IslandPath Analysis: Neisseria gonorrhoeae FA 1090



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.66   STD DEV: 6.57
Neisseria gonorrhoeae FA 1090, complete genome - 1..2153922
2002 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
440	 43.28	-1	462203..462403	-	66	59800913	-	NGO0475	-	putative phage associated protein
441	 43.72	-1	462601..463014	-	137	59800914	-	NGO0476	-	putative phage associated protein
442	 51.83	0	463011..463448	-	145	59800915	-	NGO0477	-	putative phage associated protein
443	 44.06	-1	463489..463926	-	145	59800916	-	NGO0478	-	putative phage associated protein
444	 48.26	0	464039..464755	-	238	59800917	-	NGO0479	-	putative lambda repressor protein cI, putative phage associated protein
445	 49.36	0	465140..465295	+	51	59800918	-	NGO0480	-	putative phage associated protein
446	 49.21	0	465272..465460	-	62	59800919	-	NGO0481	-	putative phage associated protein
447	 52.89	0	465465..465827	-	120	59800920	-	NGO0482	-	putative phage associated protein
448	 46.05	-1	465633..465860	+	75	59800921	-	NGO0483	-	putative phage associated protein
449	 52.11	0	465978..467042	+	354	59800922	-	NGO0484	-	putative phage associated protein
450	 54.63	0	467039..468400	+	453	59800923	-	NGO0485	-	putative replicative DNA helicase, putative phage associated protein
451	 58.95	0	468417..468701	+	94	59800924	-	NGO0486	-	putative phage associated protein
452	 59.60	+1	468740..469234	+	164	59800925	-	NGO0487	-	putative phage associated protein
453	 59.33	+1	469411..469560	+	49	59800926	-	NGO0488	-	putative phage associated protein
454	 64.84	+1	469696..470241	+	181	59800927	-	NGO0489	-	putative phage associated protein
455	 51.28	0	470231..470464	+	77	59800928	-	NGO0490	-	putative phage associated protein
456	 53.19	0	470508..470915	+	135	59800929	-	NGO0491	-	putative phage associated protein
457	 38.66	-2	471138..471644	+	168	59800930	-	NGO0492	-	putative phage associated protein
458	 51.35	0	471965..472186	+	73	59800931	-	NGO0493	-	putative phage associated protein
459	 50.44	0	472479..472928	+	149	59800932	-	NGO0494	-	putative phage associated protein
460	 57.31	0	472990..474411	+	473	59800933	-	NGO0495	-	putative phage associated protein
461	 59.03	0	474408..476555	+	715	59800934	-	NGO0496	-	putative phage associated protein
462	 54.49	0	476623..477780	+	385	59800935	-	NGO0497	-	putative phage associated protein
463	 58.07	0	477821..479320	+	499	59800936	-	NGO0498	-	putative phage associated protein
464	 55.65	0	479327..479689	+	120	59800937	-	NGO0499	-	putative phage associated protein
465	 60.26	+1	479692..480222	+	176	59800938	-	NGO0500	-	putative phage associated protein
466	 58.86	0	480370..480702	+	110	59800939	-	NGO0501	-	putative phage associated protein
467	 58.97	0	480699..481127	+	142	59800940	-	NGO0502	-	putative phage associated protein
468	 53.36	0	481153..481926	+	257	59800941	-	NGO0503	-	putative phage associated protein
469	 57.88	0	481987..482316	+	109	59800942	-	NGO0504	-	putative phage associated protein
470	 58.05	0	482328..482594	+	88	59800943	-	NGO0505	-	putative phage associated protein
471	 57.33	0	482594..483193	+	199	59800944	-	NGO0506	-	putative phage associated protein
472	 60.35	+1	483190..484044	+	284	59800945	-	NGO0507	-	putative phage associated protein
473	 60.42	+1	484046..484477	+	143	59800946	-	NGO0508	-	putative phage associated protein
474	 57.45	0	484505..484786	-	93	59800947	-	NGO0509	-	putative phage associated protein
475	 57.79	0	485026..489171	+	1381	59800948	-	NGO0510	-	putative phage associated protein
476	 54.58	0	489283..489588	+	101	59800949	-	NGO0511	-	hypothetical protein
477	 63.57	+1	489593..490528	-	311	59800950	-	NGO0512	-	putative phage associated protein
478	 60.30	+1	489659..490129	+	156	59800951	-	NGO0513	-	putative phage associated protein
479	 66.97	+2	490130..490462	+	110	59800952	-	NGO0514	-	putative phage associated protein
480	 50.85	0	490591..490824	-	77	59800953	-	NGO0515	-	putative phage associated protein
481	 58.91	0	490832..491179	-	115	59800954	-	NGO0516	-	putative plasmid stable inheritance protein putative phage associated protein
482	 64.14	+1	491179..491415	-	78	59800955	-	NGO0517	-	putative pemI-like protein (PemI), putative phage associated protein
483	 56.85	0	491622..492161	+	179	59800956	-	NGO0518	-	putative phage associated protein
484	 57.68	0	492162..492506	+	114	59800957	-	NGO0519	-	putative phage associated protein
485	 53.85	0	492680..492991	+	103	59800958	-	NGO0520	-	putative phage associated protein
486	 52.00	0	493004..493153	+	49	59800959	-	NGO0521	-	phage associated protein
