IslandPathversion 1.0

IslandPath Analysis: Neisseria gonorrhoeae FA 1090



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.66 STD DEV: 6.57
Neisseria gonorrhoeae FA 1090, complete genome - 1..2153922
2002 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
156	 51.18	0	175283..175792	-	169	59800629	rimM	NGO0173	-	16S rRNA-processing protein
157	 55.69	0	175808..176053	-	81	59800630	rpsP	NGO0174	-	30S ribosomal protein S16
158	 52.67	0	178639..180045	-	468	59800631	-	NGO0176	-	putative two-component system sensor kinase
159	 56.49	0	180058..180735	-	225	59800632	-	NGO0177	-	putative two-component system transcriptional response regulator
160	 56.09	0	180925..182739	-	604	59800633	-	NGO0178	-	hypothetical protein
161	 49.72	0	182729..183082	-	117	59800634	-	NGO0179	-	hypothetical protein
162	 54.94	0	183091..183738	-	215	59800635	-	NGO0180	-	hypothetical protein
163	 53.57	0	183743..184513	-	256	59800636	-	NGO0181	-	putative sec-independent protein translocase component
164	 55.02	0	184526..185212	-	228	59800637	-	NGO0182	-	putative sec-independent protein translocase component
165	 46.08	-1	185216..185419	-	67	59800638	-	NGO0183	-	hypothetical protein
166	 50.62	0	185466..185789	-	107	59800639	-	NGO0184	-	HitA
167	 52.78	0	185863..186186	-	107	59800640	-	NGO0185	-	putative phosphoribosyl-ATP cyclohydrolase
168	 56.06	0	186327..187391	-	354	59800641	-	NGO0186	-	putative zinc-binding alcohol dehydrogenas
169	 58.36	0	188256..189374	-	372	59800642	-	NGO0187	-	hypothetical protein
170	 48.31	0	189505..189771	+	88	59800643	-	NGO0188	-	hypothetical protein
171	 52.93	0	189979..191835	+	618	59800644	secD	NGO0189	-	preprotein translocase subunit SecD
172	 48.93	0	191839..192774	+	311	59800645	secF	NGO0190	-	preprotein translocase subunit SecF
173	 52.96	0	192979..193248	+	89	59800646	rpsO	NGO0191	-	30S ribosomal protein S15
174	 49.57	0	193358..194650	+	430	59800647	-	NGO0192	-	putative ABC transporter, ATP-binding protein, polyamine
175	 48.34	0	194984..195949	+	321	59800648	-	NGO0195	-	putative ABC transporter, permease protein, polyamine
176	 51.13	0	195949..196836	+	295	59800649	-	NGO0196	-	putative ABC transporter, permease protein, polyamine
177	 52.11	0	196858..198258	+	466	59800650	-	NGO0197	-	putative oxidoreductase
178	 56.85	0	198352..199818	-	488	59800651	-	NGO0198	-	putative transporter, ammonium
179	 54.21	0	200272..201531	-	419	59800652	rho	NGO0199	-	transcription termination factor Rho
180	 55.14	0	201752..204136	-	794	59800653	-	NGO0200	-	phosphoenolpyruvate synthase
181	 55.20	0	204491..205144	+	217	59800654	-	NGO0201	-	IS1016 transposase
182	 54.26	0	205270..206091	+	273	59800655	-	NGO0202	-	hypothetical protein
183	 59.07	0	206177..206887	-	236	59800656	-	NGO0203	-	putative phosphatase
184	 59.30	+1	206877..207704	-	275	59800657	-	NGO0204	-	hypothetical protein
185	 57.05	0	208087..208710	+	207	59800658	-	NGO0205	-	LolA
186	 55.15	0	208983..210119	+	378	59800659	-	NGO0206	-	putative ABC transporter, periplasmic binding protein, polyamine
