IslandPath Analysis: Neisseria gonorrhoeae FA 1090



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.66   STD DEV: 6.57
Neisseria gonorrhoeae FA 1090, complete genome - 1..2153922
2002 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
385	 55.33	0	412067..413425	+	452	59800858	-	NGO0415	-	hypothetical protein
386	 50.93	0	413598..413921	+	107	59800859	-	NGO0416	-	hypothetical protein
387	 56.29	0	414026..414979	-	317	59800860	-	NGO0417	-	hypothetical protein
388	 55.97	0	415005..415490	-	161	59800861	-	NGO0418	-	putative glycosyl transferase
389	 53.23	0	415590..416177	-	195	59800862	-	NGO0419	-	hypothetical protein
390	 51.29	0	416315..417049	+	244	59800863	-	NGO0420	-	hypothetical protein
391	 53.44	0	417115..417681	-	188	59800864	dcd	NGO0421	-	deoxycytidine triphosphate deaminase
392	 54.87	0	417777..418166	-	129	59800865	-	NGO0422	-	hypothetical protein
393	 52.22	0	418218..419117	-	299	59800866	rdgC	NGO0423	-	recombination associated protein
394	 54.12	0	419148..420605	-	485	59800867	engA	NGO0424	-	GTP-binding protein EngA
395	 51.27	0	420755..421384	-	209	59800868	-	NGO0425	-	hypothetical protein
396	 52.70	0	421385..422680	-	431	59800869	hisS	NGO0426	-	histidyl-tRNA synthetase
397	 51.75	0	422808..423464	-	218	59800870	-	NGO0427	-	hypothetical protein
398	 36.89	-2	423520..423744	-	74	59800871	-	NGO0428	-	hypothetical protein
399	 31.16	-2	423973..424110	-	45	59800872	-	NGO0429	-	hypothetical protein
400	 34.02	-2	425228..425518	-	96	59800873	-	NGO0430	-	hypothetical protein
401	 49.91	0	426078..426620	-	180	59800874	-	NGO0432	-	hypothetical protein
402	 51.84	0	426786..427709	+	307	59800875	-	NGO0433	-	hypothetical protein
403	 57.48	0	427788..428429	-	213	59800876	-	NGO0434	-	hypothetical protein
404	 54.42	0	428484..429275	-	263	59800877	-	NGO0435	-	spermidine synthase
405	 55.93	0	429658..430449	+	263	59800878	panB	NGO0436	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
406	 56.15	0	430572..431408	+	278	59800879	panC	NGO0437	-	pantoate--beta-alanine ligase
407	 53.61	0	433712..434293	+	193	59800880	lolB	NGO0439	-	outer membrane lipoprotein LolB
408	 47.87	0	434303..435148	+	281	59800881	-	NGO0440	-	putative isopentenyl monophosphate kinase
409	 52.54	0	435487..436470	+	327	59800882	-	NGO0441	-	ribose-phosphate pyrophosphokinase
410	 49.21	0	436537..437109	+	190	59800883	-	NGO0442	-	50S ribosomal protein L25/general stress protein Ctc
411	 50.09	0	437235..438404	-	389	59800884	-	NGO0443	-	putative D-alanyl-D-alanine carboxypeptidase / penicillin binding protein
412	 54.03	0	438553..440079	+	508	59800885	-	NGO0444	-	threonine dehydratase
413	 53.48	0	440135..441211	-	358	59800886	-	NGO0445	-	putative ABC transporter, ATP-binding protein
414	 56.57	0	441352..442173	-	273	59800887	-	NGO0446	-	putative ABC transporter
415	 57.06	0	443377..443709	+	110	59800888	-	NGO0448	-	hypothetical protein
416	 37.45	-2	444039..444548	+	169	59800889	-	NGO0449	-	hypothetical protein
417	 55.15	0	445524..446930	+	468	59800890	-	NGO0451	-	replicative DNA helicase
418	 49.40	0	447238..447903	+	221	59800891	-	NGO0452	-	hypothetical protein
419	 46.90	0	447935..448546	+	203	59800892	-	NGO0453	-	hypothetical protein
420	 42.30	-1	448543..449523	+	326	59800893	-	NGO0454	-	hypothetical protein
421	 47.55	0	449502..450113	+	203	59800894	-	NGO0455	-	hypothetical protein
422	 42.94	-1	450100..450588	+	162	59800895	-	NGO0456	-	putative type IV pilin-like protein
423	 52.75	0	450658..450966	-	102	59800896	-	NGO0457	-	hypothetical protein
424	 52.54	0	451840..452292	+	150	59800897	dut	NGO0459	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
425	 51.43	0	452364..453551	+	395	59800898	-	NGO0460	-	hypothetical protein
426	 46.92	0	453863..454642	+	259	59800899	-	NGO0461	-	hypothetical protein
427	 55.56	0	455173..456369	+	398	59800900	-	NGO0462	-	putative phage integrase, putative phage associated protein
428	 49.26	0	456725..456994	-	89	59800901	-	NGO0463	-	putative phage associated protein
429	 45.61	-1	457189..457872	-	227	59800902	-	NGO0464	-	putative phage associated protein
430	 56.42	0	457883..458419	-	178	59800903	-	NGO0465	-	putative phage associated protein
431	 32.87	-2	458530..458745	-	71	59800904	-	NGO0466	-	putative phage associated protein
432	 52.44	0	458797..459288	-	163	59800905	-	NGO0467	-	putative phage associated protein
433	 56.28	0	459285..459467	-	60	59800906	-	NGO0468	-	putative phage associated protein
434	 55.60	0	459607..460293	-	228	59800907	-	NGO0469	-	putative phage associated protein
435	 51.85	0	460362..460523	-	53	59800908	-	NGO0470	-	putative phage associated protein
