IslandPath Analysis: Neisseria gonorrhoeae FA 1090



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.66   STD DEV: 6.57
Neisseria gonorrhoeae FA 1090, complete genome - 1..2153922
2002 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
785	 31.16	-2	840823..840960	-	45	59801258	-	NGO0854	-	hypothetical protein
786	 52.66	0	841711..842067	-	118	59801259	-	NGO0857	-	putative dihydroneopterin aldolase
787	 55.89	0	842123..842725	+	200	59801260	-	NGO0858	-	hypothetical protein
788	 57.21	0	842817..843662	+	281	59801261	-	NGO0859	-	hypothetical protein
789	 48.58	0	843668..844126	+	152	59801262	-	NGO0860	-	hypothetical protein
790	 46.59	0	844152..844400	-	82	59801263	-	NGO0861	-	hypothetical protein
791	 53.54	0	844641..845615	+	324	59801264	-	NGO0862	-	fructose-1,6-bisphosphatase
792	 47.03	0	845774..845992	-	72	59801265	-	NGO0863	-	hypothetical protein
793	 39.92	-1	848531..848773	+	80	59801266	-	NGO0865	-	hypothetical protein
794	 54.20	0	848840..850090	+	416	59801267	-	NGO0866	-	serine hydroxymethyltransferase
795	 43.08	-1	850163..850552	-	129	59801268	-	NGO0867	-	hypothetical protein
796	 49.49	0	851492..852283	+	263	59801269	-	NGO0868	-	OpcA
797	 51.63	0	852434..853078	+	214	59801270	-	NGO0869	-	hypothetical protein
798	 50.92	0	853097..855007	+	636	59801271	-	NGO0870	-	AbcZ
799	 51.21	0	855029..855358	+	109	59801272	-	NGO0871	-	hypothetical protein
800	 55.62	0	855507..856982	+	491	59801273	-	NGO0872	-	anthranilate synthase component I
801	 47.39	0	857066..858004	+	312	59801274	-	NGO0873	-	DNA modification methylase M.NGOI
802	 43.67	-1	858005..858865	+	286	59801275	-	NGO0874	-	type II DNA restriction endonuclease R.NGOI
803	 55.50	0	858882..860018	+	378	59801276	-	NGO0875	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
804	 51.35	0	860065..860547	+	160	59801277	-	NGO0876	-	hypothetical protein
805	 50.98	0	861698..861901	+	67	59801278	-	NGO0878	-	hypothetical protein
806	 43.75	-1	861993..862184	-	63	59801279	-	NGO0879	-	hypothetical protein
807	 49.67	0	862282..862887	+	201	59801280	-	NGO0880	-	hypothetical protein
808	 48.30	0	863630..864451	-	273	59801281	-	NGO0881	-	putative ORF B of IS150
809	 49.85	0	864823..865149	+	108	59801282	-	NGO0883	-	hypothetical protein
810	 56.37	0	865171..865578	+	135	59801283	-	NGO0884	-	hypothetical protein
811	 54.39	0	865554..865724	-	56	59801284	-	NGO0885	-	putative rubredoxin
812	 58.54	0	865857..866939	-	360	59801285	-	NGO0886	-	putative acyl-CoA dehydrogenase
813	 57.92	0	867077..867625	-	182	59801286	-	NGO0887	-	hypothetical protein
814	 60.54	+1	867765..868025	-	86	59801287	-	NGO0888	-	hypothetical protein
815	 50.62	0	868110..868271	+	53	59801288	-	NGO0889	-	hypothetical protein
816	 55.14	0	868321..870012	-	563	59801289	-	NGO0890	-	D-lactate dehydrogenase
817	 46.19	0	870109..870528	-	139	59801290	-	NGO0891	-	hypothetical protein
818	 56.74	0	870645..870926	+	93	59801291	-	NGO0892	-	hypothetical protein
819	 56.91	0	871108..874941	+	1277	59801292	-	NGO0893	-	putative oxidoreductase
820	 54.49	0	875018..876019	+	333	59801293	-	NGO0894	-	hypothetical protein
821	 49.18	0	876080..876262	-	60	59801294	-	NGO0895	-	hypothetical protein
822	 50.00	0	876435..876566	-	43	59801295	-	NGO0896	-	hypothetical protein
823	 45.45	-1	876614..876778	+	54	59801296	-	NGO0897	-	hypothetical protein
824	 53.25	0	878296..878772	-	158	59801297	-	NGO0899	-	hypothetical protein
825	 58.14	0	879163..880464	+	433	59801298	-	NGO0900	-	3-phosphoshikimate 1-carboxyvinyltransferase
826	 58.80	0	880542..881075	-	177	59801299	-	NGO0901	-	putative lipoprotein
827	 57.16	0	881132..882709	-	525	59801300	-	NGO0902	-	putative phopholipase D-family protein
828	 55.44	0	882770..884176	-	468	59801301	-	NGO0903	-	AgrA
829	 53.21	0	884459..885238	+	259	59801302	-	NGO0904	-	hypothetical protein
830	 54.27	0	885235..885936	+	233	59801303	-	NGO0905	-	hypothetical protein
831	 54.36	0	885933..887387	+	484	59801304	-	NGO0906	-	hypothetical protein
832	 47.62	0	887536..887955	-	139	59801305	-	NGO0907	-	FitB
833	 48.10	0	887955..888191	-	78	59801306	-	NGO0908	-	FitA
834	 48.30	0	888397..889218	-	273	59801307	-	NGO0909	-	putative IS150 ORF B
835	 52.30	0	890632..891522	-	296	59801308	-	NGO0912	-	succinyl-CoA synthetase subunit alpha
