IslandPath Analysis: Neisseria gonorrhoeae FA 1090



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.66   STD DEV: 6.57
Neisseria gonorrhoeae FA 1090, complete genome - 1..2153922
2002 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
942	 53.33	0	1003573..1003917	-	114	59801415	-	NGO1043	-	hypothetical protein
943	 54.76	0	1004234..1004779	-	181	59801416	-	NGO1044	-	hypothetical protein
944	 54.60	0	1004860..1005870	-	336	59801417	-	NGO1045	-	tryptophanyl-tRNA synthetase
945	 52.95	0	1006130..1008709	+	859	59801418	-	NGO1046	-	putative ClpB protein
946	 52.43	0	1008781..1009995	-	404	59801419	-	NGO1047	-	aminotransferase AlaT
947	 52.38	0	1010084..1010293	-	69	59801420	-	NGO1048	-	hypothetical protein
948	 53.41	0	1010485..1011291	+	268	59801421	-	NGO1049	-	hypothetical protein
949	 37.92	-2	1012691..1012930	+	79	59801422	-	NGO1051	-	hypothetical protein
950	 57.24	0	1012965..1013675	+	236	59801423	-	NGO1052	-	phosphoglycolate phosphatase
951	 53.03	0	1013748..1014209	+	153	59801424	recX	NGO1053	-	recombination regulator RecX
952	 55.56	0	1014283..1014444	+	53	59801425	-	NGO1054	-	hypothetical protein
953	 55.69	0	1014597..1015079	+	160	59801426	-	NGO1055	-	putative acyl-CoA hydrolase
954	 56.44	0	1015477..1016688	-	403	59801427	-	NGO1056	-	hypothetical protein
955	 56.22	0	1016592..1017338	-	248	59801428	-	NGO1058	-	hypothetical protein
956	 55.43	0	1017355..1018911	-	518	59801429	-	NGO1059	-	hypothetical protein
957	 53.69	0	1019279..1020064	-	261	59801430	-	NGO1060	-	FimB
958	 55.93	0	1020175..1021608	-	477	59801431	-	NGO1061	-	putative succinate semialdehyde dehydrogenase
959	 52.83	0	1022009..1022803	+	264	59801432	-	NGO1062	-	hypothetical protein
960	 58.79	0	1022564..1022944	-	126	59801433	-	NGO1063	-	hypothetical protein
961	 55.48	0	1023468..1025549	+	693	59801434	-	NGO1064	-	hypothetical protein
962	 52.31	0	1025539..1025733	+	64	59801435	-	NGO1065	-	hypothetical protein
963	 41.90	-1	1025841..1026155	+	104	59801436	-	NGO1066	-	MafI protein
964	 48.49	0	1026289..1027251	+	320	59801437	-	NGO1067	-	MafA adhesin protein
965	 45.42	-1	1027291..1028697	+	468	59801438	-	NGO1068	-	MafB2
966	 27.06	-2	1028713..1029015	+	100	59801439	-	NGO1069	-	hypothetical protein
967	 25.47	-2	1029707..1030024	+	105	59801440	-	NGO1070	-	hypothetical protein
968	 37.54	-2	1030403..1030687	+	94	59801441	-	NGO1072	-	hypothetical protein
969	 24.69	-2	1030690..1031013	+	107	59801442	-	NGO1073	-	hypothetical protein
970	 41.09	-1	1031165..1031512	+	115	59801443	-	NGO1074	-	MafI protein 2
971	 55.46	0	1035986..1036333	-	115	59801444	-	NGO1077	-	hypothetical protein
972	 57.05	0	1036789..1037235	+	148	59801445	-	NGO1078	-	putative acyl-CoA hydrolase
973	 53.41	0	1037286..1038107	-	273	59801446	-	NGO1079	-	putative oxidoreductase
974	 56.86	0	1038226..1038684	+	152	59801447	-	NGO1080	-	putative C-type cytochrome
975	 47.67	0	1038827..1039963	-	378	59801448	-	NGO1081	-	alpha-2,3-sialyltransferase
976	 55.30	0	1040336..1042561	+	741	59801449	-	NGO1082	-	putative isocitrate dehydrogenase
