IslandPathversion 1.0

IslandPath Analysis: Neisseria gonorrhoeae FA 1090



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.66 STD DEV: 6.57
Neisseria gonorrhoeae FA 1090, complete genome - 1..2153922
2002 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
495	 54.95	0	503725..505278	-	517	59800968	-	NGO0530	-	acyl-CoA synthetase
496	 55.13	0	505291..505446	+	51	59800969	-	NGO0531	-	hypothetical protein
497	 62.06	+1	505529..506722	-	397	59800970	-	NGO0532	-	hypothetical protein
498	 56.30	0	506719..507702	-	327	59800971	-	NGO0533	-	hypothetical protein
499	 56.16	0	507713..509149	-	478	59800972	-	NGO0534	-	putative alginate O-acetylation - like protein
500	 53.60	0	510723..511097	+	124	59800973	-	NGO0537	-	hypothetical protein
501	 57.01	0	512905..514002	+	365	59800974	-	NGO0539	-	hypothetical protein
502	 51.54	0	515356..515811	+	151	59800975	-	NGO0541	-	putative low-molecular weight phosphotyrosine protein phosphatase
503	 52.62	0	515888..516364	+	158	59800976	-	NGO0542	-	hypothetical protein
504	 53.18	0	516352..517278	+	308	59800977	-	NGO0543	-	hypothetical protein
505	 54.48	0	517343..517900	+	185	59800978	-	NGO0544	-	putative peptidyl-prolyl cis-trans isomerase A
506	 47.00	0	518016..520079	+	687	59800979	-	NGO0545	-	putative type III restriction-modification system methyltransferase
507	 48.06	0	520169..523108	+	979	59800980	-	NGO0546	-	putative type III restriction-modification system endonuclease protein
508	 53.75	0	523202..524161	-	319	59800981	-	NGO0547	-	hypothetical protein
509	 55.94	0	524253..525119	-	288	59800982	-	NGO0548	-	hypothetical protein
510	 61.71	+1	525151..525513	-	120	59800983	-	NGO0549	-	hypothetical protein
511	 50.00	0	525588..526067	+	159	59800984	-	NGO0550	-	hypothetical protein
512	 55.70	0	526089..526781	+	230	59800985	-	NGO0551	-	putative dnaJ-family protein
513	 51.60	0	526785..527660	+	291	59800986	-	NGO0552	-	hypothetical protein
514	 54.85	0	527868..531488	+	1206	59800987	-	NGO0553	-	putative TonB-dependent receptor
515	 52.68	0	531770..532720	+	316	59800988	-	NGO0554	-	hypothetical protein
516	 57.23	0	532940..534433	+	497	59800989	-	NGO0555	-	hypothetical protein
517	 53.15	0	534501..535898	-	465	59800990	aspA	NGO0556	-	aspartate ammonia-lyase
518	 51.32	0	535924..536112	-	62	59800991	-	NGO0557	-	hypothetical protein
519	 54.55	0	536176..536736	-	186	59800992	-	NGO0558	-	hypothetical protein
520	 55.35	0	536937..537590	+	217	59800993	-	NGO0559	-	IS1016 transposase
521	 46.62	0	540134..541684	+	516	59800994	-	NGO0561	-	hypothetical protein
522	 55.91	0	542108..543892	-	594	59800995	-	NGO0562	-	putative dihydrolipoamide dehydrogenase
523	 34.36	-2	543910..544200	-	96	59800996	-	NGO0563	-	hypothetical protein
524	 55.79	0	544445..546034	-	529	59800997	-	NGO0564	-	dihydrolipoamide acetyltransferase
525	 54.95	0	546184..548847	-	887	59800998	aceE	NGO0565	-	pyruvate dehydrogenase subunit E1
526	 55.69	0	549544..551256	+	570	59800999	-	NGO0566	-	prolyl-tRNA synthetase
527	 52.51	0	551319..551975	+	218	59801000	-	NGO0567	-	putative hydrolase
528	 58.55	0	551985..552440	-	151	59801001	-	NGO0568	-	Holliday junction resolvase-like protein
529	 56.83	0	552433..552981	-	182	59801002	-	NGO0569	-	hypothetical protein
530	 52.41	0	552983..553543	-	186	59801003	-	NGO0570	-	hypothetical protein
531	 52.25	0	553869..555665	+	598	59801004	-	NGO0571	-	hypothetical protein
532	 53.32	0	555792..557267	+	491	59801005	-	NGO0572	-	putative carboxy-terminal processing protease
533	 55.33	0	557597..559624	+	675	59801006	-	NGO0573	-	excinuclease ABC subunit B
534	 53.75	0	559802..560560	-	252	59801007	-	NGO0574	-	Cah
535	 56.62	0	561640..562356	-	238	59801008	trmB	NGO0575	-	tRNA (guanine-N(7))-methyltransferase
536	 54.00	0	564000..565886	-	628	59801009	uvrC	NGO0578	-	excinuclease ABC subunit C
537	 55.60	0	565941..568118	-	725	59801010	-	NGO0579	-	putative transport ATPase
538	 54.68	0	568257..569207	+	316	59801011	-	NGO0580	-	putative thioredoxin reductase
539	 49.59	0	569363..569731	+	122	59801012	rpsF	NGO0581	-	30S ribosomal protein S6
540	 45.87	-1	569732..570034	+	100	59801013	-	NGO0582	-	PriB
541	 44.16	-1	570041..570271	+	76	59801014	rpsR	NGO0583	-	30S ribosomal protein S18
542	 51.66	0	570288..570740	+	150	59801015	rplI	NGO0584	-	50S ribosomal protein L9
543	 55.14	0	571363..572169	-	268	59801016	-	NGO0585	-	hypothetical protein
