IslandPath Analysis: Neisseria gonorrhoeae FA 1090



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.66   STD DEV: 6.57
Neisseria gonorrhoeae FA 1090, complete genome - 1..2153922
2002 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
9	 62.69	+1	12107..12307	-	66	59800482	-	NGO0010	-	hypothetical protein
10	 53.21	0	12417..12728	-	103	59800483	-	NGO0011	-	hypothetical protein
11	 38.60	-2	13341..13625	+	94	59800484	-	NGO0015	-	hypothetical protein
12	 52.14	0	14081..14431	-	116	59800485	secG	NGO0016	-	preprotein translocase subunit SecG
13	 55.81	0	14438..15211	-	257	59800486	tpiA	NGO0017	-	triosephosphate isomerase
14	 55.68	0	15370..15897	+	175	59800487	-	NGO0018	-	hypothetical protein
15	 53.88	0	16000..16656	+	218	59800488	-	NGO0019	-	putative protein-L-isoaspartate O-methyltransferase
16	 55.86	0	16737..17060	+	107	59800489	-	NGO0020	-	hypothetical protein
17	 62.17	+1	17323..19500	-	725	59800490	-	NGO0021	-	putative TonB-dependent receptor protein, iron related
18	 59.88	+1	19763..20086	-	107	59800491	-	NGO0022	-	hypothetical protein
19	 61.83	+1	20119..21090	-	323	59800492	-	NGO0023	-	putative ABC transporter, periplasmic binding protein,iron related
20	 44.24	-1	21087..21251	-	54	59800493	-	NGO0024	-	hypothetical protein
21	 61.44	+1	21326..22282	+	318	59800494	-	NGO0025	-	AraC family transcriptional regulator
22	 57.69	0	22395..24410	-	671	59800495	-	NGO0026	-	putative prolyl endopeptidase
23	 63.31	+1	24506..25816	-	436	59800496	-	NGO0027	-	N-acetylglutamate synthase
24	 56.18	0	25813..26241	-	142	59800497	-	NGO0028	-	hypothetical protein
25	 55.76	0	26309..26950	-	213	59800498	pyrE	NGO0029	-	orotate phosphoribosyltransferase
26	 63.28	+1	27012..27749	-	245	59800499	-	NGO0030	-	hypothetical protein
27	 60.32	+1	27743..28183	-	146	59800500	-	NGO0031	-	putative acetyltransferase
28	 62.24	+1	28180..28857	-	225	59800501	-	NGO0032	-	hypothetical protein
29	 53.96	0	28996..29853	-	285	59800502	-	NGO0033	-	hypothetical protein
30	 57.09	0	29992..31056	-	354	59800503	-	NGO0034	-	fructose-1,6-bisphosphate aldolase
31	 62.20	+1	31250..32167	+	305	59800504	-	NGO0035	-	putative site-specific recombinase
32	 59.20	0	32252..34165	+	637	59800505	-	NGO0036	-	1-deoxy-D-xylulose-5-phosphate synthase
33	 56.06	0	34412..35740	-	442	59800506	-	NGO0037	-	hypothetical protein
34	 50.56	0	36107..36460	+	117	59800507	-	NGO0039	-	hypothetical protein
35	 59.02	0	36524..37804	+	426	59800508	-	NGO0040	-	glutamate-1-semialdehyde aminotransferase
36	 53.72	0	39110..39673	-	187	59800509	-	NGO0042	-	oligoribonuclease
37	 60.59	+1	39691..40578	-	295	59800510	prmA	NGO0043	-	ribosomal protein L11 methyltransferase
38	 58.44	0	40682..42043	-	453	59800511	-	NGO0044	-	acetyl-CoA carboxylase, biotin carboxylase
39	 58.87	0	42157..42618	-	153	59800512	-	NGO0045	-	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
