IslandPathversion 1.0

IslandPath Analysis: Neisseria gonorrhoeae FA 1090



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.66 STD DEV: 6.57
Neisseria gonorrhoeae FA 1090, complete genome - 1..2153922
2002 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
124	 53.33	0	147480..148109	-	209	59800597	-	NGO0139	-	putative endonuclease III
125	 57.91	0	148156..148692	-	178	59800598	-	NGO0140	-	hypothetical protein
126	 39.46	-2	148719..148865	+	48	59800599	-	NGO0141	-	hypothetical protein
127	 52.69	0	148948..150228	+	426	59800600	-	NGO0142	-	putative sugar transporter
128	 54.78	0	150518..151897	+	459	59800601	-	NGO0143	-	hypothetical protein
129	 55.27	0	152040..152864	-	274	59800602	-	NGO0144	-	hypothetical protein
130	 51.26	0	152866..153501	-	211	59800603	-	NGO0145	-	hypothetical protein
131	 56.52	0	153500..154435	+	311	59800604	hemC	NGO0146	-	porphobilinogen deaminase
132	 56.08	0	156345..157430	-	361	59800605	-	NGO0147	-	hypothetical protein
133	 58.80	0	157367..157582	-	71	59800606	-	NGO0148	-	hypothetical protein
134	 58.30	0	157762..159135	-	457	59800607	-	NGO0149	-	putative ATP-dependent RNA helicase
135	 54.50	0	159159..159347	-	62	59800608	-	NGO0150	-	hypothetical protein
136	 60.90	+1	159349..160353	+	334	59800609	-	NGO0151	-	hypothetical protein
137	 50.61	0	160452..160781	+	109	59800610	-	NGO0152	-	hypothetical protein
138	 60.89	+1	160784..161320	+	178	161572978	ruvC	NGO0153	-	Holliday junction resolvase
139	 50.80	0	161371..162240	+	289	59800612	-	NGO0154	-	lipid A biosynthesis lauroyl acyltransferase
140	 54.07	0	162894..163028	+	44	59800613	-	NGO0155	-	hypothetical protein
141	 54.59	0	163144..163938	+	264	59800614	-	NGO0156	-	hypothetical protein
142	 57.45	0	164163..166766	+	867	59800615	-	NGO0158	-	putative aminopeptidase N
143	 41.67	-1	167614..167805	-	63	59800616	-	NGO0160	-	hypothetical protein
144	 25.21	-2	167838..168305	-	155	59800617	-	NGO0161	-	hypothetical protein
145	 40.42	-1	168362..168742	-	126	59800618	-	NGO0162	-	hypothetical protein
146	 30.42	-2	168745..169122	-	125	59800619	-	NGO0163	-	hypothetical protein
147	 36.07	-2	169180..169545	-	121	59800620	-	NGO0164	-	hypothetical protein
148	 47.59	0	169527..170066	-	179	59800621	-	NGO0165	-	hypothetical protein
149	 51.79	0	170109..170975	-	288	59800622	-	NGO0166	-	hypothetical protein
150	 31.48	-2	171011..171226	+	71	59800623	-	NGO0167	-	hypothetical protein
151	 54.48	0	171195..172121	-	308	59800624	-	NGO0168	-	MntC
152	 58.09	0	172198..173025	-	275	59800625	-	NGO0169	-	putative ABC transporter, membrane protein
153	 52.91	0	173108..173863	-	251	59800626	-	NGO0170	-	putative ABC transporter, ATP-binding protein
154	 54.10	0	174154..174519	-	121	59800627	rplS	NGO0171	-	50S ribosomal protein L19
155	 52.53	0	174534..175283	-	249	59800628	-	NGO0172	-	putative tRNA (guanine-N1)-methyltransferase
156	 51.18	0	175283..175792	-	169	59800629	rimM	NGO0173	-	16S rRNA-processing protein
157	 55.69	0	175808..176053	-	81	59800630	rpsP	NGO0174	-	30S ribosomal protein S16
