IslandPath Analysis: Neisseria gonorrhoeae FA 1090



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.66   STD DEV: 6.57
Neisseria gonorrhoeae FA 1090, complete genome - 1..2153922
2002 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1903	 55.88	0	2053959..2054876	+	305	59802376	-	NGO2075	-	homoserine kinase
1904	 59.73	+1	2055062..2055580	-	172	59802377	-	NGO2076	-	putative glucokinase
1905	 60.25	+1	2055600..2056985	-	461	59802378	-	NGO2077	-	GntP
1906	 60.95	+1	2057326..2058918	+	530	59802379	-	NGO2078	-	putative ABC transporter, permease protein
1907	 55.00	0	2058947..2059546	+	199	59802380	-	NGO2079	-	putative carbonic anhydrase
1908	 59.08	0	2059543..2060148	+	201	59802381	-	NGO2080	-	hypothetical protein
1909	 54.01	0	2060207..2060593	+	128	59802382	-	NGO2081	-	hypothetical protein
1910	 59.66	+1	2060646..2061116	+	156	59802383	-	NGO2082	-	SPOUT methyltransferase superfamily protein
1911	 55.06	0	2061190..2061456	+	88	59802384	-	NGO2083	-	hypothetical protein
1912	 53.80	0	2061613..2062296	+	227	59802385	-	NGO2084	-	hypothetical protein
1913	 52.91	0	2062426..2062941	+	171	59802386	coaD	NGO2085	-	phosphopantetheine adenylyltransferase
1914	 45.80	-1	2063080..2064387	-	435	59802387	-	NGO2086	-	hypothetical protein
1915	 55.05	0	2064373..2065026	+	217	59802388	-	NGO2087	-	IS1016 transposase
1916	 58.50	0	2065061..2065819	-	252	59802389	-	NGO2088	-	putative ABC transporter, ATP-binding protein, enterobactin
1917	 62.04	+1	2065903..2066529	-	208	59802390	-	NGO2089	-	hypothetical protein
1918	 55.90	0	2066574..2067548	-	324	59802391	-	NGO2090	-	putative ABC transporter, permease protein, enterobactin
1919	 58.00	0	2067538..2068506	-	322	59802392	-	NGO2091	-	putative ABC transporter, permease protein, enterobactin
1920	 56.07	0	2068734..2069705	-	323	59802393	-	NGO2092	-	ferric enterobactin periplasmic binding protein
1921	 54.44	0	2069857..2071998	-	713	59802394	-	NGO2093	-	FetA
1922	 55.67	0	2072506..2072796	+	96	59802395	groES	NGO2094	-	co-chaperonin GroES
1923	 55.66	0	2072888..2074522	+	544	59802396	groEL	NGO2095	-	chaperonin GroEL
1924	 55.70	0	2075176..2076762	+	528	59802397	-	NGO2096	-	putative sodium-dependent transporter
1925	 61.70	+1	2076903..2077325	-	140	59802398	-	NGO2097	-	hypothetical protein
1926	 55.36	0	2077519..2078739	-	406	59802399	-	NGO2098	-	hypothetical protein
1927	 56.73	0	2078750..2078920	-	56	59802400	-	NGO2099	-	hypothetical protein
1928	 54.32	0	2078991..2079314	+	107	59802401	cyaY	NGO2100	-	frataxin-like protein
1929	 45.71	-1	2079347..2079766	+	139	59802402	-	NGO2101	-	hypothetical protein
1930	 53.06	0	2079788..2080294	+	168	59802403	-	NGO2102	-	S-ribosylhomocysteinase
1931	 56.53	0	2080439..2083231	+	930	59802404	-	NGO2103	-	hypothetical protein
1932	 46.70	0	2083793..2084488	+	231	59802405	-	NGO2104	-	hypothetical protein
1933	 51.37	0	2084728..2089134	-	1468	59802406	-	NGO2105	-	adhesion and penetration protein
1934	 50.89	0	2089206..2089541	+	111	59802407	-	NGO2106	-	hypothetical protein
