IslandPath Analysis: Neisseria gonorrhoeae FA 1090



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.66   STD DEV: 6.57
Neisseria gonorrhoeae FA 1090, complete genome - 1..2153922
2002 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
834	 48.30	0	888397..889218	-	273	59801307	-	NGO0909	-	putative IS150 ORF B
835	 52.30	0	890632..891522	-	296	59801308	-	NGO0912	-	succinyl-CoA synthetase subunit alpha
836	 51.50	0	891533..892699	-	388	59801309	sucC	NGO0913	-	succinyl-CoA synthetase subunit beta
837	 44.79	-1	892771..893058	-	95	59801310	-	NGO0914	-	hypothetical protein
838	 52.72	0	893178..894611	-	477	59801311	-	NGO0915	-	dihydrolipoamide dehydrogenase
839	 51.61	0	894872..896053	-	393	59801312	-	NGO0916	-	dihydrolipoamide acetyltransferase
840	 51.11	0	896153..898981	-	942	59801313	kgd	NGO0917	-	alpha-ketoglutarate decarboxylase
841	 52.57	0	899186..900469	-	427	59801314	gltA	NGO0918	-	type II citrate synthase
842	 43.37	-1	900581..900829	-	82	59801315	-	NGO0919	-	hypothetical protein
843	 48.97	0	900833..901561	-	242	59801316	sdhB	NGO0920	-	succinate dehydrogenase iron-sulfur subunit
844	 52.32	0	901660..903423	-	587	59801317	-	NGO0921	-	putative succinate dehydrogenase flavoprotein subunit
845	 46.78	0	903426..903767	-	113	59801318	-	NGO0922	-	putative succinate dehydrogenase hydrophobic membrane anchor protein
846	 47.62	0	903761..904138	-	125	59801319	-	NGO0923	-	putative fumarate reductase cytochrome b large subunit
847	 39.05	-2	904199..904408	-	69	59801320	-	NGO0924	-	hypothetical protein
848	 54.20	0	904425..905828	-	467	59801321	-	NGO0925	-	dihydrolipoamide dehydrogenase
849	 47.83	0	906077..906814	-	245	59801322	-	NGO0926	-	putative peroxiredoxin family protein/glutaredoxin
850	 42.42	-1	906917..907081	-	54	59801323	-	NGO0927	-	hypothetical protein
851	 52.35	0	907093..909369	-	758	59801324	-	NGO0928	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
852	 52.79	0	909505..910383	-	292	59801325	metF	NGO0929	-	5,10-methylenetetrahydrofolate reductase
853	 45.65	-1	910582..910857	+	91	59801326	rpmE2	NGO0930	-	50S ribosomal protein L31 type B
854	 53.17	0	910857..910982	+	41	59801327	rpmJ	NGO0931	-	50S ribosomal protein L36
855	 49.66	0	911041..911481	+	146	59801328	-	NGO0932	-	hypothetical protein
856	 52.54	0	911429..912568	+	379	59801329	metX	NGO0933	-	homoserine O-acetyltransferase
857	 52.92	0	912565..913146	+	193	59801330	-	NGO0934	-	hypothetical protein
858	 50.62	0	914253..914813	-	186	59801331	-	NGO0936	-	elongation factor P
859	 55.30	0	914856..916007	-	383	59801332	-	NGO0937	-	hypothetical protein
860	 47.57	0	916026..916334	-	102	59801333	-	NGO0938	-	hypothetical protein
861	 58.01	0	916342..916653	-	103	59801334	-	NGO0939	-	hypothetical protein
862	 58.81	0	916655..917596	+	313	59801335	-	NGO0940	-	putative tRNA delta transferase
863	 58.06	0	917600..918319	+	239	59801336	-	NGO0941	-	putative cytosine deaminase
864	 57.87	0	918324..918812	+	162	59801337	-	NGO0942	-	hypothetical protein
865	 59.47	+1	921445..922320	+	291	59801338	dapA	NGO0947	-	dihydrodipicolinate synthase
866	 57.23	0	922329..923525	+	398	59801339	-	NGO0948	-	hypothetical protein
867	 53.27	0	923582..924514	-	310	59801340	-	NGO0949	-	proline iminopeptidase
868	 47.14	0	924507..924803	-	98	59801341	-	NGO0950	-	hypothetical protein
869	 50.45	0	926135..928903	+	922	59801342	-	NGO0952	-	putative TonB-dependent receptor protein
870	 44.91	-1	928934..929149	+	71	59801343	-	NGO0953	-	hypothetical protein
871	 39.33	-2	929779..929928	-	49	59801344	-	NGO0955	-	hypothetical protein
872	 54.43	0	929928..931145	-	405	59801345	-	NGO0956	-	aspartate kinase
873	 44.24	-1	931182..931346	+	54	59801346	-	NGO0957	-	hypothetical protein
874	 55.14	0	931347..932075	-	242	59801347	-	NGO0958	-	putative ribonuclease PH
875	 58.49	0	932157..932621	-	154	59801348	-	NGO0959	-	hypothetical protein
876	 56.89	0	932839..933615	+	258	59801349	-	NGO0960	-	hypothetical protein
877	 55.91	0	933860..934714	+	284	59801350	-	NGO0961	-	hypothetical protein
878	 57.14	0	934704..935963	+	419	59801351	-	NGO0962	-	nicotinate phosphoribosyltransferase
879	 56.89	0	936055..937773	+	572	59801352	argS	NGO0963	-	arginyl-tRNA synthetase
880	 47.13	0	939735..939995	+	86	59801353	-	NGO0967	-	hypothetical protein
881	 55.42	0	940182..940928	-	248	59801354	-	NGO0968	-	putative ABC transporter, permease protein, amino acid
882	 56.55	0	941107..941808	-	233	59801355	-	NGO0969	-	hypothetical protein
