IslandPath Analysis: Neisseria gonorrhoeae FA 1090



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.66   STD DEV: 6.57
Neisseria gonorrhoeae FA 1090, complete genome - 1..2153922
2002 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1760	 53.41	0	1898815..1899063	-	82	59802233	-	NGO1920	-	hypothetical protein
1761	 55.66	0	1899156..1900073	-	305	59802234	-	NGO1921	-	hypothetical protein
1762	 56.22	0	1900070..1900720	-	216	59802235	-	NGO1922	-	hypothetical protein
1763	 55.07	0	1900914..1901396	-	160	59802236	-	NGO1923	-	putative thioredoxin
1764	 51.98	0	1901520..1901873	+	117	59802237	-	NGO1924	-	ArsC
1765	 55.86	0	1901870..1902526	+	218	59802238	-	NGO1925	-	hypothetical protein
1766	 54.19	0	1902642..1904036	+	464	59802239	gltX	NGO1926	-	glutamyl-tRNA synthetase
1767	 51.26	0	1904057..1904452	+	131	59802240	-	NGO1927	-	hypothetical protein
1768	 48.58	0	1904456..1904947	+	163	59802241	-	NGO1928	-	putative acetyltransferase
1769	 50.39	0	1904953..1905081	+	42	59802242	-	NGO1929	-	hypothetical protein
1770	 55.84	0	1905223..1907817	-	864	59802243	-	NGO1930	-	DNA mismatch repair protein
1771	 55.72	0	1908251..1909255	+	334	59802244	-	NGO1931	-	GapC
1772	 54.04	0	1909407..1910087	-	226	59802245	-	NGO1932	-	hypothetical protein
1773	 46.38	0	1910547..1911182	+	211	59802246	-	NGO1933	-	hypothetical protein
1774	 46.65	0	1911219..1912187	+	322	59802247	-	NGO1934	-	RfaC
1775	 46.53	0	1912413..1913162	+	249	59802248	-	NGO1935	-	EtfB
1776	 48.08	0	1913173..1914108	+	311	59802249	-	NGO1936	-	EtfA
1777	 42.16	-1	1914832..1915035	-	67	59802250	-	NGO1938	-	hypothetical protein
1778	 50.31	0	1915307..1916578	+	423	59802251	-	NGO1939	-	phosphoribosylamine--glycine ligase
1779	 48.09	0	1916612..1917214	+	200	59802252	-	NGO1940	-	hypothetical protein
1780	 36.43	-2	1917229..1917744	+	171	59802253	-	NGO1941	-	hypothetical protein
1781	 41.84	-1	1917896..1918318	-	140	59802254	-	NGO1942	-	hypothetical protein
1782	 43.89	-1	1918568..1918747	-	59	59802255	-	NGO1943	-	hypothetical protein
1783	 47.96	0	1918753..1919340	-	195	59802256	-	NGO1944	-	RNA polymerase sigma factor
1784	 49.40	0	1919362..1920108	-	248	59802257	-	NGO1945	-	hypothetical protein
1785	 55.16	0	1920098..1920940	-	280	59802258	-	NGO1946	-	hypothetical protein
1786	 55.46	0	1921058..1921396	-	112	59802259	-	NGO1947	-	hypothetical protein
1787	 49.78	0	1921470..1921919	-	149	59802260	-	NGO1948	-	hypothetical protein
1788	 53.71	0	1922250..1923152	+	300	59802261	-	NGO1949	-	hypothetical protein
1789	 53.08	0	1923255..1924358	+	367	59802262	prfB	NGO1951	-	peptide chain release factor 2
1790	 58.22	0	1924516..1924728	-	70	59802263	-	NGO1952	-	hypothetical protein
1791	 49.81	0	1924854..1925114	-	86	59802264	-	NGO1953	-	hypothetical protein
1792	 54.66	0	1925126..1926583	-	485	59802265	-	NGO1954	-	putative peptide transporter