977	 49.53	0	1042858..1043178	+	106	59801450	-	NGO1083	-	hypothetical protein
978	 32.74	-2	1044120..1044287	+	55	59801451	-	NGO1084	-	hypothetical protein
979	 55.32	0	1044447..1045292	+	281	59801452	-	NGO1085	-	putative phage associated protein
980	 52.24	0	1045279..1045479	-	66	59801453	-	NGO1086	-	putative phage associated protein
981	 60.50	+1	1045494..1046174	+	226	59801454	-	NGO1087	-	putative phage associated protein
982	 58.85	0	1046153..1046638	-	161	59801455	-	NGO1088	-	putative phage associated protein
983	 56.96	0	1046644..1047117	-	157	59801456	-	NGO1089	-	putative phage associated protein
984	 59.34	+1	1047173..1048468	-	431	59801457	-	NGO1090	-	putative phage associated protein
985	 59.65	+1	1048489..1048887	-	132	59801458	-	NGO1091	-	putative phage associated protein
986	 61.71	+1	1049094..1055027	-	1977	59801459	-	NGO1092	-	putative phage associated protein
987	 65.33	+1	1055027..1056445	-	472	59801460	-	NGO1093	-	putative phage associated protein
988	 61.82	+1	1056442..1057638	-	398	59801461	-	NGO1094	-	putative phage associated protein
989	 52.32	0	1057849..1058322	-	157	59801462	-	NGO1095	-	putative phage associated protein
990	 49.54	0	1058422..1058637	-	71	59801463	-	NGO1096	-	putative phage associated protein
991	 59.96	+1	1058674..1060926	-	750	59801464	-	NGO1097	-	putative phage associated protein
992	 54.90	0	1060926..1062200	-	424	59801465	-	NGO1098	-	putative phage associated protein
993	 53.09	0	1062181..1062423	-	80	59801466	-	NGO1099	-	putative phage associated protein
994	 54.73	0	1062478..1062720	-	80	59801467	-	NGO1100	-	putative phage associated protein
995	 52.06	0	1062720..1063034	-	104	59801468	-	NGO1101	-	putative phage associated protein
996	 33.53	-2	1063207..1063725	-	172	59801469	-	NGO1102	-	putative phage associated protein
997	 41.15	-1	1063716..1064099	-	127	59801470	-	NGO1103	-	putative phage associated protein
998	 62.42	+1	1064096..1064401	-	101	59801471	-	NGO1104	-	putative phage associated protein
999	 63.61	+1	1064373..1064993	+	206	59801472	-	NGO1105	-	putative phage associated protein
1000	 60.67	+1	1065119..1065268	-	49	59801473	-	NGO1106	-	putative phage associated protein
1001	 57.45	0	1065246..1065614	+	122	59801474	-	NGO1107	-	putative phage associated protein
1002	 59.39	+1	1065652..1066146	-	164	59801475	-	NGO1108	-	putative phage associated protein
1003	 58.95	0	1066185..1066469	-	94	59801476	-	NGO1109	-	putative phage associated protein
1004	 54.48	0	1066486..1067847	-	453	59801477	-	NGO1110	-	putative replicative DNA helicase, putative phage associated protein
1005	 52.08	0	1067844..1068974	-	376	59801478	-	NGO1111	-	putative phage associated protein
1006	 46.05	-1	1069092..1069319	-	75	59801479	-	NGO1112	-	putative phage associated protein
1007	 49.21	0	1069492..1069680	+	62	59801480	-	NGO1113	-	putative phage associated protein
1008	 49.36	0	1069657..1069812	-	51	59801481	-	NGO1114	-	putative phage associated protein
