IslandPathversion 1.0

IslandPath Analysis: Neisseria meningitidis Z2491



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.77 STD DEV: 7.09
Neisseria meningitidis Z2491, complete genome - 1..2184406
2049 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1259	 48.26	0	1290696..1291211	-	171	15794306	-	NMA1391	-	periplasmic protein
1260	 51.01	0	1293624..1294019	-	131	15794307	-	NMA1394	-	hypothetical protein
1261	 55.28	0	1294192..1295499	+	435	15794308	hom	NMA1395	-	homoserine dehydrogenase
1262	 50.80	0	1295492..1295926	+	144	15794309	-	NMA1396	-	membrane protein
1263	 52.96	0	1295985..1296254	-	89	15794310	hupB	NMA1397	-	DNA-binding protein
1264	 53.35	0	1296436..1298898	-	820	15794311	lon	NMA1398	-	ATP-dependent protease
1265	 56.02	0	1299257..1300252	+	331	15794312	-	NMA1400	-	hypothetical protein
1266	 57.16	0	1300324..1302069	-	581	15794313	recD	NMA1401	-	exodeoxyribonuclease V alpha subunit
1267	 57.33	0	1302137..1302832	-	231	15794314	-	NMA1402	-	ABC-transporter ATP-binding protein
1268	 54.89	0	1302825..1304072	-	415	15794315	-	NMA1403	-	integral membrane protein
1269	 57.94	0	1304144..1304269	+	41	15794316	-	NMA1404	-	hypothetical protein
1270	 56.27	0	1304278..1304556	+	92	15794317	-	NMA1405	-	periplasmic protein
1271	 54.53	0	1304612..1305229	-	205	15794318	recR	NMA1406	-	recombination protein
1272	 52.57	0	1305296..1306834	-	512	15794319	-	NMA1407	-	peptidyl-prolyl cis-trans isomerase
1273	 53.07	0	1306888..1307262	-	124	15794320	-	NMA1408	-	hypothetical protein
1274	 52.42	0	1307412..1309040	+	542	15794321	-	NMA1409	-	ABC-transporter ATP-binding protein
1275	 57.58	0	1309112..1310365	+	417	15794322	cca	NMA1410	-	multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase
1276	 53.40	0	1310588..1310896	+	102	15794323	-	NMA1411	-	hypothetical protein
1277	 59.79	+1	1310978..1312009	+	343	15794324	ruvB	NMA1412	-	Holliday junction DNA helicase B
1278	 52.67	0	1312032..1312760	-	242	15794325	rpe	NMA1413	-	ribulose-phosphate 3-epimerase
1279	 53.10	0	1313071..1313505	+	144	15794326	-	NMA1414	-	periplasmic protein
1280	 53.94	0	1313518..1314381	-	287	15794327	-	NMA1415	-	hypothetical protein
1281	 53.24	0	1314389..1315006	-	205	161353793	ribC	NMA1416	-	riboflavin synthase subunit alpha
1282	 52.68	0	1315169..1315747	-	192	15794329	-	NMA1417	-	molybdopterin-guanine dinucleotide biosynthesis protein A
1283	 50.71	0	1315989..1317761	+	590	15794330	-	NMA1418	-	two-component system sensor kinase
1284	 54.79	0	1317758..1318414	+	218	15794331	-	NMA1419	-	two-component system response regulator
1285	 35.66	-2	1318573..1318701	-	42	15794332	-	NMA1420	-	hypothetical protein
1286	 51.01	0	1318885..1319919	-	344	15794333	purM	NMA1421	-	phosphoribosylaminoimidazole synthetase
1287	 48.68	0	1320160..1320348	+	62	15794334	-	NMA1423	-	hypothetical protein
1288	 54.22	0	1320677..1321351	+	224	15794335	-	NMA1424	-	hypothetical protein
1289	 55.39	0	1321344..1321937	+	197	15794336	ribA	NMA1425	-	GTP cyclohydrolase II
