IslandPath Analysis: Neisseria meningitidis Z2491



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.77   STD DEV: 7.09
Neisseria meningitidis Z2491, complete genome - 1..2184406
2049 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 56.39	0	38..358	-	106	15793035	-	NMA0001	-	hypothetical protein
2	 52.30	0	414..2438	-	674	15793036	nuoL	NMA0002	-	NADH dehydrogenase subunit L
3	 39.77	-1	2487..2828	-	113	15793037	-	NMA0003	-	hypothetical protein
4	 46.35	0	2952..3527	-	191	15793038	-	NMA0004	-	hypothetical protein
5	 47.71	0	3561..3866	-	101	15793039	nuoK	NMA0005	-	NADH dehydrogenase subunit K
6	 50.89	0	3863..4534	-	223	15793040	nuoJ	NMA0006	-	NADH dehydrogenase I chain J
7	 32.49	-2	4570..5277	-	235	15793041	-	NMA0007	-	hypothetical protein
8	 51.46	0	5308..5787	-	159	15793042	nuoI	NMA0008	-	NADH dehydrogenase subunit I
9	 51.72	0	5867..6943	-	358	15793043	nuoH	NMA0009	-	NADH dehydrogenase I chain H
10	 55.31	0	6946..9207	-	753	15793044	nuoG	NMA0010	-	NADH dehydrogenase subunit G
11	 38.89	-1	9489..9758	-	89	15793045	-	NMA0011	-	hypothetical protein
12	 39.33	-1	9778..9927	-	49	15793046	-	NMA0012	-	hypothetical protein
13	 33.11	-2	10044..10481	-	145	15793047	-	NMA0013	-	hypothetical protein
14	 53.76	0	10481..11782	-	433	15793048	nuoF	NMA0014	-	NADH dehydrogenase I chain F
15	 51.69	0	12172..12645	-	157	15793049	nuoE	NMA0015	-	NADH dehydrogenase subunit E
16	 54.73	0	12645..13901	-	418	15793050	nuoD	NMA0016	-	NADH dehydrogenase subunit D
17	 51.01	0	13891..14484	-	197	15793051	nuoC	NMA0017	-	NADH dehydrogenase subunit C
18	 56.31	0	14497..14979	-	160	15793052	nuoB	NMA0018	-	NADH dehydrogenase subunit B
19	 51.82	0	14970..15326	-	118	15793053	nuoA	NMA0019	-	NADH dehydrogenase I chain A
20	 48.82	0	15777..17261	-	494	15793054	-	NMA0020	-	hypothetical protein
21	 46.86	0	17251..17871	-	206	15793055	-	NMA0021	-	hypothetical protein
22	 36.77	-2	18070..18447	-	125	15793056	-	NMA0022	-	IS1016 transposase
23	 26.97	-2	18500..18829	+	109	15793057	-	NMA0023	-	hypothetical protein
24	 30.56	-2	18983..19198	+	71	15793058	-	NMA0024	-	hypothetical protein
25	 45.74	0	19388..19927	-	179	15793059	-	NMA0025	-	hypothetical protein
26	 57.34	0	20284..22491	-	735	15793060	uvrD	NMA0027	-	DNA helicase II
27	 56.94	0	22675..23322	+	215	15793061	-	NMA0028	-	hypothetical protein
28	 56.67	0	23319..24248	+	309	15793062	-	NMA0029	-	hypothetical protein
29	 58.81	0	24235..24972	+	245	15793063	-	NMA0030	-	hypothetical protein
30	 54.69	0	25101..26294	+	397	15793064	-	NMA0031	-	transmembrane transport protein
31	 55.70	0	26402..27094	+	230	15793065	-	NMA0032	-	hypothetical protein
32	 51.24	0	27359..28324	+	321	15793066	-	NMA0033	-	IS1655 transposase
33	 57.04	0	28626..31316	-	896	15793067	glnE	NMA0035	-	glutamate-ammonia-ligase adenylyltransferase
