IslandPath Analysis: Neisseria gonorrhoeae FA 1090



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.66   STD DEV: 6.57
Neisseria gonorrhoeae FA 1090, complete genome - 1..2153922
2002 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
875	 58.49	0	932157..932621	-	154	59801348	-	NGO0959	-	hypothetical protein
876	 56.89	0	932839..933615	+	258	59801349	-	NGO0960	-	hypothetical protein
877	 55.91	0	933860..934714	+	284	59801350	-	NGO0961	-	hypothetical protein
878	 57.14	0	934704..935963	+	419	59801351	-	NGO0962	-	nicotinate phosphoribosyltransferase
879	 56.89	0	936055..937773	+	572	59801352	argS	NGO0963	-	arginyl-tRNA synthetase
880	 47.13	0	939735..939995	+	86	59801353	-	NGO0967	-	hypothetical protein
881	 55.42	0	940182..940928	-	248	59801354	-	NGO0968	-	putative ABC transporter, permease protein, amino acid
882	 56.55	0	941107..941808	-	233	59801355	-	NGO0969	-	hypothetical protein
883	 53.87	0	941847..942518	-	223	59801356	-	NGO0970	-	ribose-5-phosphate isomerase A
884	 56.11	0	942595..943077	-	160	59801357	ispF	NGO0971	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
885	 57.25	0	943109..943798	-	229	59801358	-	NGO0972	-	hypothetical protein
886	 57.82	0	943795..944529	-	244	59801359	-	NGO0973	-	putative DNA polymerase III, epsilon chain
887	 53.55	0	944685..945995	-	436	59801360	-	NGO0974	-	hypothetical protein
888	 43.55	-1	945985..946170	-	61	59801361	-	NGO0975	-	FixS
889	 49.33	0	946170..946469	-	99	59801362	-	NGO0976	-	hypothetical protein
890	 57.54	0	946790..948016	+	408	59801363	-	NGO0977	-	putative acetate kinase
891	 55.75	0	948529..950370	-	613	59801364	dipZ	NGO0978	-	thiol:disulfide interchange protein precursor
892	 58.17	0	950461..950931	+	156	59801365	-	NGO0979	-	hypothetical protein
893	 54.83	0	951004..951831	-	275	59801366	-	NGO0980	-	putative transferase
894	 53.21	0	951903..952385	-	160	59801367	-	NGO0981	-	putative peptidyl-prolyl cis-trans isomerase
895	 36.84	-2	952514..952798	+	94	59801368	-	NGO0982	-	hypothetical protein
896	 61.05	+1	952858..953124	+	88	59801369	-	NGO0983	-	Lip
897	 52.63	0	953234..954601	+	455	59801370	-	NGO0984	-	hypothetical protein
898	 44.81	-1	957331..957783	-	150	59801371	smpB	NGO0986	-	SsrA-binding protein
899	 53.81	0	957832..958842	-	336	59801372	-	NGO0987	-	ADP-heptose--LPS heptosyltransferase II
900	 55.29	0	959239..960108	-	289	59801373	-	NGO0988	-	putative methylated-DNA-protein-cysteine methyltransferase
901	 61.46	+1	960876..961739	-	287	59801374	-	NGO0990	-	AraC family transcriptional regulator
902	 55.50	0	962111..963256	-	381	59801375	-	NGO0991	-	succinyl-diaminopimelate desuccinylase
903	 52.66	0	963369..963989	-	206	59801376	-	NGO0992	-	hypothetical protein
904	 52.75	0	964023..964532	-	169	59801377	-	NGO0993	-	hypothetical protein
905	 54.89	0	964627..965178	-	183	59801378	-	NGO0994	-	Laz
906	 56.03	0	965461..965883	-	140	59801379	-	NGO0995	-	hypothetical protein
907	 55.62	0	966015..968765	+	916	59801380	-	NGO0996	-	preprotein translocase subunit SecA
908	 53.13	0	968910..970682	+	590	59801381	dnaG	NGO0998	-	DNA primase
909	 51.58	0	970869..972797	+	642	59801382	-	NGO0999	-	RNA polymerase sigma factor RpoD
910	 53.07	0	972837..973064	-	75	59801383	-	NGO1000	-	putative phage associated protein
911	 54.53	0	973188..973673	-	161	59801384	-	NGO1001	-	putative phage associated protein
912	 34.69	-2	973680..974048	-	122	59801385	-	NGO1002	-	putative phage associated protein
913	 53.22	0	974075..974617	-	180	59801386	-	NGO1003	-	putative phage associated protein
914	 51.11	0	974783..975142	-	119	59801387	-	NGO1004	-	putative phage associated protein
915	 50.29	0	975275..976141	-	288	59801388	-	NGO1005	-	putative phage associated protein
916	 57.26	0	976191..976541	-	116	59801389	-	NGO1006	-	putative phage associated protein
917	 53.33	0	976976..977185	-	69	59801390	-	NGO1007	-	putative phage associated protein
918	 57.39	0	977178..977468	-	96	59801391	-	NGO1008	-	putative phage associated protein
919	 53.12	0	977473..977760	-	95	59801392	-	NGO1009	-	putative phage associated protein
920	 35.40	-2	977880..978314	-	144	59801393	-	NGO1010	-	putative phage associated protein
921	 38.13	-2	978515..978889	-	124	59801394	-	NGO1011	-	putative phage associated protein
922	 38.79	-2	978886..979764	-	292	59801395	-	NGO1012	-	putative phage associated protein