544	 55.56	0	572170..572916	-	248	59801017	-	NGO0586	-	putative phosphatidylserine synthase
545	 50.92	0	572971..573243	-	90	59801018	-	NGO0587	-	hypothetical protein
546	 52.38	0	573500..573982	+	160	59801019	-	NGO0588	-	hypothetical protein
547	 55.94	0	574029..575240	-	403	59801020	-	NGO0589	-	putative ABC transporter, permease protein
548	 55.06	0	575669..577900	+	743	59801021	-	NGO0590	-	putative ftsK-like cell division/stress response protein
549	 48.63	0	578772..580085	+	437	59801022	tig	NGO0592	-	trigger factor
550	 50.24	0	580181..580795	+	204	59801023	-	NGO0593	-	putative endopeptidase
551	 51.11	0	580849..582114	-	421	59801024	ispG	NGO0594	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
552	 51.44	0	582130..582891	-	253	59801025	-	NGO0595	-	hypothetical protein
553	 50.32	0	582894..583988	-	364	59801026	-	NGO0596	-	hypothetical protein
554	 51.60	0	584132..584443	-	103	59801027	-	NGO0597	-	putative nucleoside diphosphate kinase
555	 52.17	0	584616..585767	-	383	59801028	-	NGO0598	-	hypothetical protein
556	 46.59	0	586297..587043	-	248	59801029	-	NGO0600	-	putative esterase D
557	 39.46	-2	588393..588800	+	135	59801030	-	NGO0602	-	MerR family transcriptional regulator
558	 51.18	0	588996..589292	-	98	59801031	-	NGO0603	-	IhfB
559	 50.89	0	589321..591006	-	561	59801032	rpsA	NGO0604	-	30S ribosomal protein S1
560	 54.79	0	591159..591815	-	218	59801033	-	NGO0605	-	putative cytidylate kinase
561	 49.09	0	592048..593418	-	456	59801034	-	NGO0606	-	putative sodium-dependent transport protein
562	 51.23	0	593892..594584	-	230	59801035	-	NGO0607	-	hypothetical protein
563	 57.06	0	594652..596628	-	658	59801036	-	NGO0608	-	putative murein transglycosylase / nitrite reductase transcriptional regulator
564	 55.11	0	596807..597472	+	221	59801037	-	NGO0609	-	hypothetical protein
565	 55.43	0	597525..598352	+	275	59801038	-	NGO0610	-	formamidopyrimidine-DNA glycosylase
566	 55.47	0	598440..599207	+	255	59801039	-	NGO0611	-	1-acyl-SN-glycerol-3-phosphate acyltransferase
567	 54.17	0	599470..599781	-	103	59801040	-	NGO0613	-	hypothetical protein
568	 52.59	0	600312..602591	+	759	59801041	-	NGO0614	-	ribonucleotide-diphosphate reductase subunit alpha
569	 47.71	0	602904..604037	+	377	161572976	nrdB	NGO0615	-	ribonucleotide-diphosphate reductase subunit beta
570	 55.33	0	604158..604448	+	96	59801043	-	NGO6151	-	hypothetical protein
571	 48.75	0	604489..604767	-	92	59801044	-	NGO0616	-	hypothetical protein
572	 53.85	0	604935..606221	-	428	59801045	eno	NGO0617	-	phosphopyruvate hydratase
573	 54.20	0	606268..606708	-	146	59801046	-	NGO0618	-	hypothetical protein
574	 51.60	0	606723..607565	-	280	59801047	-	NGO0619	-	2-dehydro-3-deoxyphosphooctonate aldolase
575	 51.82	0	607587..607970	-	127	59801048	-	NGO0620	-	aspartate alpha-decarboxylase
576	 47.85	0	608132..608434	-	100	59801049	-	NGO0621	-	hypothetical protein
577	 47.50	0	608468..608587	-	39	59801050	-	NGO0622	-	hypothetical protein
578	 57.60	0	608660..612364	-	1234	59801051	-	NGO0623	-	putative transcription-repair coupling factor
579	 55.60	0	612423..613976	+	517	59801052	-	NGO0624	-	putative oxidoreductase
580	 56.63	0	613967..614215	+	82	59801053	-	NGO0625	-	hypothetical protein
581	 54.58	0	614124..615215	+	363	59801054	-	NGO0626	-	putative murein hydrolase
582	 56.40	0	615338..617344	-	668	59801055	-	NGO0627	-	Gcr
583	 55.05	0	617567..618220	+	217	59801056	-	NGO0628	-	IS1016 transposase
584	 54.85	0	618439..621189	-	916	59801057	-	NGO0629	-	DNA gyrase subunit A
585	 53.39	0	621287..621640	-	117	59801058	-	NGO0630	-	putative chaperone protein HscB
586	 44.67	-1	621689..621838	+	49	59801059	-	NGO0631	-	hypothetical protein
587	 50.16	0	622050..622370	-	106	59801060	-	NGO0632	-	hypothetical protein
588	 53.49	0	622457..622843	-	128	59801061	-	NGO0633	-	scaffold protein
589	 25.09	-2	623656..623946	-	96	59801062	-	NGO0635	-	hypothetical protein
590	 57.04	0	623952..625166	-	404	59801063	-	NGO0636	-	putative NifS-like aminotransferase
591	 57.72	0	625195..625641	-	148	59801064	-	NGO0637	-	hypothetical protein
592	 41.56	-1	625640..625870	+	76	59801065	-	NGO0638	-	hypothetical protein
593	 53.03	0	625991..627163	+	390	59801066	-	NGO0639	-	putative L-lactate dehydrogenase
594	 37.87	-2	627312..630086	-	924	59801067	-	NGO0640	-	RmsR
52.66	MEAN

6.57	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.