436	 59.72	+1	460520..460735	-	71	59800909	-	NGO0471	-	putative phage associated protein
437	 56.25	0	460949..461236	-	95	59800910	-	NGO0472	-	putative phage associated protein
438	 65.22	+1	461422..461697	-	91	59800911	-	NGO0473	-	putative phage associated protein
439	 50.94	0	461694..462170	-	158	59800912	-	NGO0474	-	putative phage associated protein
440	 43.28	-1	462203..462403	-	66	59800913	-	NGO0475	-	putative phage associated protein
441	 43.72	-1	462601..463014	-	137	59800914	-	NGO0476	-	putative phage associated protein
442	 51.83	0	463011..463448	-	145	59800915	-	NGO0477	-	putative phage associated protein
443	 44.06	-1	463489..463926	-	145	59800916	-	NGO0478	-	putative phage associated protein
444	 48.26	0	464039..464755	-	238	59800917	-	NGO0479	-	putative lambda repressor protein cI, putative phage associated protein
445	 49.36	0	465140..465295	+	51	59800918	-	NGO0480	-	putative phage associated protein
446	 49.21	0	465272..465460	-	62	59800919	-	NGO0481	-	putative phage associated protein
447	 52.89	0	465465..465827	-	120	59800920	-	NGO0482	-	putative phage associated protein
448	 46.05	-1	465633..465860	+	75	59800921	-	NGO0483	-	putative phage associated protein
449	 52.11	0	465978..467042	+	354	59800922	-	NGO0484	-	putative phage associated protein
450	 54.63	0	467039..468400	+	453	59800923	-	NGO0485	-	putative replicative DNA helicase, putative phage associated protein
451	 58.95	0	468417..468701	+	94	59800924	-	NGO0486	-	putative phage associated protein
452	 59.60	+1	468740..469234	+	164	59800925	-	NGO0487	-	putative phage associated protein
453	 59.33	+1	469411..469560	+	49	59800926	-	NGO0488	-	putative phage associated protein
454	 64.84	+1	469696..470241	+	181	59800927	-	NGO0489	-	putative phage associated protein
455	 51.28	0	470231..470464	+	77	59800928	-	NGO0490	-	putative phage associated protein
456	 53.19	0	470508..470915	+	135	59800929	-	NGO0491	-	putative phage associated protein
457	 38.66	-2	471138..471644	+	168	59800930	-	NGO0492	-	putative phage associated protein
458	 51.35	0	471965..472186	+	73	59800931	-	NGO0493	-	putative phage associated protein
459	 50.44	0	472479..472928	+	149	59800932	-	NGO0494	-	putative phage associated protein
460	 57.31	0	472990..474411	+	473	59800933	-	NGO0495	-	putative phage associated protein
461	 59.03	0	474408..476555	+	715	59800934	-	NGO0496	-	putative phage associated protein
462	 54.49	0	476623..477780	+	385	59800935	-	NGO0497	-	putative phage associated protein
463	 58.07	0	477821..479320	+	499	59800936	-	NGO0498	-	putative phage associated protein
464	 55.65	0	479327..479689	+	120	59800937	-	NGO0499	-	putative phage associated protein
465	 60.26	+1	479692..480222	+	176	59800938	-	NGO0500	-	putative phage associated protein
466	 58.86	0	480370..480702	+	110	59800939	-	NGO0501	-	putative phage associated protein
467	 58.97	0	480699..481127	+	142	59800940	-	NGO0502	-	putative phage associated protein
468	 53.36	0	481153..481926	+	257	59800941	-	NGO0503	-	putative phage associated protein
469	 57.88	0	481987..482316	+	109	59800942	-	NGO0504	-	putative phage associated protein
470	 58.05	0	482328..482594	+	88	59800943	-	NGO0505	-	putative phage associated protein
471	 57.33	0	482594..483193	+	199	59800944	-	NGO0506	-	putative phage associated protein
472	 60.35	+1	483190..484044	+	284	59800945	-	NGO0507	-	putative phage associated protein
473	 60.42	+1	484046..484477	+	143	59800946	-	NGO0508	-	putative phage associated protein
474	 57.45	0	484505..484786	-	93	59800947	-	NGO0509	-	putative phage associated protein
475	 57.79	0	485026..489171	+	1381	59800948	-	NGO0510	-	putative phage associated protein
476	 54.58	0	489283..489588	+	101	59800949	-	NGO0511	-	hypothetical protein
477	 63.57	+1	489593..490528	-	311	59800950	-	NGO0512	-	putative phage associated protein
478	 60.30	+1	489659..490129	+	156	59800951	-	NGO0513	-	putative phage associated protein
479	 66.97	+2	490130..490462	+	110	59800952	-	NGO0514	-	putative phage associated protein
480	 50.85	0	490591..490824	-	77	59800953	-	NGO0515	-	putative phage associated protein
481	 58.91	0	490832..491179	-	115	59800954	-	NGO0516	-	putative plasmid stable inheritance protein putative phage associated protein
482	 64.14	+1	491179..491415	-	78	59800955	-	NGO0517	-	putative pemI-like protein (PemI), putative phage associated protein
483	 56.85	0	491622..492161	+	179	59800956	-	NGO0518	-	putative phage associated protein
484	 57.68	0	492162..492506	+	114	59800957	-	NGO0519	-	putative phage associated protein
52.66	MEAN

6.57	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.