34	 39.88	-1	31491..31826	-	111	15793068	-	NMA0036	-	hypothetical protein
35	 40.30	-1	32080..32553	-	157	15793069	-	NMA0037	-	hypothetical protein
36	 40.78	-1	32606..32887	-	93	15793070	-	NMA0038	-	hypothetical protein
37	 36.11	-2	32974..33297	-	107	15793071	-	NMA0039	-	hypothetical protein
38	 33.33	-2	33299..33430	-	43	15793072	-	NMA0040	-	hypothetical protein
39	 50.56	0	33435..33614	-	59	15793073	-	NMA0041	-	hypothetical protein
40	 52.88	0	33630..34637	-	335	15793074	pyrD	NMA0042	-	dihydroorotate dehydrogenase 2
41	 47.26	0	34869..35105	+	78	15793075	acpP	NMA0043	-	acyl carrier protein
42	 59.94	+1	35272..36519	+	415	15793076	fabF	NMA0044	-	3-oxoacyl-(acyl carrier protein) synthase II
43	 57.26	0	36762..37718	-	318	15793077	-	NMA0046	-	transmembrane transport protein
44	 60.51	+1	38144..39361	+	405	15793078	-	NMA0047	-	transmembrane transport protein
45	 46.56	0	39717..40850	+	377	15793079	pglA	NMA0048	-	glycosyltransferase
46	 55.16	0	41790..42641	-	283	15793080	-	NMA0049	-	RNA polymerase sigma factor
47	 58.28	0	42989..44503	+	504	15793081	katA	NMA0050	-	catalase
48	 56.06	0	44683..45012	+	109	15793082	-	NMA0051	-	hypothetical protein
49	 59.44	+1	44988..45554	+	188	15793083	-	NMA0052	-	integral membrane protein
50	 54.35	0	45672..45947	-	91	15793084	-	NMA0053	-	hypothetical protein
51	 56.60	0	45987..48023	-	678	15793085	prlC	NMA0054	-	oligopeptidase A
52	 55.83	0	48111..49097	-	328	15793086	-	NMA0055	-	integral membrane protein
53	 56.17	0	49253..51643	+	796	15793087	gyrB	NMA0056	-	DNA gyrase subunit B
54	 60.68	+1	51962..53281	+	439	15793088	sdaA	NMA0057	-	L-serine dehydratase
55	 55.69	0	54687..56663	-	658	15793089	-	NMA0060	-	transmembrane transport protein
56	 63.45	+1	56812..57651	+	279	15793090	-	NMA0061	-	ferredoxin
57	 56.59	0	57851..58882	+	343	15793091	gapA	NMA0062	-	glyceraldehyde-3-phosphate dehydrogenase
58	 57.85	0	59138..59863	-	241	15793092	aat	NMA0063	-	leucyl/phenylalanyl-tRNA--protein transferase
59	 51.95	0	59933..60367	-	144	15793093	fur	NMA0064	-	ferric uptake regulation protein
60	 57.41	0	60586..60963	+	125	15793094	-	NMA0065	-	lipoprotein
61	 61.23	+1	60973..61782	+	269	15793095	dapB	NMA0066	-	dihydrodipicolinate reductase
62	 36.33	-2	62042..62341	-	99	15793096	-	NMA0067	-	hypothetical protein
63	 33.33	-2	62455..62700	-	81	15793097	-	NMA0068	-	hypothetical protein
64	 58.53	0	62708..63862	-	384	15793098	lpxB	NMA0069	-	lipid-A-disaccharide synthase
65	 57.50	0	63928..64920	-	330	15793099	rluC	NMA0070	-	ribosomal large subunit pseudouridine synthase C
66	 59.28	+1	65414..68173	+	919	15793100	rne	NMA0071	-	ribonuclease E
67	 60.40	+1	68960..69949	-	329	15793101	pdxA	NMA0072	-	pyridoxal phosphate biosynthetic protein
68	 55.60	0	70109..71536	+	475	15793102	-	NMA0073	-	amino-acid transport protein
