IslandPath Analysis: Neisseria gonorrhoeae FA 1090



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.66   STD DEV: 6.57
Neisseria gonorrhoeae FA 1090, complete genome - 1..2153922
2002 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1808	 48.49	0	1949393..1950355	-	320	59802281	-	NGO1972	-	MafA4
1809	 53.61	0	1950486..1951205	-	239	59802282	pyrH	NGO1973	-	uridylate kinase
1810	 51.35	0	1951422..1952276	-	284	59802283	tsf	NGO1974	-	elongation factor Ts
1811	 51.85	0	1952405..1953133	-	242	59802284	rpsB	NGO1975	-	30S ribosomal protein S2
1812	 56.84	0	1953306..1953539	-	77	59802285	-	NGO1976	-	hypothetical protein
1813	 57.88	0	1953539..1954198	+	219	59802286	-	NGO1977	-	hypothetical protein
1814	 54.65	0	1954259..1954849	+	196	59802287	-	NGO1978	-	hypothetical protein
1815	 56.99	0	1955233..1956699	+	488	59802288	-	NGO1980	-	malate:quinone oxidoreductase
1816	 50.98	0	1956886..1957446	-	186	59802289	-	NGO1981	-	hypothetical protein
1817	 45.67	-1	1957498..1957797	-	99	59802290	-	NGO1982	-	hypothetical protein
1818	 56.54	0	1957896..1958675	-	259	59802291	-	NGO1983	-	hypothetical protein
1819	 57.30	0	1958715..1959365	-	216	59802292	-	NGO1984	-	hypothetical protein
1820	 59.77	+1	1959373..1959981	-	202	59802293	-	NGO1985	-	hypothetical protein
1821	 59.60	+1	1960045..1960638	-	197	59802294	gmhA	NGO1986	-	phosphoheptose isomerase
1822	 51.44	0	1960643..1960990	-	115	59802295	-	NGO1987	-	hypothetical protein
1823	 57.31	0	1961037..1961912	+	291	59802296	-	NGO1988	-	hypothetical protein
1824	 51.70	0	1961935..1962756	+	273	59802297	-	NGO1989	-	hypothetical protein
1825	 57.84	0	1962756..1963910	+	384	59802298	obgE	NGO1990	-	GTPase ObgE
1826	 42.62	-1	1963964..1964911	+	315	59802299	-	NGO1991	-	NgoIM
1827	 38.08	-2	1964908..1965960	+	350	59802300	-	NGO1992	-	putative NgoI restriction endonuclease
1828	 56.61	0	1965976..1967397	+	473	59802301	-	NGO1993	-	hypothetical protein
1829	 53.85	0	1967568..1968347	+	259	59802302	-	NGO1994	-	putative exodeoxyribonuclease
1830	 54.49	0	1968334..1968678	+	114	59802303	-	NGO1995	-	hypothetical protein
1831	 59.51	+1	1968688..1969218	+	176	59802304	-	NGO1996	-	hypothetical protein
1832	 58.15	0	1969311..1970426	-	371	59802305	-	NGO1997	-	aspartate-semialdehyde dehydrogenase
1833	 52.06	0	1970601..1971182	+	193	59802306	-	NGO1998	-	hypothetical protein
1834	 57.54	0	1971244..1972098	-	284	59802307	-	NGO1999	-	hypothetical protein
1835	 59.37	+1	1972738..1973244	+	168	59802308	-	NGO2000	-	putative transferase
1836	 60.54	+1	1973241..1975019	+	592	59802309	-	NGO2001	-	bifunctional biotin--[acetyl-CoA-carboxylase] ligase/pantothenate kinase
1837	 58.06	0	1975132..1975956	+	274	59802310	-	NGO2002	-	hypothetical protein
1838	 41.46	-1	1976165..1976287	-	40	59802311	-	NGO2003	-	hypothetical protein
1839	 59.07	0	1976422..1976658	+	78	59802312	-	NGO2004	-	hypothetical protein
1840	 61.98	+1	1976689..1977477	-	262	59802313	thiG	NGO2005	-	thiazole synthase
