IslandPathversion 1.0

IslandPath Analysis: Neisseria gonorrhoeae FA 1090



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.66 STD DEV: 6.57
Neisseria gonorrhoeae FA 1090, complete genome - 1..2153922
2002 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
561	 49.09	0	592048..593418	-	456	59801034	-	NGO0606	-	putative sodium-dependent transport protein
562	 51.23	0	593892..594584	-	230	59801035	-	NGO0607	-	hypothetical protein
563	 57.06	0	594652..596628	-	658	59801036	-	NGO0608	-	putative murein transglycosylase / nitrite reductase transcriptional regulator
564	 55.11	0	596807..597472	+	221	59801037	-	NGO0609	-	hypothetical protein
565	 55.43	0	597525..598352	+	275	59801038	-	NGO0610	-	formamidopyrimidine-DNA glycosylase
566	 55.47	0	598440..599207	+	255	59801039	-	NGO0611	-	1-acyl-SN-glycerol-3-phosphate acyltransferase
567	 54.17	0	599470..599781	-	103	59801040	-	NGO0613	-	hypothetical protein
568	 52.59	0	600312..602591	+	759	59801041	-	NGO0614	-	ribonucleotide-diphosphate reductase subunit alpha
569	 47.71	0	602904..604037	+	377	161572976	nrdB	NGO0615	-	ribonucleotide-diphosphate reductase subunit beta
570	 55.33	0	604158..604448	+	96	59801043	-	NGO6151	-	hypothetical protein
571	 48.75	0	604489..604767	-	92	59801044	-	NGO0616	-	hypothetical protein
572	 53.85	0	604935..606221	-	428	59801045	eno	NGO0617	-	phosphopyruvate hydratase
573	 54.20	0	606268..606708	-	146	59801046	-	NGO0618	-	hypothetical protein
574	 51.60	0	606723..607565	-	280	59801047	-	NGO0619	-	2-dehydro-3-deoxyphosphooctonate aldolase
575	 51.82	0	607587..607970	-	127	59801048	-	NGO0620	-	aspartate alpha-decarboxylase
576	 47.85	0	608132..608434	-	100	59801049	-	NGO0621	-	hypothetical protein
577	 47.50	0	608468..608587	-	39	59801050	-	NGO0622	-	hypothetical protein
578	 57.60	0	608660..612364	-	1234	59801051	-	NGO0623	-	putative transcription-repair coupling factor
579	 55.60	0	612423..613976	+	517	59801052	-	NGO0624	-	putative oxidoreductase
580	 56.63	0	613967..614215	+	82	59801053	-	NGO0625	-	hypothetical protein
581	 54.58	0	614124..615215	+	363	59801054	-	NGO0626	-	putative murein hydrolase
582	 56.40	0	615338..617344	-	668	59801055	-	NGO0627	-	Gcr
583	 55.05	0	617567..618220	+	217	59801056	-	NGO0628	-	IS1016 transposase
584	 54.85	0	618439..621189	-	916	59801057	-	NGO0629	-	DNA gyrase subunit A
585	 53.39	0	621287..621640	-	117	59801058	-	NGO0630	-	putative chaperone protein HscB
586	 44.67	-1	621689..621838	+	49	59801059	-	NGO0631	-	hypothetical protein
587	 50.16	0	622050..622370	-	106	59801060	-	NGO0632	-	hypothetical protein
588	 53.49	0	622457..622843	-	128	59801061	-	NGO0633	-	scaffold protein
589	 25.09	-2	623656..623946	-	96	59801062	-	NGO0635	-	hypothetical protein
590	 57.04	0	623952..625166	-	404	59801063	-	NGO0636	-	putative NifS-like aminotransferase
591	 57.72	0	625195..625641	-	148	59801064	-	NGO0637	-	hypothetical protein
592	 41.56	-1	625640..625870	+	76	59801065	-	NGO0638	-	hypothetical protein
593	 53.03	0	625991..627163	+	390	59801066	-	NGO0639	-	putative L-lactate dehydrogenase
594	 37.87	-2	627312..630086	-	924	59801067	-	NGO0640	-	RmsR
595	 37.65	-2	630076..632346	-	756	59801068	-	NGO0641	-	putative type III restriction/modification system modification methylase
596	 56.68	0	632563..633483	-	306	59801069	-	NGO0642	-	putative tRNA pseudouridine synthase B
597	 39.19	-2	633541..634086	-	181	59801070	-	NGO0643	-	hypothetical protein
598	 53.23	0	634076..634447	-	123	59801071	rbfA	NGO0644	-	ribosome-binding factor A
599	 54.06	0	634630..635874	+	414	59801072	clpX	NGO0645	-	ATP-dependent protease ATP-binding subunit
600	 57.54	0	635981..637174	-	397	59801073	argD	NGO0646	-	bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein
601	 55.09	0	637578..638078	+	166	59801074	-	NGO0647	-	hypothetical protein
602	 61.44	+1	638163..638717	+	184	59801075	-	NGO0648	-	hypothetical protein
603	 48.76	0	638731..638931	+	66	59801076	-	NGO0649	-	hypothetical protein
604	 55.58	0	639282..640670	-	462	59801077	-	NGO0650	-	putative ATP-dependent RNA helicase
605	 51.64	0	640881..641945	+	354	59801078	-	NGO0651	-	hypothetical protein
606	 56.46	0	641997..642329	-	110	59801079	-	NGO0652	-	putative thioredoxin I
607	 53.80	0	642627..643100	+	157	59801080	-	NGO0653	-	hypothetical protein
608	 57.79	0	643171..643992	-	273	59801081	-	NGO0654	-	putative NH(3)-dependent NAD synthetase
609	 58.41	0	644189..645544	+	451	59801082	xseA	NGO0655	-	exodeoxyribonuclease VII large subunit
