IslandPath Analysis: Neisseria gonorrhoeae FA 1090



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.66   STD DEV: 6.57
Neisseria gonorrhoeae FA 1090, complete genome - 1..2153922
2002 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1852	 54.67	0	1988735..1988959	+	74	59802325	-	NGO2017	-	hypothetical protein
1853	 47.69	0	1989067..1989261	+	64	59802326	-	NGO2018	-	hypothetical protein
1854	 63.16	+1	1989359..1990129	-	256	59802327	-	NGO2019	-	hypothetical protein
1855	 57.27	0	1990296..1992998	+	900	161572971	-	NGO2020	-	phosphoenolpyruvate carboxylase
1856	 56.97	0	1993121..1994110	+	329	59802329	-	NGO2021	-	putative glycerol-3-phosphate dehydrogenase
1857	 53.33	0	1994164..1994493	+	109	59802330	-	NGO2022	-	hypothetical protein
1858	 54.90	0	1994504..1994809	+	101	59802331	-	NGO2023	-	hypothetical protein
1859	 51.62	0	1995172..1995603	+	143	59802332	rplM	NGO2024	-	50S ribosomal protein L13
1860	 53.44	0	1995616..1996008	+	130	59802333	rpsI	NGO2025	-	30S ribosomal protein S9
1861	 24.04	-2	1996389..1996883	-	164	59802334	-	NGO2026	-	hypothetical protein
1862	 55.81	0	1997076..1998005	-	309	59802335	-	NGO2027	-	MetR
1863	 53.20	0	1998134..1998883	+	249	59802336	-	NGO2028	-	hypothetical protein
1864	 56.70	0	1999006..1999587	+	193	59802337	-	NGO2029	-	PetA
1865	 51.04	0	1999606..2000955	+	449	59802338	-	NGO2030	-	PetB
1866	 48.54	0	2000970..2001758	+	262	59802339	-	NGO2031	-	PetC
1867	 54.10	0	2002090..2003880	+	596	59802340	-	NGO2032	-	hypothetical protein
1868	 58.14	0	2003947..2004579	-	210	59802341	-	NGO2033	-	putative hydrolase
1869	 57.94	0	2004672..2005496	+	274	59802342	-	NGO2034	-	DNA ligase
1870	 53.19	0	2005565..2006128	+	187	59802343	-	NGO2035	-	hypoxanthine-guanine phosphoribosyltransferase
1871	 57.31	0	2006212..2006649	+	145	59802344	-	NGO2036	-	putative sugar transport PTS system IIA protein
1872	 54.07	0	2006870..2007139	+	89	59802345	-	NGO2037	-	PtsH
1873	 57.55	0	2007139..2008914	+	591	59802346	-	NGO2038	-	PtsI
1874	 58.81	0	2009041..2009982	-	313	59802347	-	NGO2039	-	putative ABC transporter, ATP-binding protein, amino acid
1875	 57.65	0	2009991..2010866	-	291	59802348	-	NGO2040	-	hypothetical protein
1876	 57.68	0	2011464..2013365	+	633	59802349	-	NGO2041	-	thiamine biosynthesis protein ThiC
1877	 51.80	0	2015247..2015468	+	73	59802350	-	NGO2042	-	hypothetical protein
1878	 58.10	0	2017051..2017365	+	104	59802351	-	NGO2043	-	putative dehydrogenase related protein
1879	 55.23	0	2017440..2019494	-	684	59802352	metG	NGO2044	-	methionyl-tRNA synthetase
1880	 58.35	0	2019610..2021448	-	612	59802353	-	NGO2045	-	D-fructose-6-phosphate amidotransferase
1881	 53.97	0	2021482..2021670	+	62	59802354	-	NGO2046	-	hypothetical protein
1882	 50.19	0	2021721..2022242	+	173	59802355	-	NGO2047	-	hypothetical protein
1883	 60.71	+1	2022525..2023850	-	441	59802356	-	NGO2048	-	GNA33)
1884	 54.50	0	2024900..2026066	+	388	59802357	-	NGO2050	-	hypothetical protein
