IslandPathversion 1.0

IslandPath Analysis: Neisseria meningitidis FAM18



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.80 STD DEV: 7.07
Neisseria meningitidis FAM18, complete genome - 1..2194961
1917 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1008	 52.62	0	1096347..1096766	-	139	121634909	-	NMC1115	-	hypothetical protein
1009	 54.24	0	1096835..1097494	+	219	121634910	-	NMC1116	-	uracil-DNA glycosylase
1010	 50.37	0	1097553..1098086	+	177	121634911	-	NMC1117	-	hypothetical protein
1011	 52.67	0	1098201..1098650	-	149	121634912	-	NMC1118	-	putative transcriptional regulator
1012	 54.02	0	1099113..1100069	-	318	121634913	-	NMC1120	-	putative transposase
1013	 47.31	0	1100551..1100643	+	30	121634914	-	NMC1121	-	hypothetical protein
1014	 48.00	0	1100666..1100815	+	49	121634915	-	NMC1122	-	hypothetical protein
1015	 42.95	-1	1100906..1101061	+	51	121634916	-	NMC1123	-	putative transposase (fragment)
1016	 45.06	0	1101279..1101602	-	107	121634917	-	NMC1124	-	hypothetical protein
1017	 48.45	0	1101647..1102162	-	171	121634918	-	NMC1125	-	putative periplasmic protein
1018	 51.33	0	1102628..1104550	-	640	121634919	-	NMC1126	-	putative ABC transporter ATP-binding protein
1019	 48.61	0	1104627..1105058	-	143	121634920	-	NMC1127	-	hypothetical protein
1020	 54.40	0	1105037..1106503	+	488	121634921	hom	NMC1128	-	homoserine dehydrogenase
1021	 50.57	0	1106496..1106930	+	144	121634922	-	NMC1129	-	hypothetical protein
1022	 54.07	0	1106989..1107258	-	89	121634923	hupB	NMC1130	-	putative DNA-binding protein
1023	 53.53	0	1107440..1109890	-	816	121634924	lon	NMC1131	-	putative ATP-dependent protease
1024	 56.12	0	1110249..1111244	+	331	121634925	-	NMC1132	-	hypothetical protein
1025	 58.02	0	1111272..1113017	-	581	121634926	recD	NMC1133	-	exodeoxyribonuclease V alpha subunit
1026	 58.81	0	1113085..1113771	-	228	121634927	-	NMC1134	-	putative ABC-transporter ATP-binding protein
1027	 54.97	0	1113773..1115020	-	415	121634928	-	NMC1135	-	putative integral membrane protein
1028	 55.33	0	1115213..1115503	+	96	121634929	-	NMC1136	-	putative periplasmic protein
1029	 54.27	0	1115559..1116179	-	206	121634930	recR	NMC1137	-	putative recombination protein
1030	 52.31	0	1116243..1117781	-	512	121634931	-	NMC1138	-	putative peptidyl-prolyl cis-trans isomerase
1031	 52.53	0	1117836..1118210	-	124	121634932	-	NMC1139	-	hypothetical protein
1032	 52.79	0	1118360..1119988	+	542	121634933	-	NMC1140	-	putative ABC-transporter ATP-binding protein
1033	 58.53	0	1120060..1121313	+	417	121634934	cca	NMC1142	-	multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase
1034	 53.40	0	1121536..1121844	+	102	121634935	-	NMC1143	-	hypothetical protein
1035	 59.59	+1	1121926..1122957	+	343	121634936	ruvB	NMC1144	-	Holliday junction DNA helicase B
1036	 54.32	0	1122980..1123708	-	242	121634937	rpe	NMC1145	-	ribulose-phosphate 3-epimerase
1037	 53.10	0	1123854..1124288	+	144	121634938	-	NMC1146	-	putative periplasmic protein
1038	 53.70	0	1124301..1125164	-	286	121634939	-	NMC1147	-	hypothetical protein
1039	 53.56	0	1125172..1125789	-	205	161723298	ribC	NMC1148	-	riboflavin synthase subunit alpha