1009	 38.10	-2	1069893..1070081	-	62	59801482	-	NGO1115	-	putative phage associated protein
1010	 55.71	0	1070260..1070907	+	215	59801483	-	NGO1116	-	putative phage repressor protein, putative phage associated protein
1011	 52.04	0	1071067..1071606	+	179	59801484	-	NGO1117	-	putative phage associated protein
1012	 48.61	0	1071607..1071966	+	119	59801485	-	NGO1118	-	putative phage associated protein
1013	 58.45	0	1071983..1072201	-	72	59801486	-	NGO1119	-	putative phage associated protein
1014	 42.79	-1	1072684..1072884	+	66	59801487	-	NGO1120	-	putative phage associated protein
1015	 50.94	0	1072917..1073393	+	158	59801488	-	NGO1121	-	putative phage associated protein
1016	 65.22	+1	1073390..1073665	+	91	59801489	-	NGO1122	-	putative phage associated protein
1017	 55.86	0	1073806..1074138	+	110	59801490	-	NGO1123	-	putative phage associated protein
1018	 59.77	+1	1074307..1074567	+	86	59801491	-	NGO1124	-	putative phage associated protein
1019	 51.85	0	1074564..1074725	+	53	59801492	-	NGO1125	-	putative phage associated protein
1020	 55.60	0	1074794..1075480	+	228	59801493	-	NGO1126	-	putative phage associated protein
1021	 56.28	0	1075620..1075802	+	60	59801494	-	NGO1127	-	putative phage associated protein
1022	 52.44	0	1075799..1076290	+	163	59801495	-	NGO1128	-	putative phage associated protein
1023	 32.87	-2	1076342..1076557	+	71	59801496	-	NGO1129	-	putative phage associated protein
1024	 57.62	0	1076668..1077651	+	327	59801497	-	NGO1130	-	putative phage associated protein
1025	 60.39	+1	1077648..1078061	+	137	59801498	-	NGO1131	-	putative phage associated protein
1026	 46.67	0	1078087..1078281	+	64	59801499	-	NGO1132	-	putative phage associated protein
1027	 54.22	0	1078572..1079246	+	224	59801500	-	NGO1133	-	hypothetical protein
1028	 54.21	0	1079239..1079832	+	197	59801501	-	NGO1134	-	putative GTP cyclohydrolase II
1029	 45.51	-1	1079913..1080224	-	103	59801502	-	NGO1135	-	hypothetical protein
1030	 44.76	-1	1079991..1080200	+	69	59801503	-	NGO1136	-	hypothetical protein
1031	 46.42	0	1080185..1081147	+	320	59801504	-	NGO1137	-	Irg2
1032	 49.45	0	1082262..1083347	-	361	59801505	-	NGO1138	-	putative phage associated protein
1033	 46.46	0	1083352..1083648	-	98	59801506	-	NGO1139	-	putative phage associated protein
1034	 50.20	0	1083649..1085172	-	507	59801507	-	NGO1140	-	TspB1
1035	 34.53	-2	1085156..1085488	-	110	59801508	-	NGO1141	-	putative phage associated protein
1036	 47.31	0	1085601..1085879	-	92	59801509	-	NGO1142	-	putative phage associated protein
1037	 51.14	0	1085886..1086104	-	72	59801510	-	NGO1143	-	putative phage associated protein
1038	 38.73	-2	1086190..1086393	-	67	59801511	-	NGO1144	-	putative phage associated protein
1039	 44.55	-1	1086407..1086718	-	103	59801512	-	NGO1145	-	putative phage associated protein
1040	 45.44	-1	1086789..1088060	-	423	59801513	-	NGO1146	-	putative phage associated protein
1041	 37.78	-2	1088047..1088271	-	74	59801514	-	NGO1147	-	hypothetical protein
52.66	MEAN

6.57	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.