1290	 50.00	0	1321945..1322064	+	39	15794337	-	NMA1426	-	hypothetical protein
1291	 58.24	0	1323578..1324669	+	363	15794338	ribB	NMA1429	-	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein
1292	 56.98	0	1326807..1328117	-	436	15794339	-	NMA1433	-	recombination factor protein RarA
1293	 34.57	-2	1328366..1328851	+	161	15794340	-	NMA1435	-	hypothetical protein
1294	 43.72	-1	1328851..1329630	+	259	15794341	-	NMA1436	-	hypothetical protein
1295	 54.97	0	1329902..1330816	-	304	15794342	-	NMA1437	-	LysR family transcriptional regulator
1296	 52.18	0	1331072..1332541	+	489	15794343	-	NMA1438	-	integral membrane protein
1297	 56.99	0	1332793..1333164	+	123	15794344	-	NMA1439	-	lipoprotein
1298	 53.97	0	1333237..1334646	+	469	15794345	thrC	NMA1440	-	threonine synthase
1299	 56.35	0	1334693..1335487	+	264	15794346	-	NMA1441	-	hypothetical protein
1300	 51.48	0	1335675..1336451	+	258	15794347	fpr	NMA1442	-	ferredoxin--NADP reductase
1301	 30.25	-2	1336758..1336919	+	53	15794348	-	NMA1443	-	hypothetical protein
1302	 58.78	0	1337108..1339579	-	823	15794349	-	NMA1444	-	P-type cation-transporting ATPase
1303	 57.75	0	1339576..1340685	-	369	15794350	-	NMA1445	-	hypothetical protein
1304	 56.83	0	1340759..1342039	-	426	15794351	-	NMA1446	-	periplasmic protein
1305	 52.20	0	1342192..1342917	-	241	15794352	-	NMA1447	-	hypothetical protein
1306	 56.64	0	1342990..1343667	-	225	15794353	radC	NMA1448	-	DNA repair protein RadC
1307	 52.89	0	1343790..1345139	-	449	15794354	gshA	NMA1449	-	glutamate--cysteine ligase
1308	 56.95	0	1345395..1346804	+	469	15794355	leuC	NMA1450	-	isopropylmalate isomerase large subunit
1309	 58.43	0	1346901..1347155	+	84	15794356	-	NMA1451	-	lipoprotein
1310	 53.12	0	1347217..1347858	+	213	15794357	leuD	NMA1452	-	isopropylmalate isomerase small subunit
1311	 40.33	-1	1348033..1349304	+	423	15794358	-	NMA1453	-	DNA modification methylase
1312	 53.59	0	1350085..1351155	+	356	15794359	leuB	NMA1456	-	3-isopropylmalate dehydrogenase
1313	 52.84	0	1351318..1351881	+	187	15794360	-	NMA1457	-	periplasmic protein
1314	 52.58	0	1352342..1353739	+	465	15794361	aspA	NMA1459	-	aspartate ammonia-lyase
1315	 51.94	0	1353811..1354686	-	291	15794362	-	NMA1460	-	integral membrane protein
1316	 54.50	0	1354688..1355410	-	240	15794363	-	NMA1461	-	dnaJ-family protein
1317	 50.42	0	1355589..1356068	-	159	15794364	-	NMA1462	-	hypothetical protein
1318	 60.06	+1	1356143..1356505	+	120	15794365	-	NMA1463	-	hypothetical protein
1319	 54.67	0	1356537..1357403	+	288	15794366	-	NMA1464	-	hypothetical protein
1320	 53.33	0	1357496..1358455	+	319	15794367	-	NMA1465	-	hypothetical protein
1321	 48.30	0	1358548..1361487	-	979	15794368	-	NMA1466	-	type III restriction-modification system endonuclease protein
1322	 43.14	-1	1363469..1363570	-	33	15794369	-	NMA1468	-	hypothetical protein
1323	 52.15	0	1363554..1364111	-	185	15794370	ppiA	NMA1469	-	peptidyl-prolyl cis-trans isomerase A
1324	 53.83	0	1364176..1365102	-	308	15794371	-	NMA1470	-	hypothetical protein
