IslandPath Analysis: Neisseria gonorrhoeae FA 1090



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.66   STD DEV: 6.57
Neisseria gonorrhoeae FA 1090, complete genome - 1..2153922
2002 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
655	 58.79	0	698003..699094	-	363	59801128	-	NGO0704	-	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein
656	 39.84	-1	708430..708798	+	122	59801129	-	NGO0709	-	hypothetical protein
657	 54.10	0	709174..710223	-	349	59801130	-	NGO0710	-	putative adenine glycosylase
658	 52.21	0	710377..711393	+	338	59801131	-	NGO0711	-	putative alcohol dehydrogenase
659	 41.94	-1	711637..711822	+	61	59801132	-	NGO0712	-	hypothetical protein
660	 60.72	+1	712011..712649	-	212	59801133	-	NGO0713	-	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase
661	 58.01	0	712859..714694	-	611	59801134	-	NGO0714	-	phosphogluconate dehydratase
662	 53.04	0	715214..716659	+	481	59801135	-	NGO0715	-	glucose-6-phosphate 1-dehydrogenase
663	 53.02	0	716811..717506	+	231	59801136	-	NGO0716	-	hypothetical protein
664	 57.95	0	717487..718473	+	328	59801137	glk	NGO0717	-	glucokinase
665	 56.42	0	718522..719370	+	282	59801138	-	NGO0718	-	RpiR family transcriptional regulator
666	 55.19	0	719596..721242	+	548	59801139	pgi	NGO0719	-	glucose-6-phosphate isomerase
667	 47.06	0	721256..721459	+	67	59801140	-	NGO0720	-	putative phage associated protein
668	 50.20	0	721459..722472	+	337	59801141	-	NGO0721	-	putative phage associated protein
669	 51.06	0	722517..722657	+	46	59801142	-	NGO0722	-	putative phage associated protein
670	 54.62	0	722896..723144	+	82	59801143	-	NGO0723	-	putative phage associated protein
671	 52.85	0	723086..723208	+	40	59801144	-	NGO0724	-	putative phage associated protein
672	 55.34	0	723158..723466	-	102	59801145	-	NGO0725	-	putative phage associated protein
673	 62.11	+1	726767..727315	-	182	59801146	-	NGO0727	-	putative baseplate protein, putative phage associated protein
674	 60.47	+1	727336..728238	-	300	59801147	-	NGO0728	-	putative phage associated protein
675	 57.28	0	728344..728556	-	70	59801148	-	NGO0729	-	putative phage associated protein
676	 54.74	0	728611..729264	-	217	59801149	-	NGO0730	-	IS1016 transposase
677	 54.74	0	729286..729570	-	94	59801150	-	NGO0731	-	putative phage associated protein
678	 49.62	0	729607..729870	-	87	59801151	-	NGO0732	-	putative phage associated protein
679	 52.69	0	731378..732157	-	259	59801152	-	NGO0734	-	putative oxidoreductase
680	 35.22	-2	732156..732314	+	52	59801153	-	NGO0735	-	hypothetical protein
681	 19.87	-2	732449..732745	-	98	59801154	-	NGO0736	-	hypothetical protein
682	 57.03	0	733057..734115	+	352	59801155	-	NGO0738	-	putative DNA-damage-inducibile protein
683	 53.08	0	734185..736200	-	671	59801156	-	NGO0739	-	putative ATP-dependent DNA helicase
684	 59.22	0	736220..736984	-	254	59801157	aroD	NGO0740	-	3-dehydroquinate dehydratase
685	 56.16	0	737184..738230	+	348	59801158	recA	NGO0741	-	recombinase A
686	 53.87	0	738883..739218	-	111	59801159	-	NGO0742	-	hypothetical protein
687	 59.23	0	739299..741422	-	707	59801160	-	NGO0743	-	DNA polymerase III subunits gamma and tau
688	 58.78	0	741517..743493	-	658	59801161	mutL	NGO0744	-	DNA mismatch repair protein
689	 42.47	-1	743637..743822	+	61	59801162	-	NGO0745	-	hypothetical protein
690	 54.56	0	743833..744501	+	222	59801163	-	NGO0746	-	putative O-methyltransferase
691	 53.78	0	744501..745214	+	237	59801164	-	NGO0747	-	hypothetical protein
692	 56.58	0	745262..745747	+	161	59801165	-	NGO0748	-	putative phosphoribosylaminoimidazole carboxylase catalytic subunit
693	 45.65	-1	747669..748577	+	302	59801166	-	NGO0751	-	hypothetical protein
694	 55.86	0	748733..749389	-	218	59801167	-	NGO0752	-	NarL/NarP
695	 53.73	0	749386..751155	-	589	59801168	-	NGO0753	-	NarX/NarQ
696	 53.33	0	751362..751976	+	204	59801169	-	NGO0754	-	putative molybdopterin-guanine dinucleotide biosynthesis protein
697	 53.72	0	752139..752756	+	205	161572975	-	NGO0755	-	riboflavin synthase subunit alpha
698	 54.40	0	752764..753627	+	287	59801171	-	NGO0756	-	hypothetical protein
699	 54.25	0	753640..754074	-	144	59801172	-	NGO0757	-	hypothetical protein
700	 54.55	0	754220..754912	+	230	59801173	-	NGO0758	-	putative ribulose-phosphate 3-epimerase
701	 49.66	0	755001..755147	-	48	59801174	-	NGO0759	-	hypothetical protein
