IslandPathversion 1.0

IslandPath Analysis: Neisseria gonorrhoeae FA 1090



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.66 STD DEV: 6.57
Neisseria gonorrhoeae FA 1090, complete genome - 1..2153922
2002 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
634	 54.10	0	669169..670338	+	389	59801107	-	NGO0680	-	hypothetical protein
635	 56.34	0	670461..671138	+	225	59801108	radC	NGO0681	-	DNA repair protein RadC
636	 53.31	0	671211..671936	+	241	59801109	-	NGO0682	-	hypothetical protein
637	 56.83	0	672088..673368	+	426	59801110	-	NGO0683	-	hypothetical protein
638	 57.39	0	673443..674552	+	369	59801111	-	NGO0684	-	putative GTP binding protein
639	 59.10	0	674549..677005	+	818	59801112	-	NGO0685	-	putative P-type cation-transporting ATPase
640	 30.72	-2	677179..677331	+	50	59801113	-	NGO0686	-	hypothetical protein
641	 52.77	0	677673..678449	-	258	59801114	-	NGO0687	-	putative ferredoxin-NADP reductase
642	 56.10	0	678637..679431	-	264	59801115	-	NGO0688	-	hypothetical protein
643	 54.47	0	679478..680887	-	469	59801116	-	NGO0689	-	threonine synthase
644	 57.18	0	680960..681328	-	122	59801117	-	NGO0690	-	hypothetical protein
645	 45.93	-1	684226..684741	-	171	59801118	-	NGO0693	-	hypothetical protein
646	 41.58	-1	684728..687346	-	872	59801119	-	NGO0694	-	hypothetical protein
647	 58.20	0	688651..689961	+	436	59801120	-	NGO0696	-	recombination factor protein RarA
648	 49.42	0	690060..693086	+	1008	59801121	-	NGO0697	-	putative type I restriction enzyme
649	 44.87	-1	693136..693369	+	77	59801122	-	NGO0698	-	hypothetical protein
650	 37.07	-2	693416..694618	+	400	59801123	-	NGO0699	-	hypothetical protein
651	 27.81	-2	694611..695171	+	186	59801124	-	NGO0700	-	hypothetical protein
652	 27.05	-2	695182..696024	+	280	59801125	-	NGO0701	-	hypothetical protein
653	 44.26	-1	696091..697692	+	533	59801126	-	NGO0702	-	hypothetical protein
654	 41.85	-1	697719..697988	-	89	59801127	-	NGO0703	-	hypothetical protein
655	 58.79	0	698003..699094	-	363	59801128	-	NGO0704	-	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein
656	 39.84	-1	708430..708798	+	122	59801129	-	NGO0709	-	hypothetical protein
657	 54.10	0	709174..710223	-	349	59801130	-	NGO0710	-	putative adenine glycosylase
658	 52.21	0	710377..711393	+	338	59801131	-	NGO0711	-	putative alcohol dehydrogenase
659	 41.94	-1	711637..711822	+	61	59801132	-	NGO0712	-	hypothetical protein
660	 60.72	+1	712011..712649	-	212	59801133	-	NGO0713	-	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase
661	 58.01	0	712859..714694	-	611	59801134	-	NGO0714	-	phosphogluconate dehydratase
662	 53.04	0	715214..716659	+	481	59801135	-	NGO0715	-	glucose-6-phosphate 1-dehydrogenase
663	 53.02	0	716811..717506	+	231	59801136	-	NGO0716	-	hypothetical protein
664	 57.95	0	717487..718473	+	328	59801137	glk	NGO0717	-	glucokinase
665	 56.42	0	718522..719370	+	282	59801138	-	NGO0718	-	RpiR family transcriptional regulator
666	 55.19	0	719596..721242	+	548	59801139	pgi	NGO0719	-	glucose-6-phosphate isomerase
667	 47.06	0	721256..721459	+	67	59801140	-	NGO0720	-	putative phage associated protein
668	 50.20	0	721459..722472	+	337	59801141	-	NGO0721	-	putative phage associated protein
669	 51.06	0	722517..722657	+	46	59801142	-	NGO0722	-	putative phage associated protein
670	 54.62	0	722896..723144	+	82	59801143	-	NGO0723	-	putative phage associated protein
671	 52.85	0	723086..723208	+	40	59801144	-	NGO0724	-	putative phage associated protein
672	 55.34	0	723158..723466	-	102	59801145	-	NGO0725	-	putative phage associated protein
673	 62.11	+1	726767..727315	-	182	59801146	-	NGO0727	-	putative baseplate protein, putative phage associated protein
674	 60.47	+1	727336..728238	-	300	59801147	-	NGO0728	-	putative phage associated protein
675	 57.28	0	728344..728556	-	70	59801148	-	NGO0729	-	putative phage associated protein
676	 54.74	0	728611..729264	-	217	59801149	-	NGO0730	-	IS1016 transposase
677	 54.74	0	729286..729570	-	94	59801150	-	NGO0731	-	putative phage associated protein
678	 49.62	0	729607..729870	-	87	59801151	-	NGO0732	-	putative phage associated protein
679	 52.69	0	731378..732157	-	259	59801152	-	NGO0734	-	putative oxidoreductase
680	 35.22	-2	732156..732314	+	52	59801153	-	NGO0735	-	hypothetical protein
681	 19.87	-2	732449..732745	-	98	59801154	-	NGO0736	-	hypothetical protein
