IslandPathversion 1.0

IslandPath Analysis: Neisseria gonorrhoeae FA 1090



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.66 STD DEV: 6.57
Neisseria gonorrhoeae FA 1090, complete genome - 1..2153922
2002 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
250	 53.59	0	269249..270028	-	259	59800723	ksgA	NGO0272	-	dimethyladenosine transferase
251	 58.10	0	271016..272218	+	400	59800724	-	NGO0274	-	tryptophan synthase subunit beta
252	 46.30	0	272294..277075	-	1593	59800725	-	NGO0275	-	IgA-specific metalloendopeptidase
253	 61.46	+1	277605..279680	+	691	59800726	-	NGO0276	-	ComA
254	 53.48	0	279750..280553	-	267	59800727	-	NGO0277	-	ComL
255	 55.64	0	280552..281676	+	374	59800728	-	NGO0278	-	RluD
256	 50.16	0	282855..283175	-	106	59800729	-	NGO0280	-	hypothetical protein
257	 59.87	+1	283231..284010	+	259	59800730	-	NGO0281	-	hypothetical protein
258	 55.21	0	284062..284541	+	159	59800731	-	NGO0282	-	hypothetical protein
259	 59.06	0	284543..285541	+	332	59800732	holA	NGO0283	-	DNA polymerase III subunit delta
260	 53.57	0	285662..286081	+	139	59800733	-	NGO0284	-	hypothetical protein
261	 54.32	0	286106..286672	+	188	59800734	-	NGO0285	-	hypothetical protein
262	 51.75	0	286763..287647	-	294	59800735	-	NGO0286	-	hypothetical protein
263	 56.70	0	288380..289252	-	290	59800736	-	NGO0288	-	RNA polymerase factor sigma-32
264	 57.18	0	289507..291045	-	512	59800737	lnt	NGO0289	-	apolipoprotein N-acyltransferase
265	 57.22	0	291115..291855	-	246	59800738	-	NGO0290	-	hypothetical protein
266	 56.45	0	292059..293780	+	573	59800739	-	NGO0291	-	potassium/proton antiporter
267	 52.56	0	293777..294244	-	155	59800740	-	NGO0292	-	hypothetical protein
268	 55.09	0	294435..295445	-	336	59800741	-	NGO0293	-	HemZ
269	 54.21	0	295527..296642	-	371	59800742	tgt	NGO0294	-	queuine tRNA-ribosyltransferase
270	 49.01	0	296950..298863	+	637	59800743	-	NGO0295	-	putative threonyl-tRNA synthetase
271	 46.93	0	298881..299402	+	173	59800744	infC	NGO0296	-	translation initiation factor IF-3
272	 44.44	-1	299549..299746	+	65	59800745	rpmI	NGO0297	-	50S ribosomal protein L35
273	 49.72	0	299759..300118	+	119	59800746	rplT	NGO0298	-	50S ribosomal protein L20
274	 50.71	0	300359..301348	+	329	161572977	pheS	NGO0299	-	phenylalanyl-tRNA synthetase subunit alpha
275	 42.51	-1	301365..301778	+	137	59800748	-	NGO0300	-	putative very-short-patch-repair endonuclease
276	 28.46	-2	302132..302377	+	81	59800749	-	NGO0302	-	hypothetical protein
277	 36.27	-2	302383..303132	+	249	59800750	-	NGO0303	-	hypothetical protein
278	 53.05	0	303223..305586	+	787	59800751	pheT	NGO0304	-	phenylalanyl-tRNA synthetase subunit beta
279	 48.51	0	305660..305962	+	100	59800752	-	NGO0305	-	IfhA
280	 50.81	0	305946..306254	+	102	59800753	-	NGO0306	-	hypothetical protein
281	 50.82	0	306430..306915	+	161	59800754	fxsA	NGO0307	-	FxsA
282	 53.76	0	307549..308850	+	433	59800755	-	NGO0308	-	putative adenosylmethionine-8-amino-7-oxononanoate aminotranferase