1040	 53.02	0	1125952..1126530	-	192	121634941	-	NMC1149	-	putative molybdopterin-guanine dinucleotide biosynthesis protein A
1041	 51.44	0	1126772..1128544	+	590	121634942	-	NMC1150	-	putative two-component system sensor kinase
1042	 54.34	0	1128541..1129197	+	218	121634943	-	NMC1151	-	putative two-component system response regulator
1043	 50.92	0	1129671..1130705	-	344	121634944	purM	NMC1152	-	phosphoribosylaminoimidazole synthetase
1044	 54.72	0	1131464..1132141	+	225	121634945	-	NMC1154	-	hypothetical protein
1045	 54.88	0	1132134..1132727	+	197	121634946	ribA	NMC1155	-	GTP cyclohydrolase II
1046	 45.42	0	1132895..1133909	+	338	121634947	-	NMC1156	-	pseudogene (putative glycosyl transferase)
1047	 58.22	0	1134131..1135468	+	445	121634948	ribB	NMC1157	-	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein
1048	 41.28	-1	1135776..1136102	-	108	121634949	-	NMC1158	-	putative type I restriction enzyme system modification protein
1049	 56.45	0	1136390..1137700	-	436	121634950	-	NMC1159	-	recombination factor protein RarA
1050	 33.95	-2	1137949..1138434	+	161	121634951	-	NMC1160	-	hypothetical protein
1051	 54.40	0	1139484..1140437	-	317	121634952	-	NMC1162	-	lysR family transcriptional regulator
1052	 51.98	0	1140612..1142123	+	503	121634953	-	NMC1163	-	putative integral membrane protein
1053	 58.33	0	1142375..1142746	+	123	121634954	-	NMC1164	-	putative lipoprotein
1054	 53.83	0	1142819..1144228	+	469	121634955	thrC	NMC1165	-	threonine synthase
1055	 56.10	0	1144274..1145068	+	264	121634956	-	NMC1166	-	hypothetical protein
1056	 52.25	0	1145256..1146032	+	258	121634957	fpr	NMC1168	-	ferredoxin--NADP reductase
1057	 59.10	+1	1146700..1149210	-	836	121634958	-	NMC1170	-	putative P-type cation-transporting ATPase
1058	 57.85	0	1149168..1150346	-	392	121634959	-	NMC1171	-	hypothetical protein
1059	 57.01	0	1150351..1151655	-	434	121634960	-	NMC1172	-	putative periplasmic protein
1060	 52.48	0	1151784..1152509	-	241	121634961	-	NMC1173	-	hypothetical protein
1061	 56.93	0	1152582..1153259	-	225	121634962	radC	NMC1174	-	DNA repair protein RadC
1062	 52.96	0	1153382..1154731	-	449	121634963	gshA	NMC1175	-	glutamate--cysteine ligase
1063	 56.95	0	1154991..1156400	+	469	121634964	leuC	NMC1176	-	isopropylmalate isomerase large subunit
1064	 55.23	0	1156446..1156751	+	101	121634965	-	NMC1178	-	putative lipoprotein
1065	 53.58	0	1156813..1157454	+	213	121634966	leuD	NMC1179	-	isopropylmalate isomerase small subunit
1066	 40.16	-1	1157624..1158893	+	423	121634967	-	NMC1180	-	DNA modification methylase
1067	 37.43	-2	1158909..1159640	+	242	121634968	-	NMC1181	-	type II restriction endonuclease
1068	 54.34	0	1159674..1160744	+	356	121634969	leuB	NMC1182	-	3-isopropylmalate dehydrogenase
1069	 53.72	0	1160907..1161470	+	187	121634970	-	NMC1183	-	putative periplasmic protein
1070	 53.00	0	1161930..1163327	+	465	121634971	aspA	NMC1185	-	aspartate ammonia-lyase
1071	 53.54	0	1163399..1164274	-	291	121634972	-	NMC1186	-	putative integral membrane protein
1072	 54.91	0	1164276..1164998	-	240	121634973	-	NMC1188	-	putative dnaJ-family protein
1073	 50.21	0	1165020..1165499	-	159	121634974	-	NMC1189	-	hypothetical protein
1074	 59.26	+1	1165560..1165937	+	125	121634975	-	NMC1190	-	hypothetical protein
