IslandPath Analysis: Neisseria gonorrhoeae FA 1090



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.66   STD DEV: 6.57
Neisseria gonorrhoeae FA 1090, complete genome - 1..2153922
2002 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
905	 54.89	0	964627..965178	-	183	59801378	-	NGO0994	-	Laz
906	 56.03	0	965461..965883	-	140	59801379	-	NGO0995	-	hypothetical protein
907	 55.62	0	966015..968765	+	916	59801380	-	NGO0996	-	preprotein translocase subunit SecA
908	 53.13	0	968910..970682	+	590	59801381	dnaG	NGO0998	-	DNA primase
909	 51.58	0	970869..972797	+	642	59801382	-	NGO0999	-	RNA polymerase sigma factor RpoD
910	 53.07	0	972837..973064	-	75	59801383	-	NGO1000	-	putative phage associated protein
911	 54.53	0	973188..973673	-	161	59801384	-	NGO1001	-	putative phage associated protein
912	 34.69	-2	973680..974048	-	122	59801385	-	NGO1002	-	putative phage associated protein
913	 53.22	0	974075..974617	-	180	59801386	-	NGO1003	-	putative phage associated protein
914	 51.11	0	974783..975142	-	119	59801387	-	NGO1004	-	putative phage associated protein
915	 50.29	0	975275..976141	-	288	59801388	-	NGO1005	-	putative phage associated protein
916	 57.26	0	976191..976541	-	116	59801389	-	NGO1006	-	putative phage associated protein
917	 53.33	0	976976..977185	-	69	59801390	-	NGO1007	-	putative phage associated protein
918	 57.39	0	977178..977468	-	96	59801391	-	NGO1008	-	putative phage associated protein
919	 53.12	0	977473..977760	-	95	59801392	-	NGO1009	-	putative phage associated protein
920	 35.40	-2	977880..978314	-	144	59801393	-	NGO1010	-	putative phage associated protein
921	 38.13	-2	978515..978889	-	124	59801394	-	NGO1011	-	putative phage associated protein
922	 38.79	-2	978886..979764	-	292	59801395	-	NGO1012	-	putative phage associated protein
923	 46.46	0	980160..980540	-	126	59801396	-	NGO1013	-	putative phage repressor, putative phage associated protein
924	 50.00	0	980749..981042	+	97	59801397	-	NGO1014	-	putative phage associated protein
925	 51.55	0	981023..981313	+	96	59801398	-	NGO1015	-	putative phage associated protein
926	 55.93	0	982212..984008	+	598	59801399	-	NGO1020	-	putative phage associated protein
927	 51.70	0	986456..987631	+	391	59801400	-	NGO1024	-	hypothetical protein
928	 55.19	0	987973..988521	-	182	59801401	-	NGO1025	-	hypothetical protein
929	 53.64	0	988524..990020	-	498	59801402	-	NGO1026	-	putative ferredoxin
930	 52.24	0	990282..990482	-	66	59801403	-	NGO1027	-	hypothetical protein
931	 55.81	0	990554..992533	+	659	59801404	-	NGO1028	-	transketolase
932	 58.03	0	992677..994065	+	462	59801405	fumC	NGO1029	-	fumarate hydratase
933	 55.95	0	994130..995053	-	307	59801406	-	NGO1030	-	hypothetical protein
934	 59.62	+1	995426..995950	-	174	59801407	-	NGO1031	-	putative single-stranded DNA binding protein
935	 57.34	0	995954..997336	-	460	59801408	-	NGO1032	-	hypothetical protein
936	 60.10	+1	997448..998071	-	207	59801409	-	NGO1033	-	putative transglycosylase
937	 52.46	0	998126..998470	+	114	59801410	-	NGO1034	-	hypothetical protein
938	 50.78	0	999363..999746	-	127	59801411	-	NGO1037	-	hypothetical protein
939	 57.06	0	1000964..1001692	+	242	59801412	-	NGO1040	-	hypothetical protein
940	 55.14	0	1001855..1003363	+	502	59801413	-	NGO1041	-	putative exopolyphosphatase
941	 54.43	0	1003525..1003908	+	127	59801414	-	NGO1042	-	hypothetical protein
942	 53.33	0	1003573..1003917	-	114	59801415	-	NGO1043	-	hypothetical protein
943	 54.76	0	1004234..1004779	-	181	59801416	-	NGO1044	-	hypothetical protein
944	 54.60	0	1004860..1005870	-	336	59801417	-	NGO1045	-	tryptophanyl-tRNA synthetase
945	 52.95	0	1006130..1008709	+	859	59801418	-	NGO1046	-	putative ClpB protein
946	 52.43	0	1008781..1009995	-	404	59801419	-	NGO1047	-	aminotransferase AlaT
947	 52.38	0	1010084..1010293	-	69	59801420	-	NGO1048	-	hypothetical protein
948	 53.41	0	1010485..1011291	+	268	59801421	-	NGO1049	-	hypothetical protein
949	 37.92	-2	1012691..1012930	+	79	59801422	-	NGO1051	-	hypothetical protein
950	 57.24	0	1012965..1013675	+	236	59801423	-	NGO1052	-	phosphoglycolate phosphatase
951	 53.03	0	1013748..1014209	+	153	59801424	recX	NGO1053	-	recombination regulator RecX
952	 55.56	0	1014283..1014444	+	53	59801425	-	NGO1054	-	hypothetical protein
953	 55.69	0	1014597..1015079	+	160	59801426	-	NGO1055	-	putative acyl-CoA hydrolase
954	 56.44	0	1015477..1016688	-	403	59801427	-	NGO1056	-	hypothetical protein
