IslandPath Analysis: Neisseria gonorrhoeae FA 1090



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.66   STD DEV: 6.57
Neisseria gonorrhoeae FA 1090, complete genome - 1..2153922
2002 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
748	 58.55	0	802735..804594	+	619	59801221	-	NGO0809	-	dihydroxy-acid dehydratase
749	 58.42	0	804636..804938	+	100	59801222	-	NGO0810	-	hypothetical protein
750	 54.30	0	804781..805686	-	301	59801223	-	NGO0811	-	hypothetical protein
751	 52.91	0	805132..805749	+	205	59801224	-	NGO0812	-	hypothetical protein
752	 55.94	0	805845..806897	-	350	59801225	-	NGO0813	-	putative biotin synthase
753	 58.17	0	806915..807067	-	50	59801226	-	NGO0814	-	hypothetical protein
754	 58.32	0	807104..808480	-	458	59801227	-	NGO0815	-	putative UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
755	 51.63	0	808542..808847	-	101	59801228	-	NGO0816	-	hypothetical protein
756	 46.46	0	809472..809669	-	65	59801229	-	NGO0818	-	hypothetical protein
757	 53.44	0	809679..810464	-	261	59801230	-	NGO0819	-	putative RNA methyltransferase
758	 52.54	0	810538..811818	-	426	59801231	-	NGO0820	-	hypothetical protein
759	 52.60	0	811916..812875	-	319	59801232	-	NGO0821	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
760	 52.74	0	813087..813488	+	133	59801233	-	NGO0822	-	hypothetical protein
761	 57.58	0	813556..813753	-	65	59801234	-	NGO0823	-	hypothetical protein
762	 55.56	0	814566..814907	-	113	59801235	-	NGO0825	-	putative ferredoxin
763	 51.52	0	814963..815721	-	252	59801236	-	NGO0826	-	hypothetical protein
764	 49.47	0	815760..816323	-	187	59801237	-	NGO0827	-	hypothetical protein
765	 44.90	-1	816373..816519	-	48	59801238	-	NGO0828	-	hypothetical protein
766	 58.78	0	816596..818458	-	620	59801239	hscA	NGO0829	-	chaperone protein HscA
767	 54.52	0	818629..819501	+	290	59801240	-	NGO0830	-	putative poly-isoprenyl transferase
768	 63.54	+1	819576..820949	+	457	59801241	-	NGO0831	-	putative oxidoreductase
769	 60.14	+1	820972..821691	+	239	59801242	-	NGO0832	-	short chain dehydrogenase
770	 53.87	0	821857..822528	+	223	59801243	-	NGO0834	-	hypothetical protein
771	 54.32	0	822902..823549	+	215	59801244	-	NGO0835	-	GNA1162
772	 43.75	-1	823589..823732	+	47	59801245	-	NGO0836	-	hypothetical protein
773	 54.41	0	825812..826480	+	222	59801246	-	NGO0841	-	hypothetical protein
774	 55.01	0	826477..827145	+	222	59801247	-	NGO0842	-	hypothetical protein
775	 43.75	-1	827290..827577	-	95	59801248	-	NGO0843	-	hypothetical protein
776	 54.63	0	827592..828488	-	298	59801249	-	NGO0844	-	acetylglutamate kinase
777	 57.56	0	828658..829788	+	376	59801250	-	NGO0845	-	hypothetical protein
778	 54.58	0	829862..830713	+	283	59801251	-	NGO0846	-	prolipoprotein diacylglyceryl transferase
779	 55.51	0	830798..831460	-	220	59801252	-	NGO0847	-	hypothetical protein
780	 55.92	0	831659..833212	-	517	59801253	-	NGO0848	-	2-isopropylmalate synthase
781	 58.27	0	834819..836081	+	420	59801254	proA	NGO0850	-	gamma-glutamyl phosphate reductase
782	 55.70	0	836257..839301	-	1014	59801255	-	NGO0851	-	putative cell-division protein
783	 56.53	0	839467..840147	+	226	59801256	-	NGO0852	-	hypothetical protein
784	 56.94	0	840176..840535	+	119	59801257	-	NGO0853	-	hypothetical protein
785	 31.16	-2	840823..840960	-	45	59801258	-	NGO0854	-	hypothetical protein
786	 52.66	0	841711..842067	-	118	59801259	-	NGO0857	-	putative dihydroneopterin aldolase
787	 55.89	0	842123..842725	+	200	59801260	-	NGO0858	-	hypothetical protein
788	 57.21	0	842817..843662	+	281	59801261	-	NGO0859	-	hypothetical protein
789	 48.58	0	843668..844126	+	152	59801262	-	NGO0860	-	hypothetical protein
790	 46.59	0	844152..844400	-	82	59801263	-	NGO0861	-	hypothetical protein
791	 53.54	0	844641..845615	+	324	59801264	-	NGO0862	-	fructose-1,6-bisphosphatase
792	 47.03	0	845774..845992	-	72	59801265	-	NGO0863	-	hypothetical protein
793	 39.92	-1	848531..848773	+	80	59801266	-	NGO0865	-	hypothetical protein
794	 54.20	0	848840..850090	+	416	59801267	-	NGO0866	-	serine hydroxymethyltransferase
795	 43.08	-1	850163..850552	-	129	59801268	-	NGO0867	-	hypothetical protein
796	 49.49	0	851492..852283	+	263	59801269	-	NGO0868	-	OpcA
797	 51.63	0	852434..853078	+	214	59801270	-	NGO0869	-	hypothetical protein