1793	 59.66	+1	1927364..1931533	-	1389	59802266	-	NGO1955	-	hypothetical protein
1794	 58.65	0	1931588..1933495	-	635	59802267	-	NGO1956	-	hypothetical protein
1795	 59.02	0	1933806..1935035	+	409	59802268	-	NGO1957	-	serine/threonine transporter SstT
1796	 53.49	0	1935186..1936475	+	429	59802269	-	NGO1958	-	hypothetical protein
1797	 59.31	+1	1936475..1936678	+	67	59802270	-	NGO1959	-	hypothetical protein
1798	 49.44	0	1936946..1937212	+	88	59802271	-	NGO1960	-	hypothetical protein
1799	 56.18	0	1937605..1938948	-	447	59802272	-	NGO1961	-	argininosuccinate synthase
1800	 57.05	0	1939073..1939873	+	266	59802273	-	NGO1962	-	hypothetical protein
1801	 57.55	0	1939913..1940899	+	328	59802274	-	NGO1963	-	putative protease
1802	 30.67	-2	1942504..1942878	-	124	59802275	-	NGO1965	-	hypothetical protein
1803	 28.85	-2	1943052..1943408	-	118	59802276	-	NGO1966	-	hypothetical protein
1804	 27.22	-2	1944697..1945056	-	119	59802277	-	NGO1967	-	hypothetical protein
1805	 26.67	-2	1947207..1947416	-	69	59802278	-	NGO1969	-	hypothetical protein
1806	 25.28	-2	1947493..1947852	-	119	59802279	-	NGO1970	-	hypothetical protein
1807	 45.62	-1	1947857..1949353	-	498	59802280	-	NGO1971	-	MafB5
1808	 48.49	0	1949393..1950355	-	320	59802281	-	NGO1972	-	MafA4
1809	 53.61	0	1950486..1951205	-	239	59802282	pyrH	NGO1973	-	uridylate kinase
1810	 51.35	0	1951422..1952276	-	284	59802283	tsf	NGO1974	-	elongation factor Ts
1811	 51.85	0	1952405..1953133	-	242	59802284	rpsB	NGO1975	-	30S ribosomal protein S2
1812	 56.84	0	1953306..1953539	-	77	59802285	-	NGO1976	-	hypothetical protein
1813	 57.88	0	1953539..1954198	+	219	59802286	-	NGO1977	-	hypothetical protein
1814	 54.65	0	1954259..1954849	+	196	59802287	-	NGO1978	-	hypothetical protein
1815	 56.99	0	1955233..1956699	+	488	59802288	-	NGO1980	-	malate:quinone oxidoreductase
1816	 50.98	0	1956886..1957446	-	186	59802289	-	NGO1981	-	hypothetical protein
1817	 45.67	-1	1957498..1957797	-	99	59802290	-	NGO1982	-	hypothetical protein
1818	 56.54	0	1957896..1958675	-	259	59802291	-	NGO1983	-	hypothetical protein
1819	 57.30	0	1958715..1959365	-	216	59802292	-	NGO1984	-	hypothetical protein
1820	 59.77	+1	1959373..1959981	-	202	59802293	-	NGO1985	-	hypothetical protein
1821	 59.60	+1	1960045..1960638	-	197	59802294	gmhA	NGO1986	-	phosphoheptose isomerase
1822	 51.44	0	1960643..1960990	-	115	59802295	-	NGO1987	-	hypothetical protein
1823	 57.31	0	1961037..1961912	+	291	59802296	-	NGO1988	-	hypothetical protein
1824	 51.70	0	1961935..1962756	+	273	59802297	-	NGO1989	-	hypothetical protein
1825	 57.84	0	1962756..1963910	+	384	59802298	obgE	NGO1990	-	GTPase ObgE
1826	 42.62	-1	1963964..1964911	+	315	59802299	-	NGO1991	-	NgoIM
1827	 38.08	-2	1964908..1965960	+	350	59802300	-	NGO1992	-	putative NgoI restriction endonuclease
1828	 56.61	0	1965976..1967397	+	473	59802301	-	NGO1993	-	hypothetical protein