1841	 56.92	0	1977556..1977750	-	64	59802314	-	NGO2006	-	hypothetical protein
1842	 61.49	+1	1978172..1978789	-	205	59802315	-	NGO2007	-	putative thiamin-phosphate pyrophosphorylase
1843	 61.58	+1	1978811..1979911	-	366	59802316	-	NGO2008	-	putative oxidoreductase
1844	 59.66	+1	1979908..1981134	-	408	59802317	-	NGO2009	-	putative permease protein
1845	 61.88	+1	1981421..1982863	+	480	59802318	-	NGO2010	-	hypothetical protein
1846	 53.48	0	1983007..1983666	+	219	59802319	-	NGO2011	-	putative ABC transporter, permease protein, amino acid
1847	 53.96	0	1983656..1984324	+	222	59802320	-	NGO2012	-	putative ABC transporter, permease protein, amino acid
1848	 56.42	0	1984326..1985057	+	243	59802321	-	NGO2013	-	putative ABC transporter, ATP-binding protein, amino acid
1849	 56.26	0	1985170..1986024	+	284	59802322	-	NGO2014	-	putative ABC transporter, periplasmic binding protein, amino acid
1850	 57.34	0	1986403..1987260	+	285	59802323	-	NGO2015	-	hypothetical protein
1851	 58.68	0	1987346..1988734	+	462	59802324	-	NGO2016	-	hypothetical protein
1852	 54.67	0	1988735..1988959	+	74	59802325	-	NGO2017	-	hypothetical protein
1853	 47.69	0	1989067..1989261	+	64	59802326	-	NGO2018	-	hypothetical protein
1854	 63.16	+1	1989359..1990129	-	256	59802327	-	NGO2019	-	hypothetical protein
1855	 57.27	0	1990296..1992998	+	900	161572971	-	NGO2020	-	phosphoenolpyruvate carboxylase
1856	 56.97	0	1993121..1994110	+	329	59802329	-	NGO2021	-	putative glycerol-3-phosphate dehydrogenase
1857	 53.33	0	1994164..1994493	+	109	59802330	-	NGO2022	-	hypothetical protein
1858	 54.90	0	1994504..1994809	+	101	59802331	-	NGO2023	-	hypothetical protein
1859	 51.62	0	1995172..1995603	+	143	59802332	rplM	NGO2024	-	50S ribosomal protein L13
1860	 53.44	0	1995616..1996008	+	130	59802333	rpsI	NGO2025	-	30S ribosomal protein S9
1861	 24.04	-2	1996389..1996883	-	164	59802334	-	NGO2026	-	hypothetical protein
1862	 55.81	0	1997076..1998005	-	309	59802335	-	NGO2027	-	MetR
1863	 53.20	0	1998134..1998883	+	249	59802336	-	NGO2028	-	hypothetical protein
1864	 56.70	0	1999006..1999587	+	193	59802337	-	NGO2029	-	PetA
1865	 51.04	0	1999606..2000955	+	449	59802338	-	NGO2030	-	PetB
1866	 48.54	0	2000970..2001758	+	262	59802339	-	NGO2031	-	PetC
1867	 54.10	0	2002090..2003880	+	596	59802340	-	NGO2032	-	hypothetical protein
1868	 58.14	0	2003947..2004579	-	210	59802341	-	NGO2033	-	putative hydrolase
1869	 57.94	0	2004672..2005496	+	274	59802342	-	NGO2034	-	DNA ligase
1870	 53.19	0	2005565..2006128	+	187	59802343	-	NGO2035	-	hypoxanthine-guanine phosphoribosyltransferase
1871	 57.31	0	2006212..2006649	+	145	59802344	-	NGO2036	-	putative sugar transport PTS system IIA protein
1872	 54.07	0	2006870..2007139	+	89	59802345	-	NGO2037	-	PtsH
1873	 57.55	0	2007139..2008914	+	591	59802346	-	NGO2038	-	PtsI
1874	 58.81	0	2009041..2009982	-	313	59802347	-	NGO2039	-	putative ABC transporter, ATP-binding protein, amino acid