1885	 58.77	0	2026373..2027638	+	421	59802358	-	NGO2051	-	hypothetical protein
1886	 54.24	0	2027710..2028039	-	109	59802359	-	NGO2052	-	PhnA
1887	 58.21	0	2028114..2029484	-	456	59802360	-	NGO2053	-	UDP-N-acetylglucosamine pyrophosphorylase
1888	 54.21	0	2029539..2029811	-	90	59802361	-	NGO2054	-	hypothetical protein
1889	 55.56	0	2029787..2030515	-	242	59802362	-	NGO2055	-	putative hydrolase
1890	 59.08	0	2030574..2031575	+	333	59802363	-	NGO2056	-	putative ABC transporter, thiamine-binding periplasmic protein
1891	 54.06	0	2031669..2032517	+	282	59802364	-	NGO2057	-	hypothetical protein
1892	 61.28	+1	2032543..2033025	+	160	59802365	-	NGO2058	-	hypothetical protein
1893	 55.07	0	2033109..2034677	-	522	59802366	-	NGO2059	-	trifunctional thioredoxin/methionine sulfoxide reductase A/B protein
1894	 56.95	0	2034823..2036088	+	421	59802367	-	NGO2060	-	putative signal recognition particle protein
1895	 53.90	0	2039365..2040288	-	307	59802368	lpxC	NGO2065	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
1896	 60.58	+1	2046714..2047403	-	229	59802369	-	NGO2068	-	hypothetical protein
1897	 55.38	0	2047400..2048143	-	247	59802370	-	NGO2069	-	NlaB
1898	 58.16	0	2048173..2048736	-	187	59802371	-	NGO2070	-	D,D-heptose 1,7-bisphosphate phosphatase
1899	 54.39	0	2048879..2050531	+	550	59802372	-	NGO2071	-	hypothetical protein
1900	 56.91	0	2050598..2051653	-	351	59802373	-	NGO2072	-	lipooligosaccharide glycosyl transferase G
1901	 58.13	0	2051805..2053046	-	413	59802374	-	NGO2073	-	TnaB
1902	 55.42	0	2053194..2053922	+	242	59802375	-	NGO2074	-	3-demethylubiquinone-9 3-methyltransferase
1903	 55.88	0	2053959..2054876	+	305	59802376	-	NGO2075	-	homoserine kinase
1904	 59.73	+1	2055062..2055580	-	172	59802377	-	NGO2076	-	putative glucokinase
1905	 60.25	+1	2055600..2056985	-	461	59802378	-	NGO2077	-	GntP
1906	 60.95	+1	2057326..2058918	+	530	59802379	-	NGO2078	-	putative ABC transporter, permease protein
1907	 55.00	0	2058947..2059546	+	199	59802380	-	NGO2079	-	putative carbonic anhydrase
1908	 59.08	0	2059543..2060148	+	201	59802381	-	NGO2080	-	hypothetical protein
1909	 54.01	0	2060207..2060593	+	128	59802382	-	NGO2081	-	hypothetical protein
1910	 59.66	+1	2060646..2061116	+	156	59802383	-	NGO2082	-	SPOUT methyltransferase superfamily protein
1911	 55.06	0	2061190..2061456	+	88	59802384	-	NGO2083	-	hypothetical protein
1912	 53.80	0	2061613..2062296	+	227	59802385	-	NGO2084	-	hypothetical protein
1913	 52.91	0	2062426..2062941	+	171	59802386	coaD	NGO2085	-	phosphopantetheine adenylyltransferase
1914	 45.80	-1	2063080..2064387	-	435	59802387	-	NGO2086	-	hypothetical protein
1915	 55.05	0	2064373..2065026	+	217	59802388	-	NGO2087	-	IS1016 transposase
1916	 58.50	0	2065061..2065819	-	252	59802389	-	NGO2088	-	putative ABC transporter, ATP-binding protein, enterobactin
1917	 62.04	+1	2065903..2066529	-	208	59802390	-	NGO2089	-	hypothetical protein
1918	 55.90	0	2066574..2067548	-	324	59802391	-	NGO2090	-	putative ABC transporter, permease protein, enterobactin