187	 30.69	-2	210214..211197	+	327	59800660	-	NGO0207	-	putative sugar transferase
188	 57.06	0	211238..211768	+	176	59800661	-	NGO0208	-	hypothetical protein
189	 55.33	0	211936..213531	-	531	59800662	prfC	NGO0209	-	peptide chain release factor 3
190	 53.54	0	213638..214033	-	131	59800663	-	NGO0210	-	phosphoribosyl-AMP cyclohydrolase
191	 61.46	+1	214064..214831	-	255	59800664	-	NGO0211	-	imidazole glycerol phosphate synthase subunit HisF
192	 59.08	0	214844..215581	-	245	59800665	-	NGO0212	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
193	 54.93	0	215614..216252	-	212	59800666	hisH	NGO0213	-	imidazole glycerol phosphate synthase subunit HisH
194	 59.95	+1	216382..217884	-	500	59800667	-	NGO0214	-	putative phosphotransacetylase
195	 60.81	+1	218069..219127	-	352	59800668	-	NGO0215	-	ABC transporter, ATP-binding protein, iron related
196	 52.03	0	219148..220677	-	509	59800669	-	NGO0216	-	ABC transporter, permease protein, iron related
197	 55.82	0	220733..221728	-	331	59800670	-	NGO0217	-	ABC transporter, periplasmic binding protein, iron related
198	 52.92	0	222119..222460	-	113	59800671	-	NGO0218	-	hypothetical protein
199	 57.44	0	222518..223894	-	458	59800672	-	NGO0219	-	argininosuccinate lyase
200	 57.01	0	223913..224782	-	289	59800673	-	NGO0220	-	putative UTP--glucose-1-phosphate uridylyltransferase
201	 57.17	0	224810..225409	-	199	59800674	-	NGO0221	-	putative deoxyribonucleotide triphosphate pyrophosphatase
202	 56.84	0	225402..225635	-	77	59800675	-	NGO0222	-	hypothetical protein
203	 53.18	0	225743..226276	-	177	59800676	-	NGO0223	-	inorganic pyrophosphatase
204	 59.48	+1	226378..226836	-	152	59800677	ntpA	NGO0224	-	dATP pyrophosphohydrolase
205	 50.98	0	227386..229272	+	628	59800678	-	NGO0225	-	MafB1
206	 31.44	-2	229300..229722	+	140	59800679	-	NGO0226	-	hypothetical protein
207	 44.72	-1	230200..230445	+	81	59800680	-	NGO0227	-	hypothetical protein
208	 31.78	-2	230448..230834	+	128	59800681	-	NGO0228	-	hypothetical protein
209	 33.59	-2	231055..231444	+	129	59800682	-	NGO0229	-	hypothetical protein
210	 58.98	0	231484..232941	-	485	59800683	-	NGO0230	-	putative transport protein, potassium
211	 58.60	0	232956..233786	-	276	59800684	apaH	NGO0231	-	diadenosine tetraphosphatase
212	 62.05	+1	233863..234252	-	129	59800685	-	NGO0232	-	hypothetical protein
213	 58.52	0	234399..234926	-	175	59800686	-	NGO0233	-	outer membrane protein
214	 55.44	0	235369..236544	-	391	59800687	-	NGO0234	-	coproporphyrinogen III oxidase
215	 59.71	+1	236601..239072	-	823	59800688	-	NGO0235	-	putative DNA ligase
216	 56.64	0	239206..240492	-	428	59800689	-	NGO0236	-	hypothetical protein
217	 58.99	0	240686..241258	-	190	59800690	-	NGO0237	-	N-acetyl-anhydromuranmyl-L-alanine amidase
218	 55.80	0	241342..242289	+	315	59800691	-	NGO0238	-	hypothetical protein
219	 58.13	0	242398..243018	+	206	59800692	tdk	NGO0239	-	thymidylate kinase
220	 54.80	0	243240..244520	+	426	59800693	-	NGO0240	-	putative malic enzyme, malate dehydrogenase/oxaloacetate-decarboxylating