1075	 55.48	0	1165969..1166835	+	288	121634976	-	NMC1191	-	hypothetical protein
1076	 52.81	0	1166933..1167892	+	319	121634977	-	NMC1192	-	hypothetical protein
1077	 48.37	0	1167986..1170925	-	979	121634978	-	NMC1193	-	putative type III restriction-modification system endonuclease protein
1078	 45.11	0	1170938..1172912	-	658	121634979	-	NMC1194	-	pseudogene (putative type III restriction-modification system modification protein)
1079	 51.43	0	1173028..1173585	-	185	121634980	ppiA	NMC1195	-	putative peptidyl-prolyl cis-trans isomerase A
1080	 53.29	0	1173650..1174576	-	308	121634981	-	NMC1196	-	hypothetical protein
1081	 52.02	0	1174564..1175157	-	197	121634982	-	NMC1197	-	putative cation uptake regulator
1082	 54.30	0	1175111..1175668	-	185	121634983	-	NMC1198	-	putative protein-tyrosine-phosphatase
1083	 41.94	-1	1175691..1176806	-	371	121634984	-	NMC1199	-	hypothetical protein
1084	 55.83	0	1176920..1178017	-	365	121634985	-	NMC1200	-	hypothetical protein
1085	 49.94	0	1178099..1179730	-	543	121634986	-	NMC1201	-	hypothetical protein
1086	 55.87	0	1179830..1180042	-	70	121634987	-	NMC1202	-	putative mercuric ion binding protein
1087	 56.78	0	1180672..1182108	+	478	121634988	-	NMC1203	-	putative polysaccharide modification protein
1088	 56.53	0	1182119..1183105	+	328	121634989	-	NMC1204	-	putative periplasmic protein
1089	 61.56	+1	1183102..1184295	+	397	121634990	-	NMC1205	-	putative periplasmic protein
1090	 54.61	0	1184505..1186097	+	530	121634991	-	NMC1207	-	acyl-CoA synthetase
1091	 51.48	0	1186187..1188214	-	675	121634992	-	NMC1208	-	putative transmembrane transport protein
1092	 57.35	0	1188503..1190509	+	668	121634993	gcr	NMC1210	-	site-specific recombinase
1093	 54.67	0	1190632..1191723	-	363	121634994	mltB	NMC1212	-	murein hydrolase
1094	 55.66	0	1191872..1193425	-	517	121634995	-	NMC1213	-	putative oxidoreductase
1095	 57.15	0	1193484..1197611	+	1375	121634996	mfd	NMC1214	-	transcription-repair coupling factor
1096	 53.91	0	1197760..1198143	+	127	121634997	panD	NMC1216	-	aspartate alpha-decarboxylase
1097	 51.48	0	1198165..1199007	+	280	121634998	kdsA	NMC1218	-	2-dehydro-3-deoxyphosphooctonate aldolase
1098	 54.20	0	1199022..1199462	+	146	121634999	-	NMC1219	-	hypothetical protein
1099	 54.62	0	1199509..1200795	+	428	121635000	eno	NMC1220	-	phosphopyruvate hydratase
1100	 48.39	0	1200809..1201087	+	92	121635001	-	NMC1221	-	hypothetical protein
1101	 54.30	0	1201128..1201418	-	96	121635002	-	NMC1222	-	putative iron-sulphur binding protein
1102	 47.88	0	1201643..1202776	-	377	121635003	nrdB	NMC1223	-	ribonucleotide-diphosphate reductase subunit beta
1103	 41.45	-1	1202990..1203913	-	307	121635004	-	NMC1225	-	hypothetical protein
1104	 52.06	0	1203936..1206215	-	759	121635005	nrdA	NMC1226	-	ribonucleotide-diphosphate reductase subunit alpha
1105	 54.49	0	1206744..1207055	+	103	121635006	-	NMC1229	-	hypothetical protein
1106	 55.34	0	1207366..1208133	-	255	121635007	-	NMC1231	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
1107	 55.16	0	1208221..1209063	-	280	121635008	fpg	NMC1232	-	formamidopyrimidine-DNA glycosylase
51.80	MEAN

7.07	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.