IslandPath Analysis: Neisseria gonorrhoeae FA 1090



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.66   STD DEV: 6.57
Neisseria gonorrhoeae FA 1090, complete genome - 1..2153922
2002 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
696	 53.33	0	751362..751976	+	204	59801169	-	NGO0754	-	putative molybdopterin-guanine dinucleotide biosynthesis protein
697	 53.72	0	752139..752756	+	205	161572975	-	NGO0755	-	riboflavin synthase subunit alpha
698	 54.40	0	752764..753627	+	287	59801171	-	NGO0756	-	hypothetical protein
699	 54.25	0	753640..754074	-	144	59801172	-	NGO0757	-	hypothetical protein
700	 54.55	0	754220..754912	+	230	59801173	-	NGO0758	-	putative ribulose-phosphate 3-epimerase
701	 49.66	0	755001..755147	-	48	59801174	-	NGO0759	-	hypothetical protein
702	 61.05	+1	755151..756182	-	343	59801175	ruvB	NGO0760	-	Holliday junction DNA helicase B
703	 53.07	0	756266..756574	-	102	59801176	-	NGO0761	-	hypothetical protein
704	 55.32	0	756606..756746	+	46	59801177	-	NGO0762	-	hypothetical protein
705	 59.77	+1	756992..758224	-	410	59801178	cca	NGO0763	-	multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase
706	 52.85	0	758303..759931	-	542	59801179	-	NGO0764	-	putative ABC-transporter, ATP-binding protein
707	 53.33	0	760081..760455	+	124	59801180	-	NGO0765	-	hypothetical protein
708	 52.63	0	760504..762042	+	512	59801181	-	NGO0766	-	putative peptidyl-prolyl cis-trans isomerase
709	 54.85	0	762109..762726	+	205	59801182	-	NGO0767	-	putative recombination protein
710	 45.63	-1	762907..763158	-	83	59801183	-	NGO0768	-	hypothetical protein
711	 55.37	0	763287..764534	+	415	59801184	-	NGO0769	-	LolC
712	 57.90	0	764527..765222	+	231	59801185	-	NGO0770	-	hypothetical protein
713	 56.76	0	765289..767034	+	581	59801186	-	NGO0771	-	putative exodeoxyribonuclease V alpha subunit
714	 46.71	0	767722..768723	+	333	59801187	-	NGO0773	-	Irg1
715	 52.46	0	768871..769440	+	189	59801188	-	NGO0774	-	hypothetical protein
716	 52.86	0	769563..772025	+	820	59801189	-	NGO0775	-	hypothetical protein
717	 48.05	0	772015..772605	-	196	59801190	-	NGO0776	-	hypothetical protein
718	 52.59	0	772207..772476	+	89	59801191	-	NGO0777	-	DbhA
719	 52.41	0	772652..773086	-	144	59801192	-	NGO0778	-	hypothetical protein
720	 55.89	0	773079..774386	-	435	59801193	-	NGO0779	-	homoserine dehydrogenase
721	 51.61	0	774582..774953	+	123	59801194	-	NGO0780	-	hypothetical protein
722	 50.70	0	775030..776952	+	640	59801195	-	NGO0781	-	putative ABC transporter, ATP-binding protein
723	 45.38	-1	776978..777334	+	118	59801196	-	NGO0782	-	hypothetical protein
724	 47.17	0	777425..777937	+	170	59801197	-	NGO0783	-	hypothetical protein
725	 42.94	-1	777985..778161	+	58	59801198	-	NGO0784	-	hypothetical protein
726	 52.01	0	778408..778830	+	140	59801199	-	NGO0785	-	hypothetical protein
727	 53.03	0	778867..779526	-	219	59801200	-	NGO0786	-	uracil-DNA glycosylase
728	 52.94	0	779607..780014	+	135	59801201	-	NGO0787	-	hypothetical protein
729	 53.16	0	780029..780976	+	315	59801202	-	NGO0788	-	GNA1220
730	 52.38	0	781083..782153	-	356	59801203	-	NGO0789	-	hypothetical protein
731	 47.80	0	782211..782369	-	52	59801204	-	NGO0790	-	hypothetical protein
732	 51.45	0	782338..782613	+	91	59801205	-	NGO0791	-	hypothetical protein
733	 55.15	0	782666..783238	+	190	59801206	-	NGO0792	-	putative lipoate-protein ligase
734	 53.86	0	783231..784214	+	327	59801207	-	NGO0793	-	lipoyl synthase
735	 52.69	0	784689..785153	+	154	59801208	-	NGO0794	-	BfrA
736	 46.84	0	785181..785654	+	157	59801209	-	NGO0795	-	BfrB
737	 46.77	0	785742..786314	-	190	59801210	-	NGO0796	-	hypothetical protein
738	 55.03	0	785985..786302	+	105	59801211	-	NGO0797	-	putative transcriptional regulator
739	 57.87	0	786351..788909	+	852	59801212	-	NGO0798	-	putative uridylyltransferase
740	 57.10	0	789056..790519	+	487	59801213	-	NGO0799	-	inositol-5-monophosphate dehydrogenase
741	 57.03	0	790591..790839	-	82	59801214	-	NGO0800	-	hypothetical protein
742	 53.03	0	790855..793230	-	791	59801215	-	NGO0801	-	putative ribonuclease
743	 45.19	-1	793665..793934	+	89	59801216	-	NGO0802	-	hypothetical protein
744	 57.12	0	793931..795742	-	603	59801217	-	NGO0803	-	putative GTP-binding protein