1325	 54.51	0	1365090..1365566	-	158	15794372	-	NMA1471	-	cation uptake regulator
1326	 53.95	0	1365637..1366092	-	151	15794373	-	NMA1472	-	protein-tyrosine-phosphatase
1327	 41.76	-1	1366217..1367332	-	371	15794374	-	NMA1473	-	hypothetical protein
1328	 56.38	0	1367446..1368543	-	365	15794375	-	NMA1474	-	hypothetical protein
1329	 50.06	0	1368626..1370257	-	543	15794376	-	NMA1475	-	hypothetical protein
1330	 53.33	0	1370357..1370641	-	94	15794377	-	NMA1476	-	mercuric ion binding protein
1331	 56.85	0	1371201..1372637	+	478	15794378	-	NMA1478	-	polysaccharide modification protein
1332	 55.39	0	1372648..1373631	+	327	15794379	-	NMA1479	-	periplasmic protein
1333	 61.14	+1	1373628..1374821	+	397	15794380	-	NMA1480	-	periplasmic protein
1334	 51.04	0	1375082..1376047	-	321	15794381	-	NMA1481	-	IS1655 transposase
1335	 54.44	0	1376191..1377744	+	517	15794382	-	NMA1482	-	acyl-CoA synthetase
1336	 51.54	0	1377835..1379817	-	660	15794383	-	NMA1483	-	transmembrane transport protein
1337	 42.22	-1	1379869..1380003	-	44	15794384	-	NMA1484	-	hypothetical protein
1338	 57.15	0	1380151..1382157	+	668	15794385	gcr	NMA1485	-	site-specific recombinase
1339	 51.04	0	1382368..1383333	+	321	15794386	-	NMA1486	-	IS1655 transposase
1340	 46.97	0	1383398..1383991	+	197	15794387	-	NMA1487	-	IS1016 transposase
1341	 54.38	0	1384238..1385230	-	330	15794388	mltB	NMA1488	-	murein hydrolase
1342	 57.94	0	1385256..1385507	-	83	15794389	-	NMA1489	-	hypothetical protein
1343	 55.79	0	1385549..1387102	-	517	15794390	-	NMA1490	-	oxidoreductase
1344	 55.98	0	1387161..1391051	+	1296	15794391	mfd	NMA1491	-	transcription-repair coupling factor
1345	 52.60	0	1391200..1391583	+	127	15794392	panD	NMA1492	-	aspartate alpha-decarboxylase
1346	 51.60	0	1391605..1392447	+	280	15794393	kdsA	NMA1493	-	2-dehydro-3-deoxyphosphooctonate aldolase
1347	 53.97	0	1392462..1392902	+	146	15794394	-	NMA1494	-	hypothetical protein
1348	 54.93	0	1392950..1394236	+	428	15794395	eno	NMA1495	-	phosphopyruvate hydratase
1349	 48.39	0	1394250..1394528	+	92	15794396	-	NMA1496	-	hypothetical protein
1350	 54.64	0	1394569..1394859	-	96	15794397	-	NMA1497	-	iron-sulphur binding protein
1351	 47.80	0	1395057..1396190	-	377	15794398	nrdB	NMA1498	-	ribonucleotide-diphosphate reductase subunit beta
1352	 31.65	-2	1396251..1397438	-	395	15794399	-	NMA1499	-	type-II restriction endonuclease
1353	 32.94	-2	1397431..1398444	-	337	15794400	-	NMA1500	-	modification methylase
1354	 52.72	0	1398502..1400781	-	759	15794401	nrdA	NMA1501	-	ribonucleotide-diphosphate reductase subunit alpha
1355	 54.17	0	1401310..1401621	+	103	15794402	-	NMA1503	-	hypothetical protein
1356	 55.21	0	1401933..1402700	-	255	15794403	plsC	NMA1504	-	1-acyl-SN-glycerol-3-phosphate acyltransferase
1357	 54.71	0	1402788..1403615	-	275	15794404	fpg	NMA1505	-	formamidopyrimidine-DNA glycosylase
1358	 55.26	0	1403667..1404332	-	221	15794405	-	NMA1506	-	hypothetical protein
51.77	MEAN

7.09	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.