1829	 53.85	0	1967568..1968347	+	259	59802302	-	NGO1994	-	putative exodeoxyribonuclease
1830	 54.49	0	1968334..1968678	+	114	59802303	-	NGO1995	-	hypothetical protein
1831	 59.51	+1	1968688..1969218	+	176	59802304	-	NGO1996	-	hypothetical protein
1832	 58.15	0	1969311..1970426	-	371	59802305	-	NGO1997	-	aspartate-semialdehyde dehydrogenase
1833	 52.06	0	1970601..1971182	+	193	59802306	-	NGO1998	-	hypothetical protein
1834	 57.54	0	1971244..1972098	-	284	59802307	-	NGO1999	-	hypothetical protein
1835	 59.37	+1	1972738..1973244	+	168	59802308	-	NGO2000	-	putative transferase
1836	 60.54	+1	1973241..1975019	+	592	59802309	-	NGO2001	-	bifunctional biotin--[acetyl-CoA-carboxylase] ligase/pantothenate kinase
1837	 58.06	0	1975132..1975956	+	274	59802310	-	NGO2002	-	hypothetical protein
1838	 41.46	-1	1976165..1976287	-	40	59802311	-	NGO2003	-	hypothetical protein
1839	 59.07	0	1976422..1976658	+	78	59802312	-	NGO2004	-	hypothetical protein
1840	 61.98	+1	1976689..1977477	-	262	59802313	thiG	NGO2005	-	thiazole synthase
1841	 56.92	0	1977556..1977750	-	64	59802314	-	NGO2006	-	hypothetical protein
1842	 61.49	+1	1978172..1978789	-	205	59802315	-	NGO2007	-	putative thiamin-phosphate pyrophosphorylase
1843	 61.58	+1	1978811..1979911	-	366	59802316	-	NGO2008	-	putative oxidoreductase
1844	 59.66	+1	1979908..1981134	-	408	59802317	-	NGO2009	-	putative permease protein
1845	 61.88	+1	1981421..1982863	+	480	59802318	-	NGO2010	-	hypothetical protein
1846	 53.48	0	1983007..1983666	+	219	59802319	-	NGO2011	-	putative ABC transporter, permease protein, amino acid
1847	 53.96	0	1983656..1984324	+	222	59802320	-	NGO2012	-	putative ABC transporter, permease protein, amino acid
1848	 56.42	0	1984326..1985057	+	243	59802321	-	NGO2013	-	putative ABC transporter, ATP-binding protein, amino acid
1849	 56.26	0	1985170..1986024	+	284	59802322	-	NGO2014	-	putative ABC transporter, periplasmic binding protein, amino acid
1850	 57.34	0	1986403..1987260	+	285	59802323	-	NGO2015	-	hypothetical protein
1851	 58.68	0	1987346..1988734	+	462	59802324	-	NGO2016	-	hypothetical protein
1852	 54.67	0	1988735..1988959	+	74	59802325	-	NGO2017	-	hypothetical protein
1853	 47.69	0	1989067..1989261	+	64	59802326	-	NGO2018	-	hypothetical protein
1854	 63.16	+1	1989359..1990129	-	256	59802327	-	NGO2019	-	hypothetical protein
1855	 57.27	0	1990296..1992998	+	900	161572971	-	NGO2020	-	phosphoenolpyruvate carboxylase
1856	 56.97	0	1993121..1994110	+	329	59802329	-	NGO2021	-	putative glycerol-3-phosphate dehydrogenase
1857	 53.33	0	1994164..1994493	+	109	59802330	-	NGO2022	-	hypothetical protein
1858	 54.90	0	1994504..1994809	+	101	59802331	-	NGO2023	-	hypothetical protein
1859	 51.62	0	1995172..1995603	+	143	59802332	rplM	NGO2024	-	50S ribosomal protein L13
52.66	MEAN

6.57	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.