158	 52.67	0	178639..180045	-	468	59800631	-	NGO0176	-	putative two-component system sensor kinase
159	 56.49	0	180058..180735	-	225	59800632	-	NGO0177	-	putative two-component system transcriptional response regulator
160	 56.09	0	180925..182739	-	604	59800633	-	NGO0178	-	hypothetical protein
161	 49.72	0	182729..183082	-	117	59800634	-	NGO0179	-	hypothetical protein
162	 54.94	0	183091..183738	-	215	59800635	-	NGO0180	-	hypothetical protein
163	 53.57	0	183743..184513	-	256	59800636	-	NGO0181	-	putative sec-independent protein translocase component
164	 55.02	0	184526..185212	-	228	59800637	-	NGO0182	-	putative sec-independent protein translocase component
165	 46.08	-1	185216..185419	-	67	59800638	-	NGO0183	-	hypothetical protein
166	 50.62	0	185466..185789	-	107	59800639	-	NGO0184	-	HitA
167	 52.78	0	185863..186186	-	107	59800640	-	NGO0185	-	putative phosphoribosyl-ATP cyclohydrolase
168	 56.06	0	186327..187391	-	354	59800641	-	NGO0186	-	putative zinc-binding alcohol dehydrogenas
169	 58.36	0	188256..189374	-	372	59800642	-	NGO0187	-	hypothetical protein
170	 48.31	0	189505..189771	+	88	59800643	-	NGO0188	-	hypothetical protein
171	 52.93	0	189979..191835	+	618	59800644	secD	NGO0189	-	preprotein translocase subunit SecD
172	 48.93	0	191839..192774	+	311	59800645	secF	NGO0190	-	preprotein translocase subunit SecF
173	 52.96	0	192979..193248	+	89	59800646	rpsO	NGO0191	-	30S ribosomal protein S15
174	 49.57	0	193358..194650	+	430	59800647	-	NGO0192	-	putative ABC transporter, ATP-binding protein, polyamine
175	 48.34	0	194984..195949	+	321	59800648	-	NGO0195	-	putative ABC transporter, permease protein, polyamine
176	 51.13	0	195949..196836	+	295	59800649	-	NGO0196	-	putative ABC transporter, permease protein, polyamine
177	 52.11	0	196858..198258	+	466	59800650	-	NGO0197	-	putative oxidoreductase
178	 56.85	0	198352..199818	-	488	59800651	-	NGO0198	-	putative transporter, ammonium
179	 54.21	0	200272..201531	-	419	59800652	rho	NGO0199	-	transcription termination factor Rho
180	 55.14	0	201752..204136	-	794	59800653	-	NGO0200	-	phosphoenolpyruvate synthase
181	 55.20	0	204491..205144	+	217	59800654	-	NGO0201	-	IS1016 transposase
182	 54.26	0	205270..206091	+	273	59800655	-	NGO0202	-	hypothetical protein
183	 59.07	0	206177..206887	-	236	59800656	-	NGO0203	-	putative phosphatase
184	 59.30	+1	206877..207704	-	275	59800657	-	NGO0204	-	hypothetical protein
185	 57.05	0	208087..208710	+	207	59800658	-	NGO0205	-	LolA
186	 55.15	0	208983..210119	+	378	59800659	-	NGO0206	-	putative ABC transporter, periplasmic binding protein, polyamine
187	 30.69	-2	210214..211197	+	327	59800660	-	NGO0207	-	putative sugar transferase
188	 57.06	0	211238..211768	+	176	59800661	-	NGO0208	-	hypothetical protein
189	 55.33	0	211936..213531	-	531	59800662	prfC	NGO0209	-	peptide chain release factor 3
190	 53.54	0	213638..214033	-	131	59800663	-	NGO0210	-	phosphoribosyl-AMP cyclohydrolase