955	 56.22	0	1016592..1017338	-	248	59801428	-	NGO1058	-	hypothetical protein
956	 55.43	0	1017355..1018911	-	518	59801429	-	NGO1059	-	hypothetical protein
957	 53.69	0	1019279..1020064	-	261	59801430	-	NGO1060	-	FimB
958	 55.93	0	1020175..1021608	-	477	59801431	-	NGO1061	-	putative succinate semialdehyde dehydrogenase
959	 52.83	0	1022009..1022803	+	264	59801432	-	NGO1062	-	hypothetical protein
960	 58.79	0	1022564..1022944	-	126	59801433	-	NGO1063	-	hypothetical protein
961	 55.48	0	1023468..1025549	+	693	59801434	-	NGO1064	-	hypothetical protein
962	 52.31	0	1025539..1025733	+	64	59801435	-	NGO1065	-	hypothetical protein
963	 41.90	-1	1025841..1026155	+	104	59801436	-	NGO1066	-	MafI protein
964	 48.49	0	1026289..1027251	+	320	59801437	-	NGO1067	-	MafA adhesin protein
965	 45.42	-1	1027291..1028697	+	468	59801438	-	NGO1068	-	MafB2
966	 27.06	-2	1028713..1029015	+	100	59801439	-	NGO1069	-	hypothetical protein
967	 25.47	-2	1029707..1030024	+	105	59801440	-	NGO1070	-	hypothetical protein
968	 37.54	-2	1030403..1030687	+	94	59801441	-	NGO1072	-	hypothetical protein
969	 24.69	-2	1030690..1031013	+	107	59801442	-	NGO1073	-	hypothetical protein
970	 41.09	-1	1031165..1031512	+	115	59801443	-	NGO1074	-	MafI protein 2
971	 55.46	0	1035986..1036333	-	115	59801444	-	NGO1077	-	hypothetical protein
972	 57.05	0	1036789..1037235	+	148	59801445	-	NGO1078	-	putative acyl-CoA hydrolase
973	 53.41	0	1037286..1038107	-	273	59801446	-	NGO1079	-	putative oxidoreductase
974	 56.86	0	1038226..1038684	+	152	59801447	-	NGO1080	-	putative C-type cytochrome
975	 47.67	0	1038827..1039963	-	378	59801448	-	NGO1081	-	alpha-2,3-sialyltransferase
976	 55.30	0	1040336..1042561	+	741	59801449	-	NGO1082	-	putative isocitrate dehydrogenase
977	 49.53	0	1042858..1043178	+	106	59801450	-	NGO1083	-	hypothetical protein
978	 32.74	-2	1044120..1044287	+	55	59801451	-	NGO1084	-	hypothetical protein
979	 55.32	0	1044447..1045292	+	281	59801452	-	NGO1085	-	putative phage associated protein
980	 52.24	0	1045279..1045479	-	66	59801453	-	NGO1086	-	putative phage associated protein
981	 60.50	+1	1045494..1046174	+	226	59801454	-	NGO1087	-	putative phage associated protein
982	 58.85	0	1046153..1046638	-	161	59801455	-	NGO1088	-	putative phage associated protein
983	 56.96	0	1046644..1047117	-	157	59801456	-	NGO1089	-	putative phage associated protein
984	 59.34	+1	1047173..1048468	-	431	59801457	-	NGO1090	-	putative phage associated protein
985	 59.65	+1	1048489..1048887	-	132	59801458	-	NGO1091	-	putative phage associated protein
986	 61.71	+1	1049094..1055027	-	1977	59801459	-	NGO1092	-	putative phage associated protein
987	 65.33	+1	1055027..1056445	-	472	59801460	-	NGO1093	-	putative phage associated protein
988	 61.82	+1	1056442..1057638	-	398	59801461	-	NGO1094	-	putative phage associated protein
989	 52.32	0	1057849..1058322	-	157	59801462	-	NGO1095	-	putative phage associated protein
990	 49.54	0	1058422..1058637	-	71	59801463	-	NGO1096	-	putative phage associated protein
991	 59.96	+1	1058674..1060926	-	750	59801464	-	NGO1097	-	putative phage associated protein
992	 54.90	0	1060926..1062200	-	424	59801465	-	NGO1098	-	putative phage associated protein
993	 53.09	0	1062181..1062423	-	80	59801466	-	NGO1099	-	putative phage associated protein
994	 54.73	0	1062478..1062720	-	80	59801467	-	NGO1100	-	putative phage associated protein
995	 52.06	0	1062720..1063034	-	104	59801468	-	NGO1101	-	putative phage associated protein
996	 33.53	-2	1063207..1063725	-	172	59801469	-	NGO1102	-	putative phage associated protein
997	 41.15	-1	1063716..1064099	-	127	59801470	-	NGO1103	-	putative phage associated protein
998	 62.42	+1	1064096..1064401	-	101	59801471	-	NGO1104	-	putative phage associated protein
999	 63.61	+1	1064373..1064993	+	206	59801472	-	NGO1105	-	putative phage associated protein
1000	 60.67	+1	1065119..1065268	-	49	59801473	-	NGO1106	-	putative phage associated protein
1001	 57.45	0	1065246..1065614	+	122	59801474	-	NGO1107	-	putative phage associated protein
1002	 59.39	+1	1065652..1066146	-	164	59801475	-	NGO1108	-	putative phage associated protein
1003	 58.95	0	1066185..1066469	-	94	59801476	-	NGO1109	-	putative phage associated protein
1004	 54.48	0	1066486..1067847	-	453	59801477	-	NGO1110	-	putative replicative DNA helicase, putative phage associated protein
52.66	MEAN

6.57	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.