1875	 57.65	0	2009991..2010866	-	291	59802348	-	NGO2040	-	hypothetical protein
1876	 57.68	0	2011464..2013365	+	633	59802349	-	NGO2041	-	thiamine biosynthesis protein ThiC
1877	 51.80	0	2015247..2015468	+	73	59802350	-	NGO2042	-	hypothetical protein
1878	 58.10	0	2017051..2017365	+	104	59802351	-	NGO2043	-	putative dehydrogenase related protein
1879	 55.23	0	2017440..2019494	-	684	59802352	metG	NGO2044	-	methionyl-tRNA synthetase
1880	 58.35	0	2019610..2021448	-	612	59802353	-	NGO2045	-	D-fructose-6-phosphate amidotransferase
1881	 53.97	0	2021482..2021670	+	62	59802354	-	NGO2046	-	hypothetical protein
1882	 50.19	0	2021721..2022242	+	173	59802355	-	NGO2047	-	hypothetical protein
1883	 60.71	+1	2022525..2023850	-	441	59802356	-	NGO2048	-	GNA33)
1884	 54.50	0	2024900..2026066	+	388	59802357	-	NGO2050	-	hypothetical protein
1885	 58.77	0	2026373..2027638	+	421	59802358	-	NGO2051	-	hypothetical protein
1886	 54.24	0	2027710..2028039	-	109	59802359	-	NGO2052	-	PhnA
1887	 58.21	0	2028114..2029484	-	456	59802360	-	NGO2053	-	UDP-N-acetylglucosamine pyrophosphorylase
1888	 54.21	0	2029539..2029811	-	90	59802361	-	NGO2054	-	hypothetical protein
1889	 55.56	0	2029787..2030515	-	242	59802362	-	NGO2055	-	putative hydrolase
1890	 59.08	0	2030574..2031575	+	333	59802363	-	NGO2056	-	putative ABC transporter, thiamine-binding periplasmic protein
1891	 54.06	0	2031669..2032517	+	282	59802364	-	NGO2057	-	hypothetical protein
1892	 61.28	+1	2032543..2033025	+	160	59802365	-	NGO2058	-	hypothetical protein
1893	 55.07	0	2033109..2034677	-	522	59802366	-	NGO2059	-	trifunctional thioredoxin/methionine sulfoxide reductase A/B protein
1894	 56.95	0	2034823..2036088	+	421	59802367	-	NGO2060	-	putative signal recognition particle protein
1895	 53.90	0	2039365..2040288	-	307	59802368	lpxC	NGO2065	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
1896	 60.58	+1	2046714..2047403	-	229	59802369	-	NGO2068	-	hypothetical protein
1897	 55.38	0	2047400..2048143	-	247	59802370	-	NGO2069	-	NlaB
1898	 58.16	0	2048173..2048736	-	187	59802371	-	NGO2070	-	D,D-heptose 1,7-bisphosphate phosphatase
1899	 54.39	0	2048879..2050531	+	550	59802372	-	NGO2071	-	hypothetical protein
1900	 56.91	0	2050598..2051653	-	351	59802373	-	NGO2072	-	lipooligosaccharide glycosyl transferase G
1901	 58.13	0	2051805..2053046	-	413	59802374	-	NGO2073	-	TnaB
1902	 55.42	0	2053194..2053922	+	242	59802375	-	NGO2074	-	3-demethylubiquinone-9 3-methyltransferase
1903	 55.88	0	2053959..2054876	+	305	59802376	-	NGO2075	-	homoserine kinase
1904	 59.73	+1	2055062..2055580	-	172	59802377	-	NGO2076	-	putative glucokinase
1905	 60.25	+1	2055600..2056985	-	461	59802378	-	NGO2077	-	GntP
1906	 60.95	+1	2057326..2058918	+	530	59802379	-	NGO2078	-	putative ABC transporter, permease protein
1907	 55.00	0	2058947..2059546	+	199	59802380	-	NGO2079	-	putative carbonic anhydrase
52.66	MEAN

6.57	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.