69	 57.55	0	71870..73756	+	628	15793103	gidA	NMA0074	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
70	 57.78	0	73825..74409	+	194	15793104	rnhB	NMA0075	-	ribonuclease HII
71	 59.17	+1	75357..76130	-	257	15793105	-	NMA0076	-	parA family protein
72	 56.89	0	76229..76852	-	207	15793106	gidB	NMA0077	-	glucose-inhibited division protein B
73	 60.29	+1	76948..77433	-	161	15793107	-	NMA0078	-	integral membrane protein
74	 61.79	+1	77843..78970	+	375	15793108	-	NMA0079	-	integral membrane protein
75	 54.12	0	79151..79708	+	185	15793109	frr	NMA0080	-	ribosome recycling factor
76	 54.48	0	79764..80510	+	248	15793110	uppS	NMA0081	-	undecaprenyl diphosphate synthase
77	 56.39	0	80513..81310	+	265	15793111	cdsA	NMA0082	-	phosphatidate cytidylyltransferase
78	 58.31	0	81366..82550	+	394	15793112	dxr	NMA0083	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
79	 59.36	+1	82585..83925	+	446	15793113	-	NMA0084	-	integral membrane protein
80	 56.14	0	83982..86375	+	797	15793114	omp85	NMA0085	-	outer membrane protein OMP85
81	 53.29	0	86441..86941	+	166	15793115	-	NMA0086	-	hypothetical protein
82	 59.96	+1	86974..88017	+	347	15793116	lpxD	NMA0087	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
83	 57.56	0	88053..88502	+	149	15793117	fabZ	NMA0088	-	(3R)-hydroxymyristoyl-ACP dehydratase
84	 36.27	-2	88813..89493	+	226	15793118	-	NMA0089	-	hypothetical protein
85	 59.07	+1	89536..90312	+	258	15793119	lpxA	NMA0090	-	UDP-N-acetylglucosamine acyltransferase
86	 53.95	0	90669..92060	+	463	15793120	-	NMA0091	-	amino-acid transporter
87	 55.13	0	92139..93395	+	418	15793121	dadA	NMA0092	-	D-amino acid dehydrogenase small subunit
88	 54.44	0	93576..94385	+	269	15793122	-	NMA0093	-	zinc transporter ZupT
89	 55.00	0	94482..97319	+	945	15793123	valS	NMA0094	-	valyl-tRNA synthetase
90	 50.64	0	97474..97629	+	51	15793124	-	NMA0095	-	hypothetical protein
91	 50.77	0	97690..98079	-	129	15793125	-	NMA0096	-	hypothetical protein
92	 52.66	0	98653..99573	-	306	15793126	oxyR	NMA0098	-	hydrogen peroxide-inducible genes activator
93	 43.94	-1	99577..99840	-	87	15793127	minE	NMA0099	-	cell division topological specificity factor
94	 46.69	0	99844..100659	-	271	15793128	minD	NMA0100	-	septum site-determining protein
95	 45.10	0	100688..101401	-	237	15793129	minC	NMA0101	-	septum formation inhibitor
96	 46.34	0	101548..101916	-	122	15793130	rplQ	NMA0102	-	50S ribosomal protein L17
97	 42.45	-1	101940..102926	-	328	15793131	rpoA	NMA0103	-	DNA-directed RNA polymerase subunit alpha
98	 44.61	-1	102952..103572	-	206	15793132	rpsD	NMA0104	-	30S ribosomal protein S4
99	 44.95	0	103592..103987	-	131	15793133	rpsK	NMA0105	-	30S ribosomal protein S11
100	 46.56	0	104007..104369	-	120	15793134	rpsM	NMA0106	-	30S ribosomal protein S13
51.77	MEAN

7.09	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.