610	 57.39	0	646046..647587	+	513	59801083	-	NGO0656	-	putative membrane transporter
611	 58.59	0	647646..648698	-	350	59801084	-	NGO0657	-	hypothetical protein
612	 58.29	0	648916..649548	+	210	59801085	-	NGO0658	-	pyridoxamine 5'-phosphate oxidase
613	 56.18	0	649678..650688	-	336	59801086	-	NGO0659	-	putative iron/sulphur-binding oxidoreductase
614	 54.86	0	650780..652210	-	476	59801087	gatB	NGO0660	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
615	 51.23	0	652253..653185	-	310	59801088	-	NGO0661	-	hypothetical protein
616	 58.30	0	653182..654627	-	481	59801089	-	NGO0662	-	putative Glu-tRNA(Gln) amidotransferase subunit
617	 53.95	0	654690..654980	-	96	59801090	gatC	NGO0663	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
618	 57.03	0	655130..655783	+	217	59801091	-	NGO0664	-	hypothetical protein
619	 57.89	0	655788..657131	+	447	59801092	-	NGO0665	-	putative aldehyde dehydrogenase
620	 49.42	0	657180..657608	-	142	59801093	-	NGO0666	-	hypothetical protein
621	 41.40	-1	657753..657938	-	61	59801094	-	NGO0667	-	hypothetical protein
622	 55.61	0	657954..659210	-	418	59801095	-	NGO0668	-	putative SUN-family protein
623	 54.83	0	659246..660115	-	289	59801096	-	NGO0669	-	hypothetical protein
624	 58.58	0	660156..660971	-	271	59801097	-	NGO0670	-	putative methylase family protein
625	 52.42	0	661215..662000	+	261	59801098	-	NGO0671	-	hypothetical protein
626	 43.23	-1	662118..662309	+	63	59801099	-	NGO0672	-	hypothetical protein
627	 55.50	0	662306..662959	+	217	59801100	-	NGO0673	-	IS1016 transposase
628	 55.00	0	662987..664057	-	356	59801101	-	NGO0674	-	3-isopropylmalate dehydrogenase
629	 37.16	-2	664091..664822	-	243	59801102	-	NGO0675	-	putative type II restriction endonuclease NlaIV
630	 40.02	-1	664838..666109	-	423	59801103	-	NGO0676	-	putative DNA modification methylase (N.MgoV)
631	 54.36	0	666276..666917	-	213	59801104	leuD	NGO0677	-	isopropylmalate isomerase small subunit
632	 57.65	0	666979..667233	-	84	59801105	-	NGO0678	-	hypothetical protein
633	 58.23	0	667328..668737	-	469	59801106	-	NGO0679	-	isopropylmalate isomerase large subunit
634	 54.10	0	669169..670338	+	389	59801107	-	NGO0680	-	hypothetical protein
635	 56.34	0	670461..671138	+	225	59801108	radC	NGO0681	-	DNA repair protein RadC
636	 53.31	0	671211..671936	+	241	59801109	-	NGO0682	-	hypothetical protein
637	 56.83	0	672088..673368	+	426	59801110	-	NGO0683	-	hypothetical protein
638	 57.39	0	673443..674552	+	369	59801111	-	NGO0684	-	putative GTP binding protein
639	 59.10	0	674549..677005	+	818	59801112	-	NGO0685	-	putative P-type cation-transporting ATPase
640	 30.72	-2	677179..677331	+	50	59801113	-	NGO0686	-	hypothetical protein
641	 52.77	0	677673..678449	-	258	59801114	-	NGO0687	-	putative ferredoxin-NADP reductase
642	 56.10	0	678637..679431	-	264	59801115	-	NGO0688	-	hypothetical protein
643	 54.47	0	679478..680887	-	469	59801116	-	NGO0689	-	threonine synthase
644	 57.18	0	680960..681328	-	122	59801117	-	NGO0690	-	hypothetical protein
645	 45.93	-1	684226..684741	-	171	59801118	-	NGO0693	-	hypothetical protein
646	 41.58	-1	684728..687346	-	872	59801119	-	NGO0694	-	hypothetical protein
647	 58.20	0	688651..689961	+	436	59801120	-	NGO0696	-	recombination factor protein RarA
648	 49.42	0	690060..693086	+	1008	59801121	-	NGO0697	-	putative type I restriction enzyme
649	 44.87	-1	693136..693369	+	77	59801122	-	NGO0698	-	hypothetical protein
650	 37.07	-2	693416..694618	+	400	59801123	-	NGO0699	-	hypothetical protein
651	 27.81	-2	694611..695171	+	186	59801124	-	NGO0700	-	hypothetical protein
652	 27.05	-2	695182..696024	+	280	59801125	-	NGO0701	-	hypothetical protein
653	 44.26	-1	696091..697692	+	533	59801126	-	NGO0702	-	hypothetical protein
654	 41.85	-1	697719..697988	-	89	59801127	-	NGO0703	-	hypothetical protein
655	 58.79	0	698003..699094	-	363	59801128	-	NGO0704	-	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein
656	 39.84	-1	708430..708798	+	122	59801129	-	NGO0709	-	hypothetical protein
657	 54.10	0	709174..710223	-	349	59801130	-	NGO0710	-	putative adenine glycosylase
658	 52.21	0	710377..711393	+	338	59801131	-	NGO0711	-	putative alcohol dehydrogenase
659	 41.94	-1	711637..711822	+	61	59801132	-	NGO0712	-	hypothetical protein
660	 60.72	+1	712011..712649	-	212	59801133	-	NGO0713	-	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase
52.66	MEAN

6.57	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.