IslandPathversion 1.0

IslandPath Analysis: Neisseria gonorrhoeae FA 1090



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.66 STD DEV: 6.57
Neisseria gonorrhoeae FA 1090, complete genome - 1..2153922
2002 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
594	 37.87	-2	627312..630086	-	924	59801067	-	NGO0640	-	RmsR
595	 37.65	-2	630076..632346	-	756	59801068	-	NGO0641	-	putative type III restriction/modification system modification methylase
596	 56.68	0	632563..633483	-	306	59801069	-	NGO0642	-	putative tRNA pseudouridine synthase B
597	 39.19	-2	633541..634086	-	181	59801070	-	NGO0643	-	hypothetical protein
598	 53.23	0	634076..634447	-	123	59801071	rbfA	NGO0644	-	ribosome-binding factor A
599	 54.06	0	634630..635874	+	414	59801072	clpX	NGO0645	-	ATP-dependent protease ATP-binding subunit
600	 57.54	0	635981..637174	-	397	59801073	argD	NGO0646	-	bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein
601	 55.09	0	637578..638078	+	166	59801074	-	NGO0647	-	hypothetical protein
602	 61.44	+1	638163..638717	+	184	59801075	-	NGO0648	-	hypothetical protein
603	 48.76	0	638731..638931	+	66	59801076	-	NGO0649	-	hypothetical protein
604	 55.58	0	639282..640670	-	462	59801077	-	NGO0650	-	putative ATP-dependent RNA helicase
605	 51.64	0	640881..641945	+	354	59801078	-	NGO0651	-	hypothetical protein
606	 56.46	0	641997..642329	-	110	59801079	-	NGO0652	-	putative thioredoxin I
607	 53.80	0	642627..643100	+	157	59801080	-	NGO0653	-	hypothetical protein
608	 57.79	0	643171..643992	-	273	59801081	-	NGO0654	-	putative NH(3)-dependent NAD synthetase
609	 58.41	0	644189..645544	+	451	59801082	xseA	NGO0655	-	exodeoxyribonuclease VII large subunit
610	 57.39	0	646046..647587	+	513	59801083	-	NGO0656	-	putative membrane transporter
611	 58.59	0	647646..648698	-	350	59801084	-	NGO0657	-	hypothetical protein
612	 58.29	0	648916..649548	+	210	59801085	-	NGO0658	-	pyridoxamine 5'-phosphate oxidase
613	 56.18	0	649678..650688	-	336	59801086	-	NGO0659	-	putative iron/sulphur-binding oxidoreductase
614	 54.86	0	650780..652210	-	476	59801087	gatB	NGO0660	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
615	 51.23	0	652253..653185	-	310	59801088	-	NGO0661	-	hypothetical protein
616	 58.30	0	653182..654627	-	481	59801089	-	NGO0662	-	putative Glu-tRNA(Gln) amidotransferase subunit
617	 53.95	0	654690..654980	-	96	59801090	gatC	NGO0663	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
618	 57.03	0	655130..655783	+	217	59801091	-	NGO0664	-	hypothetical protein
619	 57.89	0	655788..657131	+	447	59801092	-	NGO0665	-	putative aldehyde dehydrogenase
620	 49.42	0	657180..657608	-	142	59801093	-	NGO0666	-	hypothetical protein
621	 41.40	-1	657753..657938	-	61	59801094	-	NGO0667	-	hypothetical protein
622	 55.61	0	657954..659210	-	418	59801095	-	NGO0668	-	putative SUN-family protein
623	 54.83	0	659246..660115	-	289	59801096	-	NGO0669	-	hypothetical protein
624	 58.58	0	660156..660971	-	271	59801097	-	NGO0670	-	putative methylase family protein
625	 52.42	0	661215..662000	+	261	59801098	-	NGO0671	-	hypothetical protein
626	 43.23	-1	662118..662309	+	63	59801099	-	NGO0672	-	hypothetical protein
627	 55.50	0	662306..662959	+	217	59801100	-	NGO0673	-	IS1016 transposase
628	 55.00	0	662987..664057	-	356	59801101	-	NGO0674	-	3-isopropylmalate dehydrogenase
629	 37.16	-2	664091..664822	-	243	59801102	-	NGO0675	-	putative type II restriction endonuclease NlaIV
630	 40.02	-1	664838..666109	-	423	59801103	-	NGO0676	-	putative DNA modification methylase (N.MgoV)
631	 54.36	0	666276..666917	-	213	59801104	leuD	NGO0677	-	isopropylmalate isomerase small subunit
632	 57.65	0	666979..667233	-	84	59801105	-	NGO0678	-	hypothetical protein
633	 58.23	0	667328..668737	-	469	59801106	-	NGO0679	-	isopropylmalate isomerase large subunit
634	 54.10	0	669169..670338	+	389	59801107	-	NGO0680	-	hypothetical protein
635	 56.34	0	670461..671138	+	225	59801108	radC	NGO0681	-	DNA repair protein RadC
636	 53.31	0	671211..671936	+	241	59801109	-	NGO0682	-	hypothetical protein
637	 56.83	0	672088..673368	+	426	59801110	-	NGO0683	-	hypothetical protein
638	 57.39	0	673443..674552	+	369	59801111	-	NGO0684	-	putative GTP binding protein
639	 59.10	0	674549..677005	+	818	59801112	-	NGO0685	-	putative P-type cation-transporting ATPase
640	 30.72	-2	677179..677331	+	50	59801113	-	NGO0686	-	hypothetical protein
641	 52.77	0	677673..678449	-	258	59801114	-	NGO0687	-	putative ferredoxin-NADP reductase