191	 61.46	+1	214064..214831	-	255	59800664	-	NGO0211	-	imidazole glycerol phosphate synthase subunit HisF
192	 59.08	0	214844..215581	-	245	59800665	-	NGO0212	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
193	 54.93	0	215614..216252	-	212	59800666	hisH	NGO0213	-	imidazole glycerol phosphate synthase subunit HisH
194	 59.95	+1	216382..217884	-	500	59800667	-	NGO0214	-	putative phosphotransacetylase
195	 60.81	+1	218069..219127	-	352	59800668	-	NGO0215	-	ABC transporter, ATP-binding protein, iron related
196	 52.03	0	219148..220677	-	509	59800669	-	NGO0216	-	ABC transporter, permease protein, iron related
197	 55.82	0	220733..221728	-	331	59800670	-	NGO0217	-	ABC transporter, periplasmic binding protein, iron related
198	 52.92	0	222119..222460	-	113	59800671	-	NGO0218	-	hypothetical protein
199	 57.44	0	222518..223894	-	458	59800672	-	NGO0219	-	argininosuccinate lyase
200	 57.01	0	223913..224782	-	289	59800673	-	NGO0220	-	putative UTP--glucose-1-phosphate uridylyltransferase
201	 57.17	0	224810..225409	-	199	59800674	-	NGO0221	-	putative deoxyribonucleotide triphosphate pyrophosphatase
202	 56.84	0	225402..225635	-	77	59800675	-	NGO0222	-	hypothetical protein
203	 53.18	0	225743..226276	-	177	59800676	-	NGO0223	-	inorganic pyrophosphatase
204	 59.48	+1	226378..226836	-	152	59800677	ntpA	NGO0224	-	dATP pyrophosphohydrolase
205	 50.98	0	227386..229272	+	628	59800678	-	NGO0225	-	MafB1
206	 31.44	-2	229300..229722	+	140	59800679	-	NGO0226	-	hypothetical protein
207	 44.72	-1	230200..230445	+	81	59800680	-	NGO0227	-	hypothetical protein
208	 31.78	-2	230448..230834	+	128	59800681	-	NGO0228	-	hypothetical protein
209	 33.59	-2	231055..231444	+	129	59800682	-	NGO0229	-	hypothetical protein
210	 58.98	0	231484..232941	-	485	59800683	-	NGO0230	-	putative transport protein, potassium
211	 58.60	0	232956..233786	-	276	59800684	apaH	NGO0231	-	diadenosine tetraphosphatase
212	 62.05	+1	233863..234252	-	129	59800685	-	NGO0232	-	hypothetical protein
213	 58.52	0	234399..234926	-	175	59800686	-	NGO0233	-	outer membrane protein
214	 55.44	0	235369..236544	-	391	59800687	-	NGO0234	-	coproporphyrinogen III oxidase
215	 59.71	+1	236601..239072	-	823	59800688	-	NGO0235	-	putative DNA ligase
216	 56.64	0	239206..240492	-	428	59800689	-	NGO0236	-	hypothetical protein
217	 58.99	0	240686..241258	-	190	59800690	-	NGO0237	-	N-acetyl-anhydromuranmyl-L-alanine amidase
218	 55.80	0	241342..242289	+	315	59800691	-	NGO0238	-	hypothetical protein
219	 58.13	0	242398..243018	+	206	59800692	tdk	NGO0239	-	thymidylate kinase
220	 54.80	0	243240..244520	+	426	59800693	-	NGO0240	-	putative malic enzyme, malate dehydrogenase/oxaloacetate-decarboxylating
221	 45.59	-1	244633..244836	+	67	59800694	-	NGO0241	-	hypothetical protein
222	 56.30	0	244922..245953	+	343	59800695	lpxK	NGO0242	-	tetraacyldisaccharide 4'-kinase
223	 48.31	0	246159..246692	+	177	59800696	-	NGO0243	-	hypothetical protein
52.66	MEAN

6.57	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.