923	 46.46	0	980160..980540	-	126	59801396	-	NGO1013	-	putative phage repressor, putative phage associated protein
924	 50.00	0	980749..981042	+	97	59801397	-	NGO1014	-	putative phage associated protein
925	 51.55	0	981023..981313	+	96	59801398	-	NGO1015	-	putative phage associated protein
926	 55.93	0	982212..984008	+	598	59801399	-	NGO1020	-	putative phage associated protein
927	 51.70	0	986456..987631	+	391	59801400	-	NGO1024	-	hypothetical protein
928	 55.19	0	987973..988521	-	182	59801401	-	NGO1025	-	hypothetical protein
929	 53.64	0	988524..990020	-	498	59801402	-	NGO1026	-	putative ferredoxin
930	 52.24	0	990282..990482	-	66	59801403	-	NGO1027	-	hypothetical protein
931	 55.81	0	990554..992533	+	659	59801404	-	NGO1028	-	transketolase
932	 58.03	0	992677..994065	+	462	59801405	fumC	NGO1029	-	fumarate hydratase
933	 55.95	0	994130..995053	-	307	59801406	-	NGO1030	-	hypothetical protein
934	 59.62	+1	995426..995950	-	174	59801407	-	NGO1031	-	putative single-stranded DNA binding protein
935	 57.34	0	995954..997336	-	460	59801408	-	NGO1032	-	hypothetical protein
936	 60.10	+1	997448..998071	-	207	59801409	-	NGO1033	-	putative transglycosylase
937	 52.46	0	998126..998470	+	114	59801410	-	NGO1034	-	hypothetical protein
938	 50.78	0	999363..999746	-	127	59801411	-	NGO1037	-	hypothetical protein
939	 57.06	0	1000964..1001692	+	242	59801412	-	NGO1040	-	hypothetical protein
940	 55.14	0	1001855..1003363	+	502	59801413	-	NGO1041	-	putative exopolyphosphatase
941	 54.43	0	1003525..1003908	+	127	59801414	-	NGO1042	-	hypothetical protein
942	 53.33	0	1003573..1003917	-	114	59801415	-	NGO1043	-	hypothetical protein
943	 54.76	0	1004234..1004779	-	181	59801416	-	NGO1044	-	hypothetical protein
944	 54.60	0	1004860..1005870	-	336	59801417	-	NGO1045	-	tryptophanyl-tRNA synthetase
945	 52.95	0	1006130..1008709	+	859	59801418	-	NGO1046	-	putative ClpB protein
946	 52.43	0	1008781..1009995	-	404	59801419	-	NGO1047	-	aminotransferase AlaT
947	 52.38	0	1010084..1010293	-	69	59801420	-	NGO1048	-	hypothetical protein
948	 53.41	0	1010485..1011291	+	268	59801421	-	NGO1049	-	hypothetical protein
949	 37.92	-2	1012691..1012930	+	79	59801422	-	NGO1051	-	hypothetical protein
950	 57.24	0	1012965..1013675	+	236	59801423	-	NGO1052	-	phosphoglycolate phosphatase
951	 53.03	0	1013748..1014209	+	153	59801424	recX	NGO1053	-	recombination regulator RecX
952	 55.56	0	1014283..1014444	+	53	59801425	-	NGO1054	-	hypothetical protein
953	 55.69	0	1014597..1015079	+	160	59801426	-	NGO1055	-	putative acyl-CoA hydrolase
954	 56.44	0	1015477..1016688	-	403	59801427	-	NGO1056	-	hypothetical protein
955	 56.22	0	1016592..1017338	-	248	59801428	-	NGO1058	-	hypothetical protein
956	 55.43	0	1017355..1018911	-	518	59801429	-	NGO1059	-	hypothetical protein
957	 53.69	0	1019279..1020064	-	261	59801430	-	NGO1060	-	FimB
958	 55.93	0	1020175..1021608	-	477	59801431	-	NGO1061	-	putative succinate semialdehyde dehydrogenase
959	 52.83	0	1022009..1022803	+	264	59801432	-	NGO1062	-	hypothetical protein
960	 58.79	0	1022564..1022944	-	126	59801433	-	NGO1063	-	hypothetical protein
961	 55.48	0	1023468..1025549	+	693	59801434	-	NGO1064	-	hypothetical protein
962	 52.31	0	1025539..1025733	+	64	59801435	-	NGO1065	-	hypothetical protein
963	 41.90	-1	1025841..1026155	+	104	59801436	-	NGO1066	-	MafI protein
964	 48.49	0	1026289..1027251	+	320	59801437	-	NGO1067	-	MafA adhesin protein
965	 45.42	-1	1027291..1028697	+	468	59801438	-	NGO1068	-	MafB2
966	 27.06	-2	1028713..1029015	+	100	59801439	-	NGO1069	-	hypothetical protein
967	 25.47	-2	1029707..1030024	+	105	59801440	-	NGO1070	-	hypothetical protein
968	 37.54	-2	1030403..1030687	+	94	59801441	-	NGO1072	-	hypothetical protein
969	 24.69	-2	1030690..1031013	+	107	59801442	-	NGO1073	-	hypothetical protein
970	 41.09	-1	1031165..1031512	+	115	59801443	-	NGO1074	-	MafI protein 2
971	 55.46	0	1035986..1036333	-	115	59801444	-	NGO1077	-	hypothetical protein
972	 57.05	0	1036789..1037235	+	148	59801445	-	NGO1078	-	putative acyl-CoA hydrolase
973	 53.41	0	1037286..1038107	-	273	59801446	-	NGO1079	-	putative oxidoreductase
974	 56.86	0	1038226..1038684	+	152	59801447	-	NGO1080	-	putative C-type cytochrome
52.66	MEAN

6.57	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.