836	 51.50	0	891533..892699	-	388	59801309	sucC	NGO0913	-	succinyl-CoA synthetase subunit beta
837	 44.79	-1	892771..893058	-	95	59801310	-	NGO0914	-	hypothetical protein
838	 52.72	0	893178..894611	-	477	59801311	-	NGO0915	-	dihydrolipoamide dehydrogenase
839	 51.61	0	894872..896053	-	393	59801312	-	NGO0916	-	dihydrolipoamide acetyltransferase
840	 51.11	0	896153..898981	-	942	59801313	kgd	NGO0917	-	alpha-ketoglutarate decarboxylase
841	 52.57	0	899186..900469	-	427	59801314	gltA	NGO0918	-	type II citrate synthase
842	 43.37	-1	900581..900829	-	82	59801315	-	NGO0919	-	hypothetical protein
843	 48.97	0	900833..901561	-	242	59801316	sdhB	NGO0920	-	succinate dehydrogenase iron-sulfur subunit
844	 52.32	0	901660..903423	-	587	59801317	-	NGO0921	-	putative succinate dehydrogenase flavoprotein subunit
845	 46.78	0	903426..903767	-	113	59801318	-	NGO0922	-	putative succinate dehydrogenase hydrophobic membrane anchor protein
846	 47.62	0	903761..904138	-	125	59801319	-	NGO0923	-	putative fumarate reductase cytochrome b large subunit
847	 39.05	-2	904199..904408	-	69	59801320	-	NGO0924	-	hypothetical protein
848	 54.20	0	904425..905828	-	467	59801321	-	NGO0925	-	dihydrolipoamide dehydrogenase
849	 47.83	0	906077..906814	-	245	59801322	-	NGO0926	-	putative peroxiredoxin family protein/glutaredoxin
850	 42.42	-1	906917..907081	-	54	59801323	-	NGO0927	-	hypothetical protein
851	 52.35	0	907093..909369	-	758	59801324	-	NGO0928	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
852	 52.79	0	909505..910383	-	292	59801325	metF	NGO0929	-	5,10-methylenetetrahydrofolate reductase
853	 45.65	-1	910582..910857	+	91	59801326	rpmE2	NGO0930	-	50S ribosomal protein L31 type B
854	 53.17	0	910857..910982	+	41	59801327	rpmJ	NGO0931	-	50S ribosomal protein L36
855	 49.66	0	911041..911481	+	146	59801328	-	NGO0932	-	hypothetical protein
856	 52.54	0	911429..912568	+	379	59801329	metX	NGO0933	-	homoserine O-acetyltransferase
857	 52.92	0	912565..913146	+	193	59801330	-	NGO0934	-	hypothetical protein
858	 50.62	0	914253..914813	-	186	59801331	-	NGO0936	-	elongation factor P
859	 55.30	0	914856..916007	-	383	59801332	-	NGO0937	-	hypothetical protein
860	 47.57	0	916026..916334	-	102	59801333	-	NGO0938	-	hypothetical protein
861	 58.01	0	916342..916653	-	103	59801334	-	NGO0939	-	hypothetical protein
862	 58.81	0	916655..917596	+	313	59801335	-	NGO0940	-	putative tRNA delta transferase
863	 58.06	0	917600..918319	+	239	59801336	-	NGO0941	-	putative cytosine deaminase
864	 57.87	0	918324..918812	+	162	59801337	-	NGO0942	-	hypothetical protein
865	 59.47	+1	921445..922320	+	291	59801338	dapA	NGO0947	-	dihydrodipicolinate synthase
866	 57.23	0	922329..923525	+	398	59801339	-	NGO0948	-	hypothetical protein
867	 53.27	0	923582..924514	-	310	59801340	-	NGO0949	-	proline iminopeptidase
868	 47.14	0	924507..924803	-	98	59801341	-	NGO0950	-	hypothetical protein
869	 50.45	0	926135..928903	+	922	59801342	-	NGO0952	-	putative TonB-dependent receptor protein
870	 44.91	-1	928934..929149	+	71	59801343	-	NGO0953	-	hypothetical protein
871	 39.33	-2	929779..929928	-	49	59801344	-	NGO0955	-	hypothetical protein
872	 54.43	0	929928..931145	-	405	59801345	-	NGO0956	-	aspartate kinase
873	 44.24	-1	931182..931346	+	54	59801346	-	NGO0957	-	hypothetical protein
874	 55.14	0	931347..932075	-	242	59801347	-	NGO0958	-	putative ribonuclease PH
875	 58.49	0	932157..932621	-	154	59801348	-	NGO0959	-	hypothetical protein
876	 56.89	0	932839..933615	+	258	59801349	-	NGO0960	-	hypothetical protein
877	 55.91	0	933860..934714	+	284	59801350	-	NGO0961	-	hypothetical protein
878	 57.14	0	934704..935963	+	419	59801351	-	NGO0962	-	nicotinate phosphoribosyltransferase
879	 56.89	0	936055..937773	+	572	59801352	argS	NGO0963	-	arginyl-tRNA synthetase
880	 47.13	0	939735..939995	+	86	59801353	-	NGO0967	-	hypothetical protein
881	 55.42	0	940182..940928	-	248	59801354	-	NGO0968	-	putative ABC transporter, permease protein, amino acid
882	 56.55	0	941107..941808	-	233	59801355	-	NGO0969	-	hypothetical protein
883	 53.87	0	941847..942518	-	223	59801356	-	NGO0970	-	ribose-5-phosphate isomerase A
884	 56.11	0	942595..943077	-	160	59801357	ispF	NGO0971	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
52.66	MEAN

6.57	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.