798	 50.92	0	853097..855007	+	636	59801271	-	NGO0870	-	AbcZ
799	 51.21	0	855029..855358	+	109	59801272	-	NGO0871	-	hypothetical protein
800	 55.62	0	855507..856982	+	491	59801273	-	NGO0872	-	anthranilate synthase component I
801	 47.39	0	857066..858004	+	312	59801274	-	NGO0873	-	DNA modification methylase M.NGOI
802	 43.67	-1	858005..858865	+	286	59801275	-	NGO0874	-	type II DNA restriction endonuclease R.NGOI
803	 55.50	0	858882..860018	+	378	59801276	-	NGO0875	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
804	 51.35	0	860065..860547	+	160	59801277	-	NGO0876	-	hypothetical protein
805	 50.98	0	861698..861901	+	67	59801278	-	NGO0878	-	hypothetical protein
806	 43.75	-1	861993..862184	-	63	59801279	-	NGO0879	-	hypothetical protein
807	 49.67	0	862282..862887	+	201	59801280	-	NGO0880	-	hypothetical protein
808	 48.30	0	863630..864451	-	273	59801281	-	NGO0881	-	putative ORF B of IS150
809	 49.85	0	864823..865149	+	108	59801282	-	NGO0883	-	hypothetical protein
810	 56.37	0	865171..865578	+	135	59801283	-	NGO0884	-	hypothetical protein
811	 54.39	0	865554..865724	-	56	59801284	-	NGO0885	-	putative rubredoxin
812	 58.54	0	865857..866939	-	360	59801285	-	NGO0886	-	putative acyl-CoA dehydrogenase
813	 57.92	0	867077..867625	-	182	59801286	-	NGO0887	-	hypothetical protein
814	 60.54	+1	867765..868025	-	86	59801287	-	NGO0888	-	hypothetical protein
815	 50.62	0	868110..868271	+	53	59801288	-	NGO0889	-	hypothetical protein
816	 55.14	0	868321..870012	-	563	59801289	-	NGO0890	-	D-lactate dehydrogenase
817	 46.19	0	870109..870528	-	139	59801290	-	NGO0891	-	hypothetical protein
818	 56.74	0	870645..870926	+	93	59801291	-	NGO0892	-	hypothetical protein
819	 56.91	0	871108..874941	+	1277	59801292	-	NGO0893	-	putative oxidoreductase
820	 54.49	0	875018..876019	+	333	59801293	-	NGO0894	-	hypothetical protein
821	 49.18	0	876080..876262	-	60	59801294	-	NGO0895	-	hypothetical protein
822	 50.00	0	876435..876566	-	43	59801295	-	NGO0896	-	hypothetical protein
823	 45.45	-1	876614..876778	+	54	59801296	-	NGO0897	-	hypothetical protein
824	 53.25	0	878296..878772	-	158	59801297	-	NGO0899	-	hypothetical protein
825	 58.14	0	879163..880464	+	433	59801298	-	NGO0900	-	3-phosphoshikimate 1-carboxyvinyltransferase
826	 58.80	0	880542..881075	-	177	59801299	-	NGO0901	-	putative lipoprotein
827	 57.16	0	881132..882709	-	525	59801300	-	NGO0902	-	putative phopholipase D-family protein
828	 55.44	0	882770..884176	-	468	59801301	-	NGO0903	-	AgrA
829	 53.21	0	884459..885238	+	259	59801302	-	NGO0904	-	hypothetical protein
830	 54.27	0	885235..885936	+	233	59801303	-	NGO0905	-	hypothetical protein
831	 54.36	0	885933..887387	+	484	59801304	-	NGO0906	-	hypothetical protein
832	 47.62	0	887536..887955	-	139	59801305	-	NGO0907	-	FitB
833	 48.10	0	887955..888191	-	78	59801306	-	NGO0908	-	FitA
834	 48.30	0	888397..889218	-	273	59801307	-	NGO0909	-	putative IS150 ORF B
835	 52.30	0	890632..891522	-	296	59801308	-	NGO0912	-	succinyl-CoA synthetase subunit alpha
836	 51.50	0	891533..892699	-	388	59801309	sucC	NGO0913	-	succinyl-CoA synthetase subunit beta
837	 44.79	-1	892771..893058	-	95	59801310	-	NGO0914	-	hypothetical protein
838	 52.72	0	893178..894611	-	477	59801311	-	NGO0915	-	dihydrolipoamide dehydrogenase
839	 51.61	0	894872..896053	-	393	59801312	-	NGO0916	-	dihydrolipoamide acetyltransferase
840	 51.11	0	896153..898981	-	942	59801313	kgd	NGO0917	-	alpha-ketoglutarate decarboxylase
841	 52.57	0	899186..900469	-	427	59801314	gltA	NGO0918	-	type II citrate synthase
842	 43.37	-1	900581..900829	-	82	59801315	-	NGO0919	-	hypothetical protein
843	 48.97	0	900833..901561	-	242	59801316	sdhB	NGO0920	-	succinate dehydrogenase iron-sulfur subunit
844	 52.32	0	901660..903423	-	587	59801317	-	NGO0921	-	putative succinate dehydrogenase flavoprotein subunit
845	 46.78	0	903426..903767	-	113	59801318	-	NGO0922	-	putative succinate dehydrogenase hydrophobic membrane anchor protein
846	 47.62	0	903761..904138	-	125	59801319	-	NGO0923	-	putative fumarate reductase cytochrome b large subunit
847	 39.05	-2	904199..904408	-	69	59801320	-	NGO0924	-	hypothetical protein
52.66	MEAN

6.57	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.