283	 54.17	0	308847..309494	+	215	59800756	bioD	NGO0309	-	dithiobiotin synthetase
284	 56.27	0	309428..309985	+	185	59800757	-	NGO0310	-	hypothetical protein
285	 28.92	-2	310109..310516	+	135	59800758	-	NGO0311	-	hypothetical protein
286	 52.19	0	310506..311396	+	296	59800759	ubiA	NGO0312	-	4-hydroxybenzoate octaprenyltransferase
287	 54.00	0	311581..312030	+	149	59800760	-	NGO0313	-	putative two-component system transcriptional response regulator
288	 53.37	0	312034..312996	+	320	59800761	-	NGO0314	-	HPr kinase/phosphorylase
289	 55.09	0	312977..313831	+	284	59800762	-	NGO0315	-	hypothetical protein
290	 55.10	0	313912..314853	+	313	59800763	rbgA	NGO0316	-	ribosomal biogenesis GTPase
291	 57.05	0	314954..315556	+	200	59800764	-	NGO0317	-	hypothetical protein
292	 52.75	0	315740..317413	+	557	59800765	-	NGO0318	-	hypothetical protein
293	 58.64	0	318158..319777	-	539	59800766	-	NGO0319	-	hypothetical protein
294	 49.87	0	319873..320265	+	130	59800767	-	NGO0320	-	hypothetical protein
295	 51.22	0	320308..321045	+	245	59800768	ubiE	NGO0321	-	ubiquinone/menaquinone biosynthesis methyltransferase
296	 49.58	0	321265..321744	+	159	59800769	-	NGO0322	-	hypothetical protein
297	 54.14	0	321872..322366	-	164	59800770	-	NGO0323	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine-pyrophosphokinase
298	 49.07	0	322376..322750	-	124	59800771	-	NGO0324	-	hypothetical protein
299	 47.96	0	323455..323748	-	97	59800772	-	NGO0326	-	hypothetical protein
300	 54.21	0	323877..324815	-	312	59800773	-	NGO0327	-	putative D-alanyl-D-alanine-endopeptidase
301	 50.20	0	325073..325576	+	167	59800774	-	NGO0328	-	hypothetical protein
302	 56.62	0	325628..326503	+	291	59800775	-	NGO0329	-	hypothetical protein
303	 50.85	0	326609..326962	-	117	59800776	-	NGO0330	-	hypothetical protein
304	 43.59	-1	327041..327274	+	77	59800777	-	NGO0331	-	hypothetical protein
305	 55.67	0	327646..328509	-	287	59800778	-	NGO0332	-	putative reductase
306	 48.75	0	328606..329565	+	319	59800779	hemH	NGO0333	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
307	 53.34	0	329799..331922	+	707	59800780	-	NGO0335	-	polynucleotide phosphorylase/polyadenylase
308	 51.12	0	331995..332663	-	222	59800781	-	NGO0336	-	hypothetical protein
309	 54.29	0	332660..332974	-	104	59800782	-	NGO0337	-	hypothetical protein
310	 55.28	0	333111..333962	+	283	59800783	-	NGO0338	-	diaminopimelate epimerase
311	 51.65	0	333959..334564	+	201	59800784	-	NGO0339	-	hypothetical protein
312	 52.52	0	334760..335692	+	310	59800785	-	NGO0340	-	putative cysteine synthase/cystathionine beta-synthase
313	 47.68	0	337103..337339	+	78	59800786	-	NGO0342	-	hypothetical protein
314	 50.78	0	337539..338558	-	339	59800787	-	NGO0343	-	Lep
315	 51.90	0	338704..340497	-	597	59800788	-	NGO0344	-	GTP-binding protein LepA
316	 55.13	0	340639..341340	-	233	59800789	-	NGO0345	-	putative nucleoside phosphorylase