40	 48.06	0	42600..42857	-	85	59800513	-	NGO0046	-	hypothetical protein
41	 57.16	0	42974..44014	+	346	59800514	queA	NGO0047	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
42	 57.25	0	44215..47430	-	1071	59800515	carB	NGO0048	-	carbamoyl phosphate synthase large subunit
43	 27.34	-2	47441..47974	-	177	59800516	-	NGO0049	-	hypothetical protein
44	 54.36	0	49539..49928	-	129	59800517	-	NGO0050	-	hypothetical protein
45	 57.32	0	50524..51657	-	377	59800518	-	NGO0053	-	carbamoyl phosphate synthase small subunit
46	 46.54	0	51927..52244	+	105	59800519	-	NGO0054	-	hypothetical protein
47	 52.48	0	52527..55670	-	1047	59800520	-	NGO0055	-	pilus-associated protein
48	 60.19	+1	57122..58201	-	359	59800521	-	NGO0056	-	putative atpase
49	 57.25	0	58575..59084	+	169	59800522	-	NGO0057	-	putative thioredoxin
50	 52.38	0	59488..59865	+	125	59800523	-	NGO0058	-	MarR family transcriptional regulator
51	 55.09	0	59981..60481	+	166	59800524	-	NGO0059	-	putative flavoprotein oxidoreductase
52	 60.63	+1	60497..61192	+	231	59800525	-	NGO0060	-	putative sugar-phosphate transferase
53	 56.53	0	61831..63507	+	558	59800526	-	NGO0062	-	formate--tetrahydrofolate ligase
54	 56.59	0	63621..64712	+	363	59800527	-	NGO0063	-	translation-associated GTPase
55	 52.50	0	64750..64989	+	79	59800528	-	NGO0064	-	hypothetical protein
56	 53.97	0	64986..66860	+	624	59800529	-	NGO0065	-	putative lipo-oligosaccharide acyltransferase
57	 57.10	0	66922..68217	+	431	59800530	-	NGO0066	-	putative tyrosyl-tRNA synthase
58	 57.60	0	70214..71173	+	319	59800531	-	NGO0068	-	bifunctional riboflavin kinase/FMN adenylyltransferase
59	 55.34	0	71315..74104	+	929	59800532	ileS	NGO0069	-	isoleucyl-tRNA synthetase
60	 52.38	0	74783..75580	-	265	59800533	-	NGO0070	-	outer membrane opacity protein B
61	 52.32	0	76565..77059	+	164	59800534	lspA	NGO0071	-	lipoprotein signal peptidase
62	 58.20	0	77089..78057	+	322	59800535	ispH	NGO0072	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
63	 62.88	+1	78813..79472	-	219	59800536	-	NGO0073	-	putative phosphatase
64	 55.14	0	80406..80726	+	106	59800537	-	NGO0076	-	hypothetical protein
65	 59.29	+1	80714..81337	+	207	59800538	-	NGO0077	-	hypothetical protein
66	 57.61	0	81989..85423	-	1144	59800539	-	NGO0078	-	putative DNA polymerase III, alpha subunit
67	 55.13	0	85956..86189	+	77	59800540	-	NGO0079	-	hypothetical protein
68	 60.29	+1	86167..86370	+	67	59800541	-	NGO0080	-	hypothetical protein
69	 59.74	+1	86665..87501	+	278	59800542	-	NGO0081	-	hypothetical protein
70	 57.85	0	87553..88845	-	430	59800543	avtA	NGO0082	-	valine--pyruvate transaminase
71	 57.56	0	88901..90811	-	636	59800544	-	NGO0083	-	pilin glycosylation protein
72	 58.08	0	90859..92034	-	391	59800545	-	NGO0084	-	PglC
73	 57.33	0	92165..93406	-	413	59800546	-	NGO0085	-	PglB
74	 53.21	0	93399..94565	-	388	59800547	-	NGO0086	-	hypothetical protein