642	 56.10	0	678637..679431	-	264	59801115	-	NGO0688	-	hypothetical protein
643	 54.47	0	679478..680887	-	469	59801116	-	NGO0689	-	threonine synthase
644	 57.18	0	680960..681328	-	122	59801117	-	NGO0690	-	hypothetical protein
645	 45.93	-1	684226..684741	-	171	59801118	-	NGO0693	-	hypothetical protein
646	 41.58	-1	684728..687346	-	872	59801119	-	NGO0694	-	hypothetical protein
647	 58.20	0	688651..689961	+	436	59801120	-	NGO0696	-	recombination factor protein RarA
648	 49.42	0	690060..693086	+	1008	59801121	-	NGO0697	-	putative type I restriction enzyme
649	 44.87	-1	693136..693369	+	77	59801122	-	NGO0698	-	hypothetical protein
650	 37.07	-2	693416..694618	+	400	59801123	-	NGO0699	-	hypothetical protein
651	 27.81	-2	694611..695171	+	186	59801124	-	NGO0700	-	hypothetical protein
652	 27.05	-2	695182..696024	+	280	59801125	-	NGO0701	-	hypothetical protein
653	 44.26	-1	696091..697692	+	533	59801126	-	NGO0702	-	hypothetical protein
654	 41.85	-1	697719..697988	-	89	59801127	-	NGO0703	-	hypothetical protein
655	 58.79	0	698003..699094	-	363	59801128	-	NGO0704	-	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein
656	 39.84	-1	708430..708798	+	122	59801129	-	NGO0709	-	hypothetical protein
657	 54.10	0	709174..710223	-	349	59801130	-	NGO0710	-	putative adenine glycosylase
658	 52.21	0	710377..711393	+	338	59801131	-	NGO0711	-	putative alcohol dehydrogenase
659	 41.94	-1	711637..711822	+	61	59801132	-	NGO0712	-	hypothetical protein
660	 60.72	+1	712011..712649	-	212	59801133	-	NGO0713	-	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase
661	 58.01	0	712859..714694	-	611	59801134	-	NGO0714	-	phosphogluconate dehydratase
662	 53.04	0	715214..716659	+	481	59801135	-	NGO0715	-	glucose-6-phosphate 1-dehydrogenase
663	 53.02	0	716811..717506	+	231	59801136	-	NGO0716	-	hypothetical protein
664	 57.95	0	717487..718473	+	328	59801137	glk	NGO0717	-	glucokinase
665	 56.42	0	718522..719370	+	282	59801138	-	NGO0718	-	RpiR family transcriptional regulator
666	 55.19	0	719596..721242	+	548	59801139	pgi	NGO0719	-	glucose-6-phosphate isomerase
667	 47.06	0	721256..721459	+	67	59801140	-	NGO0720	-	putative phage associated protein
668	 50.20	0	721459..722472	+	337	59801141	-	NGO0721	-	putative phage associated protein
669	 51.06	0	722517..722657	+	46	59801142	-	NGO0722	-	putative phage associated protein
670	 54.62	0	722896..723144	+	82	59801143	-	NGO0723	-	putative phage associated protein
671	 52.85	0	723086..723208	+	40	59801144	-	NGO0724	-	putative phage associated protein
672	 55.34	0	723158..723466	-	102	59801145	-	NGO0725	-	putative phage associated protein
673	 62.11	+1	726767..727315	-	182	59801146	-	NGO0727	-	putative baseplate protein, putative phage associated protein
674	 60.47	+1	727336..728238	-	300	59801147	-	NGO0728	-	putative phage associated protein
675	 57.28	0	728344..728556	-	70	59801148	-	NGO0729	-	putative phage associated protein
676	 54.74	0	728611..729264	-	217	59801149	-	NGO0730	-	IS1016 transposase
677	 54.74	0	729286..729570	-	94	59801150	-	NGO0731	-	putative phage associated protein
678	 49.62	0	729607..729870	-	87	59801151	-	NGO0732	-	putative phage associated protein
679	 52.69	0	731378..732157	-	259	59801152	-	NGO0734	-	putative oxidoreductase
680	 35.22	-2	732156..732314	+	52	59801153	-	NGO0735	-	hypothetical protein
681	 19.87	-2	732449..732745	-	98	59801154	-	NGO0736	-	hypothetical protein
682	 57.03	0	733057..734115	+	352	59801155	-	NGO0738	-	putative DNA-damage-inducibile protein
683	 53.08	0	734185..736200	-	671	59801156	-	NGO0739	-	putative ATP-dependent DNA helicase
684	 59.22	0	736220..736984	-	254	59801157	aroD	NGO0740	-	3-dehydroquinate dehydratase
685	 56.16	0	737184..738230	+	348	59801158	recA	NGO0741	-	recombinase A
686	 53.87	0	738883..739218	-	111	59801159	-	NGO0742	-	hypothetical protein
687	 59.23	0	739299..741422	-	707	59801160	-	NGO0743	-	DNA polymerase III subunits gamma and tau
688	 58.78	0	741517..743493	-	658	59801161	mutL	NGO0744	-	DNA mismatch repair protein
689	 42.47	-1	743637..743822	+	61	59801162	-	NGO0745	-	hypothetical protein
690	 54.56	0	743833..744501	+	222	59801163	-	NGO0746	-	putative O-methyltransferase
691	 53.78	0	744501..745214	+	237	59801164	-	NGO0747	-	hypothetical protein
692	 56.58	0	745262..745747	+	161	59801165	-	NGO0748	-	putative phosphoribosylaminoimidazole carboxylase catalytic subunit
693	 45.65	-1	747669..748577	+	302	59801166	-	NGO0751	-	hypothetical protein
52.66	MEAN

6.57	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.