1935	 60.13	+1	2089572..2090918	+	448	59802408	trmE	NGO2107	-	tRNA modification GTPase TrmE
1936	 52.38	0	2090831..2091019	-	62	59802409	-	NGO2108	-	hypothetical protein
1937	 56.01	0	2091811..2094240	-	809	59802410	-	NGO2109	-	hemoglobin-haptoglobin utilization protein B
1938	 61.90	+1	2095595..2097208	+	537	59802411	-	NGO2111	-	hypothetical protein
1939	 58.47	0	2097269..2099158	-	629	59802412	-	NGO2112	-	putative para-aminobenzoate synthase component
1940	 54.52	0	2099285..2100214	+	309	59802413	-	NGO2113	-	hypothetical protein
1941	 56.10	0	2102863..2103723	+	286	59802414	-	NGO2116	-	putative ABC transporter, ATP-binding protein
1942	 55.73	0	2103771..2104547	+	258	59802415	-	NGO2117	-	ABC transporter inner membrane protein
1943	 54.79	0	2104529..2105092	+	187	59802416	-	NGO2118	-	hypothetical protein
1944	 54.15	0	2105123..2105713	+	196	59802417	-	NGO2119	-	hypothetical protein
1945	 56.27	0	2105764..2106042	+	92	59802418	-	NGO2120	-	hypothetical protein
1946	 58.27	0	2106039..2106872	+	277	59802419	-	NGO2121	-	hypothetical protein
1947	 55.07	0	2106877..2107359	+	160	59802420	-	NGO2122	-	hypothetical protein
1948	 59.11	0	2107359..2107742	+	127	59802421	-	NGO2123	-	hypothetical protein
1949	 52.76	0	2107739..2108227	+	162	59802422	-	NGO2124	-	putative thioredoxin
1950	 58.00	0	2108308..2108826	-	172	59802423	-	NGO2125	-	putative acetyltransferase
1951	 46.76	0	2108958..2109173	+	71	59802424	rpmE	NGO2126	-	50S ribosomal protein L31
1952	 35.36	-2	2109425..2110066	+	213	59802425	-	NGO2127	-	CadD
1953	 59.81	+1	2110212..2111888	+	558	59802426	-	NGO2128	-	hypothetical protein
1954	 53.80	0	2112095..2112700	+	201	59802427	-	NGO2130	-	RegF
1955	 56.49	0	2112772..2113164	+	130	59802428	-	NGO2131	-	ClpXP protease specificity-enhancing factor
1956	 50.54	0	2113212..2113397	+	61	59802429	-	NGO2132	-	hypothetical protein
1957	 55.62	0	2113363..2113905	-	180	59802430	-	NGO2133	-	hypothetical protein
1958	 54.46	0	2113941..2114153	-	70	59802431	rpsU	NGO2134	-	30S ribosomal protein S21
1959	 59.81	+1	2114442..2116292	-	616	59802432	-	NGO2135	-	putative transglycosylase
1960	 46.24	0	2116331..2116516	+	61	59802433	-	NGO2136	-	hypothetical protein
1961	 57.86	0	2116669..2117406	+	245	59802434	-	NGO2137	-	putative ABC transporter, ATP-binding protein
1962	 58.37	0	2117408..2118094	+	228	59802435	-	NGO2138	-	putative ABC transporter, permease protein
1963	 55.36	0	2118253..2119119	+	288	59802436	-	NGO2139	-	hypothetical protein
1964	 57.77	0	2119182..2119754	-	190	59802437	-	NGO2140	-	aromatic acid decarboxylase
1965	 57.38	0	2119909..2120769	+	286	59802438	-	NGO2141	-	putative chromosome segregation protein
1966	 39.72	-1	2120817..2121239	-	140	59802439	-	NGO2142	-	hypothetical protein
1967	 48.02	0	2121443..2121796	+	117	59802440	-	NGO2143	-	AtpI
1968	 50.87	0	2121786..2122652	+	288	59802441	-	NGO2144	-	F0F1 ATP synthase subunit A
1969	 48.95	0	2122709..2122945	+	78	59802442	-	NGO2145	-	F0F1 ATP synthase subunit C