745	 59.60	+1	795859..796749	-	296	59801218	-	NGO0804	-	hypothetical protein
746	 56.87	0	796889..797470	+	193	59801219	-	NGO0805	-	hypothetical protein
747	 58.82	0	797898..798980	+	360	59801220	-	NGO0806	-	hypothetical protein
748	 58.55	0	802735..804594	+	619	59801221	-	NGO0809	-	dihydroxy-acid dehydratase
749	 58.42	0	804636..804938	+	100	59801222	-	NGO0810	-	hypothetical protein
750	 54.30	0	804781..805686	-	301	59801223	-	NGO0811	-	hypothetical protein
751	 52.91	0	805132..805749	+	205	59801224	-	NGO0812	-	hypothetical protein
752	 55.94	0	805845..806897	-	350	59801225	-	NGO0813	-	putative biotin synthase
753	 58.17	0	806915..807067	-	50	59801226	-	NGO0814	-	hypothetical protein
754	 58.32	0	807104..808480	-	458	59801227	-	NGO0815	-	putative UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
755	 51.63	0	808542..808847	-	101	59801228	-	NGO0816	-	hypothetical protein
756	 46.46	0	809472..809669	-	65	59801229	-	NGO0818	-	hypothetical protein
757	 53.44	0	809679..810464	-	261	59801230	-	NGO0819	-	putative RNA methyltransferase
758	 52.54	0	810538..811818	-	426	59801231	-	NGO0820	-	hypothetical protein
759	 52.60	0	811916..812875	-	319	59801232	-	NGO0821	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
760	 52.74	0	813087..813488	+	133	59801233	-	NGO0822	-	hypothetical protein
761	 57.58	0	813556..813753	-	65	59801234	-	NGO0823	-	hypothetical protein
762	 55.56	0	814566..814907	-	113	59801235	-	NGO0825	-	putative ferredoxin
763	 51.52	0	814963..815721	-	252	59801236	-	NGO0826	-	hypothetical protein
764	 49.47	0	815760..816323	-	187	59801237	-	NGO0827	-	hypothetical protein
765	 44.90	-1	816373..816519	-	48	59801238	-	NGO0828	-	hypothetical protein
766	 58.78	0	816596..818458	-	620	59801239	hscA	NGO0829	-	chaperone protein HscA
767	 54.52	0	818629..819501	+	290	59801240	-	NGO0830	-	putative poly-isoprenyl transferase
768	 63.54	+1	819576..820949	+	457	59801241	-	NGO0831	-	putative oxidoreductase
769	 60.14	+1	820972..821691	+	239	59801242	-	NGO0832	-	short chain dehydrogenase
770	 53.87	0	821857..822528	+	223	59801243	-	NGO0834	-	hypothetical protein
771	 54.32	0	822902..823549	+	215	59801244	-	NGO0835	-	GNA1162
772	 43.75	-1	823589..823732	+	47	59801245	-	NGO0836	-	hypothetical protein
773	 54.41	0	825812..826480	+	222	59801246	-	NGO0841	-	hypothetical protein
774	 55.01	0	826477..827145	+	222	59801247	-	NGO0842	-	hypothetical protein
775	 43.75	-1	827290..827577	-	95	59801248	-	NGO0843	-	hypothetical protein
776	 54.63	0	827592..828488	-	298	59801249	-	NGO0844	-	acetylglutamate kinase
777	 57.56	0	828658..829788	+	376	59801250	-	NGO0845	-	hypothetical protein
778	 54.58	0	829862..830713	+	283	59801251	-	NGO0846	-	prolipoprotein diacylglyceryl transferase
779	 55.51	0	830798..831460	-	220	59801252	-	NGO0847	-	hypothetical protein
780	 55.92	0	831659..833212	-	517	59801253	-	NGO0848	-	2-isopropylmalate synthase
781	 58.27	0	834819..836081	+	420	59801254	proA	NGO0850	-	gamma-glutamyl phosphate reductase
782	 55.70	0	836257..839301	-	1014	59801255	-	NGO0851	-	putative cell-division protein
783	 56.53	0	839467..840147	+	226	59801256	-	NGO0852	-	hypothetical protein
784	 56.94	0	840176..840535	+	119	59801257	-	NGO0853	-	hypothetical protein
785	 31.16	-2	840823..840960	-	45	59801258	-	NGO0854	-	hypothetical protein
786	 52.66	0	841711..842067	-	118	59801259	-	NGO0857	-	putative dihydroneopterin aldolase
787	 55.89	0	842123..842725	+	200	59801260	-	NGO0858	-	hypothetical protein
788	 57.21	0	842817..843662	+	281	59801261	-	NGO0859	-	hypothetical protein
789	 48.58	0	843668..844126	+	152	59801262	-	NGO0860	-	hypothetical protein
790	 46.59	0	844152..844400	-	82	59801263	-	NGO0861	-	hypothetical protein
791	 53.54	0	844641..845615	+	324	59801264	-	NGO0862	-	fructose-1,6-bisphosphatase
792	 47.03	0	845774..845992	-	72	59801265	-	NGO0863	-	hypothetical protein
793	 39.92	-1	848531..848773	+	80	59801266	-	NGO0865	-	hypothetical protein
794	 54.20	0	848840..850090	+	416	59801267	-	NGO0866	-	serine hydroxymethyltransferase
795	 43.08	-1	850163..850552	-	129	59801268	-	NGO0867	-	hypothetical protein
52.66	MEAN

6.57	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.