical protein
1076	 52.81	0	1166933..1167892	+	319	121634977	-	NMC1192	-	hypothetical protein
1077	 48.37	0	1167986..1170925	-	979	121634978	-	NMC1193	-	putative type III restriction-modification system endonuclease protein
1078	 45.11	0	1170938..1172912	-	658	121634979	-	NMC1194	-	pseudogene (putative type III restriction-modification system modification protein)
1079	 51.43	0	1173028..1173585	-	185	121634980	ppiA	NMC1195	-	putative peptidyl-prolyl cis-trans isomerase A
1080	 53.29	0	1173650..1174576	-	308	121634981	-	NMC1196	-	hypothetical protein
1081	 52.02	0	1174564..1175157	-	197	121634982	-	NMC1197	-	putative cation uptake regulator
1082	 54.30	0	1175111..1175668	-	185	121634983	-	NMC1198	-	putative protein-tyrosine-phosphatase
1083	 41.94	-1	1175691..1176806	-	371	121634984	-	NMC1199	-	hypothetical protein
1084	 55.83	0	1176920..1178017	-	365	121634985	-	NMC1200	-	hypothetical protein
1085	 49.94	0	1178099..1179730	-	543	121634986	-	NMC1201	-	hypothetical protein
1086	 55.87	0	1179830..1180042	-	70	121634987	-	NMC1202	-	putative mercuric ion binding protein
1087	 56.78	0	1180672..1182108	+	478	121634988	-	NMC1203	-	putative polysaccharide modification protein
1088	 56.53	0	1182119..1183105	+	328	121634989	-	NMC1204	-	putative periplasmic protein
1089	 61.56	+1	1183102..1184295	+	397	121634990	-	NMC1205	-	putative periplasmic protein
1090	 54.61	0	1184505..1186097	+	530	121634991	-	NMC1207	-	acyl-CoA synthetase
1091	 51.48	0	1186187..1188214	-	675	121634992	-	NMC1208	-	putative transmembrane transport protein
1092	 57.35	0	1188503..1190509	+	668	121634993	gcr	NMC1210	-	site-specific recombinase
1093	 54.67	0	1190632..1191723	-	363	121634994	mltB	NMC1212	-	murein hydrolase
1094	 55.66	0	1191872..1193425	-	517	121634995	-	NMC1213	-	putative oxidoreductase
1095	 57.15	0	1193484..1197611	+	1375	121634996	mfd	NMC1214	-	transcription-repair coupling factor
1096	 53.91	0	1197760..1198143	+	127	121634997	panD	NMC1216	-	aspartate alpha-decarboxylase
1097	 51.48	0	1198165..1199007	+	280	121634998	kdsA	NMC1218	-	2-dehydro-3-deoxyphosphooctonate aldolase
1098	 54.20	0	1199022..1199462	+	146	121634999	-	NMC1219	-	hypothetical protein
1099	 54.62	0	1199509..1200795	+	428	121635000	eno	NMC1220	-	phosphopyruvate hydratase
1100	 48.39	0	1200809..1201087	+	92	121635001	-	NMC1221	-	hypothetical protein
1101	 54.30	0	1201128..1201418	-	96	121635002	-	NMC1222	-	putative iron-sulphur binding protein
1102	 47.88	0	1201643..1202776	-	377	121635003	nrdB	NMC1223	-	ribonucleotide-diphosphate reductase subunit beta
1103	 41.45	-1	1202990..1203913	-	307	121635004	-	NMC1225	-	hypothetical protein
1104	 52.06	0	1203936..1206215	-	759	121635005	nrdA	NMC1226	-	ribonucleotide-diphosphate reductase subunit alpha
1105	 54.49	0	1206744..1207055	+	103	121635006	-	NMC1229	-	hypothetical protein
1106	 55.34	0	1207366..1208133	-	255	121635007	-	NMC1231	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