1919	 58.00	0	2067538..2068506	-	322	59802392	-	NGO2091	-	putative ABC transporter, permease protein, enterobactin
1920	 56.07	0	2068734..2069705	-	323	59802393	-	NGO2092	-	ferric enterobactin periplasmic binding protein
1921	 54.44	0	2069857..2071998	-	713	59802394	-	NGO2093	-	FetA
1922	 55.67	0	2072506..2072796	+	96	59802395	groES	NGO2094	-	co-chaperonin GroES
1923	 55.66	0	2072888..2074522	+	544	59802396	groEL	NGO2095	-	chaperonin GroEL
1924	 55.70	0	2075176..2076762	+	528	59802397	-	NGO2096	-	putative sodium-dependent transporter
1925	 61.70	+1	2076903..2077325	-	140	59802398	-	NGO2097	-	hypothetical protein
1926	 55.36	0	2077519..2078739	-	406	59802399	-	NGO2098	-	hypothetical protein
1927	 56.73	0	2078750..2078920	-	56	59802400	-	NGO2099	-	hypothetical protein
1928	 54.32	0	2078991..2079314	+	107	59802401	cyaY	NGO2100	-	frataxin-like protein
1929	 45.71	-1	2079347..2079766	+	139	59802402	-	NGO2101	-	hypothetical protein
1930	 53.06	0	2079788..2080294	+	168	59802403	-	NGO2102	-	S-ribosylhomocysteinase
1931	 56.53	0	2080439..2083231	+	930	59802404	-	NGO2103	-	hypothetical protein
1932	 46.70	0	2083793..2084488	+	231	59802405	-	NGO2104	-	hypothetical protein
1933	 51.37	0	2084728..2089134	-	1468	59802406	-	NGO2105	-	adhesion and penetration protein
1934	 50.89	0	2089206..2089541	+	111	59802407	-	NGO2106	-	hypothetical protein
1935	 60.13	+1	2089572..2090918	+	448	59802408	trmE	NGO2107	-	tRNA modification GTPase TrmE
1936	 52.38	0	2090831..2091019	-	62	59802409	-	NGO2108	-	hypothetical protein
1937	 56.01	0	2091811..2094240	-	809	59802410	-	NGO2109	-	hemoglobin-haptoglobin utilization protein B
1938	 61.90	+1	2095595..2097208	+	537	59802411	-	NGO2111	-	hypothetical protein
1939	 58.47	0	2097269..2099158	-	629	59802412	-	NGO2112	-	putative para-aminobenzoate synthase component
1940	 54.52	0	2099285..2100214	+	309	59802413	-	NGO2113	-	hypothetical protein
1941	 56.10	0	2102863..2103723	+	286	59802414	-	NGO2116	-	putative ABC transporter, ATP-binding protein
1942	 55.73	0	2103771..2104547	+	258	59802415	-	NGO2117	-	ABC transporter inner membrane protein
1943	 54.79	0	2104529..2105092	+	187	59802416	-	NGO2118	-	hypothetical protein
1944	 54.15	0	2105123..2105713	+	196	59802417	-	NGO2119	-	hypothetical protein
1945	 56.27	0	2105764..2106042	+	92	59802418	-	NGO2120	-	hypothetical protein
1946	 58.27	0	2106039..2106872	+	277	59802419	-	NGO2121	-	hypothetical protein
1947	 55.07	0	2106877..2107359	+	160	59802420	-	NGO2122	-	hypothetical protein
1948	 59.11	0	2107359..2107742	+	127	59802421	-	NGO2123	-	hypothetical protein
1949	 52.76	0	2107739..2108227	+	162	59802422	-	NGO2124	-	putative thioredoxin
1950	 58.00	0	2108308..2108826	-	172	59802423	-	NGO2125	-	putative acetyltransferase
1951	 46.76	0	2108958..2109173	+	71	59802424	rpmE	NGO2126	-	50S ribosomal protein L31
52.66	MEAN

6.57	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.