682	 57.03	0	733057..734115	+	352	59801155	-	NGO0738	-	putative DNA-damage-inducibile protein
683	 53.08	0	734185..736200	-	671	59801156	-	NGO0739	-	putative ATP-dependent DNA helicase
684	 59.22	0	736220..736984	-	254	59801157	aroD	NGO0740	-	3-dehydroquinate dehydratase
685	 56.16	0	737184..738230	+	348	59801158	recA	NGO0741	-	recombinase A
686	 53.87	0	738883..739218	-	111	59801159	-	NGO0742	-	hypothetical protein
687	 59.23	0	739299..741422	-	707	59801160	-	NGO0743	-	DNA polymerase III subunits gamma and tau
688	 58.78	0	741517..743493	-	658	59801161	mutL	NGO0744	-	DNA mismatch repair protein
689	 42.47	-1	743637..743822	+	61	59801162	-	NGO0745	-	hypothetical protein
690	 54.56	0	743833..744501	+	222	59801163	-	NGO0746	-	putative O-methyltransferase
691	 53.78	0	744501..745214	+	237	59801164	-	NGO0747	-	hypothetical protein
692	 56.58	0	745262..745747	+	161	59801165	-	NGO0748	-	putative phosphoribosylaminoimidazole carboxylase catalytic subunit
693	 45.65	-1	747669..748577	+	302	59801166	-	NGO0751	-	hypothetical protein
694	 55.86	0	748733..749389	-	218	59801167	-	NGO0752	-	NarL/NarP
695	 53.73	0	749386..751155	-	589	59801168	-	NGO0753	-	NarX/NarQ
696	 53.33	0	751362..751976	+	204	59801169	-	NGO0754	-	putative molybdopterin-guanine dinucleotide biosynthesis protein
697	 53.72	0	752139..752756	+	205	161572975	-	NGO0755	-	riboflavin synthase subunit alpha
698	 54.40	0	752764..753627	+	287	59801171	-	NGO0756	-	hypothetical protein
699	 54.25	0	753640..754074	-	144	59801172	-	NGO0757	-	hypothetical protein
700	 54.55	0	754220..754912	+	230	59801173	-	NGO0758	-	putative ribulose-phosphate 3-epimerase
701	 49.66	0	755001..755147	-	48	59801174	-	NGO0759	-	hypothetical protein
702	 61.05	+1	755151..756182	-	343	59801175	ruvB	NGO0760	-	Holliday junction DNA helicase B
703	 53.07	0	756266..756574	-	102	59801176	-	NGO0761	-	hypothetical protein
704	 55.32	0	756606..756746	+	46	59801177	-	NGO0762	-	hypothetical protein
705	 59.77	+1	756992..758224	-	410	59801178	cca	NGO0763	-	multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase
706	 52.85	0	758303..759931	-	542	59801179	-	NGO0764	-	putative ABC-transporter, ATP-binding protein
707	 53.33	0	760081..760455	+	124	59801180	-	NGO0765	-	hypothetical protein
708	 52.63	0	760504..762042	+	512	59801181	-	NGO0766	-	putative peptidyl-prolyl cis-trans isomerase
709	 54.85	0	762109..762726	+	205	59801182	-	NGO0767	-	putative recombination protein
710	 45.63	-1	762907..763158	-	83	59801183	-	NGO0768	-	hypothetical protein
711	 55.37	0	763287..764534	+	415	59801184	-	NGO0769	-	LolC
712	 57.90	0	764527..765222	+	231	59801185	-	NGO0770	-	hypothetical protein
713	 56.76	0	765289..767034	+	581	59801186	-	NGO0771	-	putative exodeoxyribonuclease V alpha subunit
714	 46.71	0	767722..768723	+	333	59801187	-	NGO0773	-	Irg1
715	 52.46	0	768871..769440	+	189	59801188	-	NGO0774	-	hypothetical protein
716	 52.86	0	769563..772025	+	820	59801189	-	NGO0775	-	hypothetical protein
717	 48.05	0	772015..772605	-	196	59801190	-	NGO0776	-	hypothetical protein
718	 52.59	0	772207..772476	+	89	59801191	-	NGO0777	-	DbhA
719	 52.41	0	772652..773086	-	144	59801192	-	NGO0778	-	hypothetical protein
720	 55.89	0	773079..774386	-	435	59801193	-	NGO0779	-	homoserine dehydrogenase
721	 51.61	0	774582..774953	+	123	59801194	-	NGO0780	-	hypothetical protein
722	 50.70	0	775030..776952	+	640	59801195	-	NGO0781	-	putative ABC transporter, ATP-binding protein
723	 45.38	-1	776978..777334	+	118	59801196	-	NGO0782	-	hypothetical protein
724	 47.17	0	777425..777937	+	170	59801197	-	NGO0783	-	hypothetical protein
725	 42.94	-1	777985..778161	+	58	59801198	-	NGO0784	-	hypothetical protein
726	 52.01	0	778408..778830	+	140	59801199	-	NGO0785	-	hypothetical protein
727	 53.03	0	778867..779526	-	219	59801200	-	NGO0786	-	uracil-DNA glycosylase
728	 52.94	0	779607..780014	+	135	59801201	-	NGO0787	-	hypothetical protein
729	 53.16	0	780029..780976	+	315	59801202	-	NGO0788	-	GNA1220
730	 52.38	0	781083..782153	-	356	59801203	-	NGO0789	-	hypothetical protein
731	 47.80	0	782211..782369	-	52	59801204	-	NGO0790	-	hypothetical protein
732	 51.45	0	782338..782613	+	91	59801205	-	NGO0791	-	hypothetical protein
733	 55.15	0	782666..783238	+	190	59801206	-	NGO0792	-	putative lipoate-protein ligase
52.66	MEAN

6.57	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.