1970	 50.96	0	2123015..2123485	+	156	59802443	-	NGO2146	-	F0F1 ATP synthase subunit B
1971	 45.69	-1	2123490..2124023	+	177	59802444	-	NGO2147	-	F0F1 ATP synthase subunit delta
1972	 50.26	0	2124034..2125581	+	515	59802445	-	NGO2148	-	F0F1 ATP synthase subunit alpha
1973	 47.03	0	2125606..2126481	+	291	59802446	-	NGO2149	-	F0F1 ATP synthase subunit gamma
1974	 50.86	0	2126519..2127916	+	465	59802447	-	NGO2150	-	F0F1 ATP synthase subunit beta
1975	 50.59	0	2127927..2128349	+	140	59802448	atpC	NGO2151	-	F0F1 ATP synthase subunit epsilon
1976	 56.08	0	2128521..2129417	+	298	59802449	glyQ	NGO2153	-	glycyl-tRNA synthetase subunit alpha
1977	 57.22	0	2129534..2131597	+	687	59802450	glyS	NGO2154	-	glycyl-tRNA synthetase subunit beta
1978	 55.83	0	2132700..2133539	+	279	59802451	-	NGO2156	-	LgtB
1979	 51.33	0	2134535..2135551	+	338	59802452	-	NGO2158	-	LgtD
1980	 48.64	0	2135570..2136412	+	280	59802453	-	NGO2159	-	LgtE
1981	 58.40	0	2136608..2137333	-	241	59802454	-	NGO2160	-	hypothetical protein
1982	 56.98	0	2137437..2138231	+	264	59802455	-	NGO2161	-	hypothetical protein
1983	 55.97	0	2138449..2138934	-	161	59802456	-	NGO2162	-	hypothetical protein
1984	 58.23	0	2138999..2139745	-	248	59802457	fabG	NGO2163	-	3-ketoacyl-(acyl-carrier-protein) reductase
1985	 55.75	0	2139807..2141372	-	521	59802458	guaA	NGO2164	-	bifunctional GMP synthase/glutamine amidotransferase protein
1986	 57.78	0	2141472..2143340	-	622	59802459	-	NGO2165	-	putative ABC transporter, ATP-binding protein
1987	 59.44	+1	2143479..2144405	-	308	59802460	-	NGO2166	-	acyl-carrier-protein S-malonyltransferase
1988	 54.84	0	2144431..2144802	-	123	59802461	-	NGO2167	-	hypothetical protein
1989	 55.24	0	2144849..2145811	-	320	59802462	-	NGO2168	-	3-oxoacyl-(acyl carrier protein) synthase III
1990	 39.68	-1	2146659..2146910	-	83	59802463	-	NGO2170	-	hypothetical protein
1991	 57.88	0	2147048..2148094	-	348	59802464	-	NGO2171	-	putative glycerol-3-phosphate acyltransferase PlsX
1992	 53.03	0	2148184..2148711	-	175	59802465	-	NGO2172	-	hypothetical protein
1993	 57.22	0	2148886..2149065	-	59	59802466	rpmF	NGO2173	-	50S ribosomal protein L32
1994	 51.90	0	2149099..2149599	-	166	59802467	-	NGO2174	-	hypothetical protein
1995	 56.51	0	2149747..2150337	+	196	59802468	maf	NGO2175	-	Maf-like protein
1996	 52.72	0	2150090..2151172	-	360	59802469	-	NGO2176	-	hypothetical protein
1997	 52.75	0	2150384..2151109	+	241	59802470	-	NGO2177	-	hypothetical protein
1998	 55.68	0	2151190..2152827	-	545	59802471	-	NGO2178	-	putative inner membrane protein translocase component YidC
1999	 54.07	0	2152852..2152986	+	44	59802472	-	NGO2179	-	hypothetical protein
2000	 57.21	0	2153000..2153221	-	73	59802473	-	NGO2180	-	hypothetical protein
2001	 56.28	0	2153286..2153651	-	121	59802474	rnpA	NGO2181	-	ribonuclease P
2002	 59.26	+1	2153654..2153788	-	44	59802475	rpmH	NGO2182	-	50S ribosomal protein L34
52.66	MEAN

6.57	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.