221	 45.59	-1	244633..244836	+	67	59800694	-	NGO0241	-	hypothetical protein
222	 56.30	0	244922..245953	+	343	59800695	lpxK	NGO0242	-	tetraacyldisaccharide 4'-kinase
223	 48.31	0	246159..246692	+	177	59800696	-	NGO0243	-	hypothetical protein
224	 47.54	0	246914..247096	+	60	59800697	-	NGO0244	-	hypothetical protein
225	 59.84	+1	247093..247854	+	253	59800698	-	NGO0245	-	3-deoxy-manno-octulosonate cytidylyltransferase
226	 49.49	0	247877..248173	+	98	59800699	-	NGO0246	-	hypothetical protein
227	 49.70	0	248228..248392	+	54	59800700	-	NGO0247	-	hypothetical protein
228	 53.94	0	248915..249700	+	261	59800701	trpA	NGO0248	-	tryptophan synthase subunit alpha
229	 55.67	0	249737..250609	+	290	59800702	-	NGO0249	-	acetyl-CoA carboxylase subunit beta
230	 58.50	0	250669..251280	-	203	59800703	-	NGO0250	-	Cnp1
231	 54.26	0	251643..252029	+	128	59800704	-	NGO0252	-	hypothetical protein
232	 53.20	0	252030..252623	-	197	59800705	-	NGO0253	-	hypothetical protein
233	 60.97	+1	253334..254368	+	344	59800706	-	NGO0255	-	dihydroorotase
234	 55.87	0	254447..254872	-	141	59800707	nusB	NGO0256	-	transcription antitermination protein NusB
235	 56.18	0	254950..255426	-	158	59800708	ribH	NGO0257	-	riboflavin synthase subunit beta
236	 59.26	+1	255473..255796	-	107	59800709	-	NGO0258	-	hypothetical protein
237	 55.97	0	255967..256686	+	239	59800710	rnc	NGO0259	-	ribonuclease III
238	 53.21	0	256721..257656	+	311	59800711	era	NGO0260	-	GTP-binding protein Era
239	 59.17	0	260589..261215	-	208	59800712	-	NGO0261	-	N-(5'-phosphoribosyl)anthranilate isomerase
240	 54.07	0	261274..261765	-	163	59800713	greB	NGO0262	-	transcription elongation factor GreB
241	 57.99	0	261865..263409	-	514	59800714	-	NGO0263	-	amidophosphoribosyltransferase
242	 54.82	0	263603..264100	-	165	59800715	-	NGO0264	-	putative bacteriocin production protein
243	 55.14	0	264093..265133	-	346	59800716	-	NGO0265	-	tetrapac protein
244	 56.94	0	265147..266421	-	424	59800717	-	NGO0266	-	putative folylpolyglutamate synthase/dihydrofolate synthase
245	 55.10	0	266452..266892	-	146	59800718	-	NGO0267	-	FolI
246	 51.73	0	266897..267271	-	124	59800719	-	NGO0268	-	hypothetical protein
247	 53.77	0	267329..268057	-	242	59800720	-	NGO0269	-	putative ABC transporter, ATP-binding protein, amino acid
248	 47.37	0	268099..268554	-	151	59800721	-	NGO0270	-	hypothetical protein
249	 45.44	-1	268665..269234	-	189	59800722	-	NGO0271	-	hypothetical protein
250	 53.59	0	269249..270028	-	259	59800723	ksgA	NGO0272	-	dimethyladenosine transferase
251	 58.10	0	271016..272218	+	400	59800724	-	NGO0274	-	tryptophan synthase subunit beta
252	 46.30	0	272294..277075	-	1593	59800725	-	NGO0275	-	IgA-specific metalloendopeptidase
253	 61.46	+1	277605..279680	+	691	59800726	-	NGO0276	-	ComA
254	 53.48	0	279750..280553	-	267	59800727	-	NGO0277	-	ComL
255	 55.64	0	280552..281676	+	374	59800728	-	NGO0278	-	RluD
52.66	MEAN

6.57	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.