487	 56.20	0	493183..496230	+	1015	59800960	-	NGO0522	-	putative tail length tape measure protein, putative phage associated protein
488	 48.33	0	496290..496769	-	159	59800961	-	NGO0523	-	putative phage associated protein
489	 53.64	0	497111..498100	-	329	59800962	-	NGO0524	-	putative integrase
490	 49.21	0	498360..498548	-	62	59800963	-	NGO0525	-	hypothetical protein
491	 51.98	0	498789..499823	+	344	59800964	-	NGO0526	-	phosphoribosylaminoimidazole synthetase
492	 33.91	-2	500439..500957	+	172	59800965	-	NGO0527	-	hypothetical protein
493	 55.05	0	500821..501474	+	217	59800966	-	NGO0528	-	IS1016 transposase
494	 52.19	0	501653..503635	+	660	59800967	-	NGO0529	-	putative high-affinity choline transport protein
495	 54.95	0	503725..505278	-	517	59800968	-	NGO0530	-	acyl-CoA synthetase
496	 55.13	0	505291..505446	+	51	59800969	-	NGO0531	-	hypothetical protein
497	 62.06	+1	505529..506722	-	397	59800970	-	NGO0532	-	hypothetical protein
498	 56.30	0	506719..507702	-	327	59800971	-	NGO0533	-	hypothetical protein
499	 56.16	0	507713..509149	-	478	59800972	-	NGO0534	-	putative alginate O-acetylation - like protein
500	 53.60	0	510723..511097	+	124	59800973	-	NGO0537	-	hypothetical protein
501	 57.01	0	512905..514002	+	365	59800974	-	NGO0539	-	hypothetical protein
502	 51.54	0	515356..515811	+	151	59800975	-	NGO0541	-	putative low-molecular weight phosphotyrosine protein phosphatase
503	 52.62	0	515888..516364	+	158	59800976	-	NGO0542	-	hypothetical protein
504	 53.18	0	516352..517278	+	308	59800977	-	NGO0543	-	hypothetical protein
505	 54.48	0	517343..517900	+	185	59800978	-	NGO0544	-	putative peptidyl-prolyl cis-trans isomerase A
506	 47.00	0	518016..520079	+	687	59800979	-	NGO0545	-	putative type III restriction-modification system methyltransferase
507	 48.06	0	520169..523108	+	979	59800980	-	NGO0546	-	putative type III restriction-modification system endonuclease protein
508	 53.75	0	523202..524161	-	319	59800981	-	NGO0547	-	hypothetical protein
509	 55.94	0	524253..525119	-	288	59800982	-	NGO0548	-	hypothetical protein
510	 61.71	+1	525151..525513	-	120	59800983	-	NGO0549	-	hypothetical protein
511	 50.00	0	525588..526067	+	159	59800984	-	NGO0550	-	hypothetical protein
512	 55.70	0	526089..526781	+	230	59800985	-	NGO0551	-	putative dnaJ-family protein
513	 51.60	0	526785..527660	+	291	59800986	-	NGO0552	-	hypothetical protein
514	 54.85	0	527868..531488	+	1206	59800987	-	NGO0553	-	putative TonB-dependent receptor
515	 52.68	0	531770..532720	+	316	59800988	-	NGO0554	-	hypothetical protein
516	 57.23	0	532940..534433	+	497	59800989	-	NGO0555	-	hypothetical protein
517	 53.15	0	534501..535898	-	465	59800990	aspA	NGO0556	-	aspartate ammonia-lyase
518	 51.32	0	535924..536112	-	62	59800991	-	NGO0557	-	hypothetical protein
519	 54.55	0	536176..536736	-	186	59800992	-	NGO0558	-	hypothetical protein
520	 55.35	0	536937..537590	+	217	59800993	-	NGO0559	-	IS1016 transposase
521	 46.62	0	540134..541684	+	516	59800994	-	NGO0561	-	hypothetical protein
522	 55.91	0	542108..543892	-	594	59800995	-	NGO0562	-	putative dihydrolipoamide dehydrogenase
523	 34.36	-2	543910..544200	-	96	59800996	-	NGO0563	-	hypothetical protein
524	 55.79	0	544445..546034	-	529	59800997	-	NGO0564	-	dihydrolipoamide acetyltransferase
525	 54.95	0	546184..548847	-	887	59800998	aceE	NGO0565	-	pyruvate dehydrogenase subunit E1
526	 55.69	0	549544..551256	+	570	59800999	-	NGO0566	-	prolyl-tRNA synthetase
527	 52.51	0	551319..551975	+	218	59801000	-	NGO0567	-	putative hydrolase
528	 58.55	0	551985..552440	-	151	59801001	-	NGO0568	-	Holliday junction resolvase-like protein
529	 56.83	0	552433..552981	-	182	59801002	-	NGO0569	-	hypothetical protein
530	 52.41	0	552983..553543	-	186	59801003	-	NGO0570	-	hypothetical protein
531	 52.25	0	553869..555665	+	598	59801004	-	NGO0571	-	hypothetical protein
532	 53.32	0	555792..557267	+	491	59801005	-	NGO0572	-	putative carboxy-terminal processing protease
533	 55.33	0	557597..559624	+	675	59801006	-	NGO0573	-	excinuclease ABC subunit B
534	 53.75	0	559802..560560	-	252	59801007	-	NGO0574	-	Cah
535	 56.62	0	561640..562356	-	238	59801008	trmB	NGO0575	-	tRNA (guanine-N(7))-methyltransferase
536	 54.00	0	564000..565886	-	628	59801009	uvrC	NGO0578	-	excinuclease ABC subunit C
537	 55.60	0	565941..568118	-	725	59801010	-	NGO0579	-	putative transport ATPase
538	 54.68	0	568257..569207	+	316	59801011	-	NGO0580	-	putative thioredoxin reductase
539	 49.59	0	569363..569731	+	122	59801012	rpsF	NGO0581	-	30S ribosomal protein S6
52.66	MEAN

6.57	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.