1107	 55.16	0	1208221..1209063	-	280	121635008	fpg	NMC1232	-	formamidopyrimidine-DNA glycosylase
1108	 55.26	0	1209100..1209765	-	221	121635009	-	NMC1233	-	hypothetical protein
1109	 56.50	0	1209944..1211920	+	658	121635010	-	NMC1234	-	putative membrane bound murein transglycosylase
1110	 50.79	0	1211988..1212680	+	230	121635011	-	NMC1235	-	putative ribosomal small subunit pseudouridine synthase
1111	 56.32	0	1214782..1215438	+	218	121635012	cmk	NMC1237	-	cytidylate kinase
1112	 50.61	0	1215567..1217279	+	570	121635013	rpsA	NMC1238	-	30S ribosomal protein S1
1113	 49.84	0	1217290..1217604	+	104	121635014	hip	NMC1239	-	integration host factor beta-subunit
1114	 40.69	-1	1217954..1218361	-	135	121635015	-	NMC1240	-	putative transcriptional regulator
1115	 47.93	0	1218482..1219618	+	378	121635016	adhC	NMC1241	-	alcohol dehydrogenase class-III
1116	 46.38	0	1219627..1220454	+	275	121635017	esd	NMC1242	-	esterase D
1117	 52.43	0	1220845..1221996	+	383	121635018	-	NMC1243	-	putative nucleotide-binding protein
1118	 50.00	0	1222055..1222480	+	141	121635019	ndk	NMC1244	-	nucleoside diphosphate kinase
1119	 51.05	0	1222623..1223717	+	364	121635020	-	NMC1245	-	hypothetical protein
1120	 51.75	0	1223684..1224481	+	265	121635021	-	NMC1246	-	putative lipoprotein
1121	 52.05	0	1224497..1225762	+	421	121635022	ispG	NMC1247	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
1122	 48.78	0	1225819..1226433	-	204	121635023	clpP	NMC1248	-	endopeptidase
1123	 49.24	0	1226529..1227842	-	437	121635024	tig	NMC1250	-	trigger factor
1124	 54.98	0	1228048..1230486	-	812	121635025	-	NMC1251	-	ftsK-like cell division/stress response protein
1125	 55.34	0	1230685..1231920	+	411	121635026	uraA	NMC1252	-	uracil permease
1126	 52.17	0	1231972..1232454	-	160	121635027	-	NMC1253	-	hypothetical protein
1127	 53.47	0	1232560..1232963	+	134	121635028	-	NMC1254	-	hypothetical protein
1128	 55.69	0	1233037..1233783	+	248	121635029	pss	NMC1255	-	phosphatidylserine synthase
1129	 55.14	0	1233784..1234590	+	268	121635030	-	NMC1256	-	hypothetical protein
1130	 51.43	0	1235378..1235830	-	150	121635031	rplI	NMC1257	-	50S ribosomal protein L9
1131	 44.16	-1	1235847..1236077	-	76	121635032	rpsR	NMC1258	-	30S ribosomal protein S18
1132	 42.90	-1	1236084..1236386	-	100	121635033	priB	NMC1259	-	primosomal replication protein
1133	 47.70	0	1236387..1236755	-	122	121635034	rpsF	NMC1260	-	30S ribosomal protein S6
1134	 54.99	0	1236910..1237860	-	316	121635035	trxB	NMC1261	-	thioredoxin reductase
1135	 55.90	0	1237849..1240161	+	770	121635036	-	NMC1262	-	putative cation-transporting ATPase
1136	 55.11	0	1240216..1242102	+	628	121635037	uvrC	NMC1263	-	excinuclease ABC subunit C
1137	 55.54	0	1242189..1243623	+	478	121635038	-	NMC1265	-	hypothetical protein
1138	 56.21	0	1243745..1244461	+	238	121635039	trmB	NMC1267	-	tRNA (guanine-N(7))-methyltransferase
1139	 35.76	-2	1244642..1244929	-	95	121635040	-	NMC1268	-	hypothetical protein
51.80	MEAN

7.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.