702	 61.05	+1	755151..756182	-	343	59801175	ruvB	NGO0760	-	Holliday junction DNA helicase B
703	 53.07	0	756266..756574	-	102	59801176	-	NGO0761	-	hypothetical protein
704	 55.32	0	756606..756746	+	46	59801177	-	NGO0762	-	hypothetical protein
705	 59.77	+1	756992..758224	-	410	59801178	cca	NGO0763	-	multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase
706	 52.85	0	758303..759931	-	542	59801179	-	NGO0764	-	putative ABC-transporter, ATP-binding protein
707	 53.33	0	760081..760455	+	124	59801180	-	NGO0765	-	hypothetical protein
708	 52.63	0	760504..762042	+	512	59801181	-	NGO0766	-	putative peptidyl-prolyl cis-trans isomerase
709	 54.85	0	762109..762726	+	205	59801182	-	NGO0767	-	putative recombination protein
710	 45.63	-1	762907..763158	-	83	59801183	-	NGO0768	-	hypothetical protein
711	 55.37	0	763287..764534	+	415	59801184	-	NGO0769	-	LolC
712	 57.90	0	764527..765222	+	231	59801185	-	NGO0770	-	hypothetical protein
713	 56.76	0	765289..767034	+	581	59801186	-	NGO0771	-	putative exodeoxyribonuclease V alpha subunit
714	 46.71	0	767722..768723	+	333	59801187	-	NGO0773	-	Irg1
715	 52.46	0	768871..769440	+	189	59801188	-	NGO0774	-	hypothetical protein
716	 52.86	0	769563..772025	+	820	59801189	-	NGO0775	-	hypothetical protein
717	 48.05	0	772015..772605	-	196	59801190	-	NGO0776	-	hypothetical protein
718	 52.59	0	772207..772476	+	89	59801191	-	NGO0777	-	DbhA
719	 52.41	0	772652..773086	-	144	59801192	-	NGO0778	-	hypothetical protein
720	 55.89	0	773079..774386	-	435	59801193	-	NGO0779	-	homoserine dehydrogenase
721	 51.61	0	774582..774953	+	123	59801194	-	NGO0780	-	hypothetical protein
722	 50.70	0	775030..776952	+	640	59801195	-	NGO0781	-	putative ABC transporter, ATP-binding protein
723	 45.38	-1	776978..777334	+	118	59801196	-	NGO0782	-	hypothetical protein
724	 47.17	0	777425..777937	+	170	59801197	-	NGO0783	-	hypothetical protein
725	 42.94	-1	777985..778161	+	58	59801198	-	NGO0784	-	hypothetical protein
726	 52.01	0	778408..778830	+	140	59801199	-	NGO0785	-	hypothetical protein
727	 53.03	0	778867..779526	-	219	59801200	-	NGO0786	-	uracil-DNA glycosylase
728	 52.94	0	779607..780014	+	135	59801201	-	NGO0787	-	hypothetical protein
729	 53.16	0	780029..780976	+	315	59801202	-	NGO0788	-	GNA1220
730	 52.38	0	781083..782153	-	356	59801203	-	NGO0789	-	hypothetical protein
731	 47.80	0	782211..782369	-	52	59801204	-	NGO0790	-	hypothetical protein
732	 51.45	0	782338..782613	+	91	59801205	-	NGO0791	-	hypothetical protein
733	 55.15	0	782666..783238	+	190	59801206	-	NGO0792	-	putative lipoate-protein ligase
734	 53.86	0	783231..784214	+	327	59801207	-	NGO0793	-	lipoyl synthase
735	 52.69	0	784689..785153	+	154	59801208	-	NGO0794	-	BfrA
736	 46.84	0	785181..785654	+	157	59801209	-	NGO0795	-	BfrB
737	 46.77	0	785742..786314	-	190	59801210	-	NGO0796	-	hypothetical protein
738	 55.03	0	785985..786302	+	105	59801211	-	NGO0797	-	putative transcriptional regulator
739	 57.87	0	786351..788909	+	852	59801212	-	NGO0798	-	putative uridylyltransferase
740	 57.10	0	789056..790519	+	487	59801213	-	NGO0799	-	inositol-5-monophosphate dehydrogenase
741	 57.03	0	790591..790839	-	82	59801214	-	NGO0800	-	hypothetical protein
742	 53.03	0	790855..793230	-	791	59801215	-	NGO0801	-	putative ribonuclease
743	 45.19	-1	793665..793934	+	89	59801216	-	NGO0802	-	hypothetical protein
744	 57.12	0	793931..795742	-	603	59801217	-	NGO0803	-	putative GTP-binding protein
745	 59.60	+1	795859..796749	-	296	59801218	-	NGO0804	-	hypothetical protein
746	 56.87	0	796889..797470	+	193	59801219	-	NGO0805	-	hypothetical protein
747	 58.82	0	797898..798980	+	360	59801220	-	NGO0806	-	hypothetical protein
748	 58.55	0	802735..804594	+	619	59801221	-	NGO0809	-	dihydroxy-acid dehydratase
749	 58.42	0	804636..804938	+	100	59801222	-	NGO0810	-	hypothetical protein
750	 54.30	0	804781..805686	-	301	59801223	-	NGO0811	-	hypothetical protein
751	 52.91	0	805132..805749	+	205	59801224	-	NGO0812	-	hypothetical protein
752	 55.94	0	805845..806897	-	350	59801225	-	NGO0813	-	putative biotin synthase
753	 58.17	0	806915..807067	-	50	59801226	-	NGO0814	-	hypothetical protein
754	 58.32	0	807104..808480	-	458	59801227	-	NGO0815	-	putative UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
52.66	MEAN

6.57	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.