883	 53.87	0	941847..942518	-	223	59801356	-	NGO0970	-	ribose-5-phosphate isomerase A
884	 56.11	0	942595..943077	-	160	59801357	ispF	NGO0971	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
885	 57.25	0	943109..943798	-	229	59801358	-	NGO0972	-	hypothetical protein
886	 57.82	0	943795..944529	-	244	59801359	-	NGO0973	-	putative DNA polymerase III, epsilon chain
887	 53.55	0	944685..945995	-	436	59801360	-	NGO0974	-	hypothetical protein
888	 43.55	-1	945985..946170	-	61	59801361	-	NGO0975	-	FixS
889	 49.33	0	946170..946469	-	99	59801362	-	NGO0976	-	hypothetical protein
890	 57.54	0	946790..948016	+	408	59801363	-	NGO0977	-	putative acetate kinase
891	 55.75	0	948529..950370	-	613	59801364	dipZ	NGO0978	-	thiol:disulfide interchange protein precursor
892	 58.17	0	950461..950931	+	156	59801365	-	NGO0979	-	hypothetical protein
893	 54.83	0	951004..951831	-	275	59801366	-	NGO0980	-	putative transferase
894	 53.21	0	951903..952385	-	160	59801367	-	NGO0981	-	putative peptidyl-prolyl cis-trans isomerase
895	 36.84	-2	952514..952798	+	94	59801368	-	NGO0982	-	hypothetical protein
896	 61.05	+1	952858..953124	+	88	59801369	-	NGO0983	-	Lip
897	 52.63	0	953234..954601	+	455	59801370	-	NGO0984	-	hypothetical protein
898	 44.81	-1	957331..957783	-	150	59801371	smpB	NGO0986	-	SsrA-binding protein
899	 53.81	0	957832..958842	-	336	59801372	-	NGO0987	-	ADP-heptose--LPS heptosyltransferase II
900	 55.29	0	959239..960108	-	289	59801373	-	NGO0988	-	putative methylated-DNA-protein-cysteine methyltransferase
901	 61.46	+1	960876..961739	-	287	59801374	-	NGO0990	-	AraC family transcriptional regulator
902	 55.50	0	962111..963256	-	381	59801375	-	NGO0991	-	succinyl-diaminopimelate desuccinylase
903	 52.66	0	963369..963989	-	206	59801376	-	NGO0992	-	hypothetical protein
904	 52.75	0	964023..964532	-	169	59801377	-	NGO0993	-	hypothetical protein
905	 54.89	0	964627..965178	-	183	59801378	-	NGO0994	-	Laz
906	 56.03	0	965461..965883	-	140	59801379	-	NGO0995	-	hypothetical protein
907	 55.62	0	966015..968765	+	916	59801380	-	NGO0996	-	preprotein translocase subunit SecA
908	 53.13	0	968910..970682	+	590	59801381	dnaG	NGO0998	-	DNA primase
909	 51.58	0	970869..972797	+	642	59801382	-	NGO0999	-	RNA polymerase sigma factor RpoD
910	 53.07	0	972837..973064	-	75	59801383	-	NGO1000	-	putative phage associated protein
911	 54.53	0	973188..973673	-	161	59801384	-	NGO1001	-	putative phage associated protein
912	 34.69	-2	973680..974048	-	122	59801385	-	NGO1002	-	putative phage associated protein
913	 53.22	0	974075..974617	-	180	59801386	-	NGO1003	-	putative phage associated protein
914	 51.11	0	974783..975142	-	119	59801387	-	NGO1004	-	putative phage associated protein
915	 50.29	0	975275..976141	-	288	59801388	-	NGO1005	-	putative phage associated protein
916	 57.26	0	976191..976541	-	116	59801389	-	NGO1006	-	putative phage associated protein
917	 53.33	0	976976..977185	-	69	59801390	-	NGO1007	-	putative phage associated protein
918	 57.39	0	977178..977468	-	96	59801391	-	NGO1008	-	putative phage associated protein
919	 53.12	0	977473..977760	-	95	59801392	-	NGO1009	-	putative phage associated protein
920	 35.40	-2	977880..978314	-	144	59801393	-	NGO1010	-	putative phage associated protein
921	 38.13	-2	978515..978889	-	124	59801394	-	NGO1011	-	putative phage associated protein
922	 38.79	-2	978886..979764	-	292	59801395	-	NGO1012	-	putative phage associated protein
923	 46.46	0	980160..980540	-	126	59801396	-	NGO1013	-	putative phage repressor, putative phage associated protein
924	 50.00	0	980749..981042	+	97	59801397	-	NGO1014	-	putative phage associated protein
925	 51.55	0	981023..981313	+	96	59801398	-	NGO1015	-	putative phage associated protein
926	 55.93	0	982212..984008	+	598	59801399	-	NGO1020	-	putative phage associated protein
927	 51.70	0	986456..987631	+	391	59801400	-	NGO1024	-	hypothetical protein
928	 55.19	0	987973..988521	-	182	59801401	-	NGO1025	-	hypothetical protein
929	 53.64	0	988524..990020	-	498	59801402	-	NGO1026	-	putative ferredoxin
930	 52.24	0	990282..990482	-	66	59801403	-	NGO1027	-	hypothetical protein
931	 55.81	0	990554..992533	+	659	59801404	-	NGO1028	-	transketolase
932	 58.03	0	992677..994065	+	462	59801405	fumC	NGO1029	-	fumarate hydratase
933	 55.95	0	994130..995053	-	307	59801406	-	NGO1030	-	hypothetical protein
52.66	MEAN

6.57	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.