75	 56.06	0	94579..95643	-	354	59800548	-	NGO0087	-	hypothetical protein
76	 60.69	+1	95640..97061	-	473	59800549	-	NGO0088	-	hypothetical protein
77	 59.37	+1	97256..98365	-	369	59800550	-	NGO0089	-	putative diaminohydroxyphosphoribosylaminopyrimidine deaminase
78	 62.47	+1	98397..98849	-	150	59800551	-	NGO0090	-	transcriptional regulator NrdR
79	 58.84	0	98878..99720	-	280	59800552	-	NGO0091	-	hypothetical protein
80	 61.39	+1	100459..101538	-	359	59800553	-	NGO0092	-	3-dehydroquinate synthase
81	 57.31	0	101618..102130	-	170	59800554	-	NGO0093	-	shikimate kinase
82	 52.81	0	103398..105569	-	723	59800555	-	NGO0094	-	hypothetical protein
83	 49.63	0	105588..106133	-	181	59800556	-	NGO0095	-	PilP
84	 49.69	0	106151..106798	-	215	59800557	-	NGO0096	-	hypothetical protein
85	 49.50	0	106799..107398	-	199	59800558	-	NGO0097	-	PilN
86	 48.03	0	107401..108516	-	371	59800559	-	NGO0098	-	hypothetical protein
87	 51.06	0	108668..111064	+	798	59800560	-	NGO0099	-	PonA
88	 50.31	0	111184..111819	-	211	59800561	-	NGO0100	-	GTPase EngB
89	 50.80	0	112020..112643	+	207	59800562	-	NGO0101	-	putative cytochrome precursor
90	 50.10	0	112858..114873	+	671	59800563	-	NGO0102	-	putative cytochrome biogenesis protein
91	 52.86	0	114866..116053	+	395	59800564	-	NGO0103	-	putative cytochrome synthesis protein
92	 56.90	0	116169..117233	+	354	59800565	-	NGO0104	-	O-sialoglycoprotein endopeptidase
93	 56.26	0	117278..118171	-	297	59800566	-	NGO0105	-	lipid A biosynthesis lauroyl acyltransferase
94	 57.61	0	118517..119686	+	389	161572979	-	NGO0106	-	S-adenosylmethionine synthetase
95	 57.23	0	119751..121160	-	469	59800568	-	NGO0107	-	putative carboxypeptidase, penicillin binding protein
96	 49.79	0	121405..121890	+	161	59800569	-	NGO0108	-	hypothetical protein
97	 52.91	0	121880..122068	+	62	59800570	-	NGO0109	-	hypothetical protein
98	 53.04	0	122259..123572	+	437	59800571	-	NGO0110	-	putative magnesium citrate secondary transporter
99	 56.43	0	124550..125800	+	416	59800572	-	NGO0112	-	putative two-component system sensor kinase
100	 57.50	0	125835..127328	-	497	59800573	-	NGO0113	-	putative ribonuclease G / cytoplasmic axial filament protein
101	 58.91	0	127547..127804	+	85	59800574	-	NGO0114	-	putative glutaredoxin
102	 54.12	0	127801..128310	-	169	59800575	-	NGO0115	-	hypothetical protein
103	 54.95	0	127825..128268	+	147	59800576	-	NGO0116	-	preprotein translocase subunit SecB
104	 58.69	0	128354..130396	+	680	59800577	-	NGO0117	-	hypothetical protein
105	 62.84	+1	130990..132033	-	347	59800578	argC	NGO0118	-	N-acetyl-gamma-glutamyl-phosphate reductase
106	 54.08	0	132030..132323	-	97	59800579	-	NGO0119	-	hypothetical protein
107	 31.01	-2	132347..132475	+	42	59800580	-	NGO0120	-	hypothetical protein
108	 44.24	-1	132575..133729	+	384	59800581	-	NGO0121	-	hypothetical protein
52.66	MEAN

6.57	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.