317	 53.91	0	341526..342638	+	370	59800790	-	NGO0346	-	putative twitching motility-like protein
318	 53.07	0	342672..343649	+	325	59800791	-	NGO0347	-	DNA polymerase III subunit delta'
319	 49.29	0	343653..344003	+	116	59800792	-	NGO0348	-	putative type 4 pilus biogenesis protein
320	 51.79	0	344008..344787	+	259	59800793	-	NGO0349	-	hypothetical protein
321	 54.17	0	344813..345028	+	71	59800794	-	NGO0350	-	hypothetical protein
322	 51.60	0	345129..345440	+	103	59800795	-	NGO0351	-	glutaredoxin-like protein GrlA
323	 41.88	-1	345440..345556	+	38	59800796	-	NGO0352	-	hypothetical protein
324	 53.75	0	345546..346172	+	208	59800797	upp	NGO0353	-	uracil phosphoribosyltransferase
325	 52.65	0	346195..346515	+	106	59800798	-	NGO0354	-	hypothetical protein
326	 38.19	-2	346735..347331	+	198	59800799	-	NGO0355	-	hypothetical protein
327	 42.91	-1	347355..348179	+	274	59800800	-	NGO0356	-	hypothetical protein
328	 37.05	-2	348179..349147	+	322	59800801	-	NGO0357	-	hypothetical protein
329	 50.23	0	349426..349851	+	141	59800802	-	NGO0358	-	hypothetical protein
330	 56.08	0	349869..350633	+	254	59800803	hemD	NGO0359	-	uroporphyrinogen-III synthase
331	 55.92	0	350705..351979	+	424	59800804	-	NGO0360	-	hypothetical protein
332	 55.34	0	351976..353193	+	405	59800805	-	NGO0361	-	hypothetical protein
333	 57.75	0	353268..354332	+	354	59800806	-	NGO0362	-	putative uroporphyrinogen decarboxylase
334	 37.67	-2	354395..356284	-	629	59800807	-	NGO0363	-	putative stress-sensitive restriction system protein
335	 36.22	-2	356285..357322	-	345	59800808	-	NGO0364	-	restriction endonuclease R.NgoVII
336	 40.09	-1	357319..358443	-	374	59800809	-	NGO0365	-	site-specific DNA-methyltransferase M.NgoVII
337	 44.57	-1	358468..358725	+	85	59800810	-	NGO0366	-	hypothetical protein
338	 58.12	0	358830..360209	+	459	59800811	-	NGO0367	-	DNA repair protein RadA
339	 56.43	0	360484..360864	-	126	59800812	-	NGO0368	-	hypothetical protein
340	 53.83	0	361088..361531	-	147	59800813	-	NGO0369	-	hypothetical protein
341	 58.98	0	361486..365088	-	1200	59800814	-	NGO0370	-	putative exodeoxyribonuclease
342	 59.19	0	365165..366073	-	302	59800815	-	NGO0371	-	hypothetical protein
343	 53.62	0	366358..367185	+	275	59800816	-	NGO0372	-	putative ABC transporter, periplasmic binding protein, amino acid
344	 50.63	0	367175..367891	+	238	59800817	-	NGO0373	-	putative ABC transporter, permease protein, amino acid
345	 53.31	0	367901..368656	+	251	59800818	-	NGO0374	-	putative ABC transporter, ATP-binding protein, amino acid
346	 55.17	0	368712..370094	-	460	59800819	-	NGO0375	-	Pgm
347	 50.98	0	370262..370771	-	169	59800820	-	NGO0376	-	putative peptidyl-prolyl cis-trans isomerase B
348	 55.86	0	370891..372306	-	471	59800821	-	NGO0377	-	putative transport protein
349	 59.50	+1	372535..372897	-	120	59800822	-	NGO0378	-	hypothetical protein
52.66	MEAN

6.57	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.