IslandPathversion 1.0

IslandPath Analysis: Neisseria gonorrhoeae FA 1090



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.66 STD DEV: 6.57
Neisseria gonorrhoeae FA 1090, complete genome - 1..2153922
2002 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1595	 54.85	0	1709149..1709622	-	157	59802068	-	NGO1747	-	NADH dehydrogenase subunit E
1596	 55.77	0	1709622..1710878	-	418	59802069	-	NGO1748	-	NADH dehydrogenase subunit D
1597	 51.01	0	1710868..1711461	-	197	59802070	-	NGO1749	-	NADH dehydrogenase subunit C
1598	 55.69	0	1711474..1711956	-	160	59802071	-	NGO1750	-	NADH dehydrogenase subunit B
1599	 50.42	0	1711947..1712303	-	118	59802072	-	NGO1751	-	hypothetical protein
1600	 48.59	0	1712796..1714283	-	495	59802073	-	NGO1752	-	hypothetical protein
1601	 47.50	0	1714270..1714890	-	206	59802074	-	NGO1753	-	hypothetical protein
1602	 40.80	-1	1715118..1715465	-	115	59802075	-	NGO1754	-	MafI protein
1603	 50.25	0	1715638..1715838	-	66	59802076	-	NGO1755	-	hypothetical protein
1604	 58.10	0	1716172..1716486	-	104	59802077	-	NGO1756	-	hypothetical protein
1605	 57.93	0	1716628..1718835	-	735	59802078	-	NGO1757	-	hypothetical protein
1606	 58.05	0	1719259..1721949	-	896	59802079	-	NGO1758	-	GlnE
1607	 43.15	-1	1722143..1722478	-	111	59802080	-	NGO1759	-	hypothetical protein
1608	 41.35	-1	1722492..1722965	-	157	59802081	-	NGO1760	-	hypothetical protein
1609	 55.36	0	1723162..1724169	-	335	59802082	-	NGO1761	-	dihydroorotate dehydrogenase 2
1610	 47.26	0	1724401..1724637	+	78	59802083	-	NGO1762	-	hypothetical protein
1611	 60.18	+1	1724794..1726041	+	415	59802084	-	NGO1763	-	3-oxoacyl-(acyl carrier protein) synthase II
1612	 46.68	0	1728025..1729155	+	376	59802085	-	NGO1765	-	PglA
1613	 57.62	0	1730757..1732271	+	504	59802086	-	NGO1767	-	KatA
1614	 55.20	0	1732787..1733353	+	188	59802087	-	NGO1768	-	hypothetical protein
1615	 53.01	0	1733575..1734738	+	387	59802088	-	NGO1769	-	CcpR
1616	 57.14	0	1735319..1737355	-	678	59802089	-	NGO1770	-	PrlC
1617	 56.29	0	1737443..1738435	-	330	59802090	-	NGO1771	-	hypothetical protein
1618	 56.46	0	1738581..1740971	+	796	59802091	gyrB	NGO1772	-	DNA gyrase subunit B
1619	 60.25	+1	1741070..1742455	+	461	59802092	-	NGO1773	-	hypothetical protein
1620	 55.86	0	1743699..1745651	-	650	59802093	-	NGO1774	-	putative potassium-efflux system protein
1621	 64.88	+1	1745797..1746636	+	279	59802094	-	NGO1775	-	putative ferredoxin
1622	 57.56	0	1746835..1747866	+	343	59802095	-	NGO1776	-	glyceraldehyde-3-phosphate dehydrogenase
1623	 45.91	-1	1747904..1748062	+	52	59802096	-	NGO1777	-	hypothetical protein
1624	 58.40	0	1748121..1748846	-	241	59802097	aat	NGO1778	-	leucyl/phenylalanyl-tRNA--protein transferase
1625	 53.56	0	1748916..1749350	-	144	59802098	-	NGO1779	-	hypothetical protein
1626	 58.47	0	1749577..1749954	+	125	59802099	-	NGO1780	-	hypothetical protein
1627	 61.85	+1	1749964..1750773	+	269	59802100	-	NGO1781	-	dihydrodipicolinate reductase
1628	 58.57	0	1751413..1752585	-	390	59802101	-	NGO1782	-	LpxB
1629	 57.70	0	1752736..1753728	-	330	59802102	-	NGO1783	-	RluC
1630	 56.86	0	1753810..1754115	-	101	59802103	-	NGO1784	-	hypothetical protein
1631	 59.96	+1	1754221..1756980	+	919	59802104	-	NGO1785	-	Rne
1632	 61.43	+1	1757210..1758202	-	330	59802105	-	NGO1786	-	PdxA
1633	 55.88	0	1758361..1759788	+	475	59802106	-	NGO1787	-	putative amino-acid transport protein
1634	 58.08	0	1759970..1761856	+	628	59802107	-	NGO1788	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
1635	 57.78	0	1761924..1762508	+	194	59802108	-	NGO1789	-	hypothetical protein
1636	 60.08	+1	1763256..1764029	-	257	59802109	-	NGO1790	-	putative parA family protein - putative ATPase
1637	 58.81	0	1764129..1764752	-	207	59802110	gidB	NGO1791	-	glucose-inhibited division protein B
1638	 59.55	+1	1764847..1765422	-	191	59802111	-	NGO1792	-	hypothetical protein
1639	 60.89	+1	1765476..1766705	+	409	59802112	-	NGO1793	-	hypothetical protein
1640	 47.08	0	1767623..1768648	+	341	59802113	-	NGO1795	-	DcmB
1641	 55.20	0	1768790..1769347	+	185	59802114	-	NGO1796	-	Rrf
1642	 54.22	0	1769403..1770149	+	248	59802115	-	NGO1797	-	putative undecaprenyl diphosphate synthase
1643	 57.27	0	1770152..1770949	+	265	59802116	-	NGO1798	-	putative phosphatidate cytidylyltransferase
1644	 57.97	0	1771005..1772189	+	394	59802117	-	NGO1799	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
1645	 59.13	0	1772224..1773564	+	446	59802118	-	NGO1800	-	hypothetical protein
1646	 56.79	0	1773621..1775999	+	792	59802119	-	NGO1801	-	hypothetical protein
1647	 53.76	0	1776008..1776565	+	185	59802120	-	NGO1802	-	hypothetical protein
1648	 60.44	+1	1776598..1777641	+	347	59802121	lpxD	NGO1803	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
1649	 56.22	0	1777677..1778126	+	149	59802122	fabZ	NGO1804	-	(3R)-hydroxymyristoyl-ACP dehydratase
1650	 35.23	-2	1778333..1779019	+	228	59802123	-	NGO1805	-	hypothetical protein
1651	 58.56	0	1779062..1779838	+	258	59802124	-	NGO1806	-	UDP-N-acetylglucosamine acyltransferase
1652	 54.09	0	1780301..1781692	+	463	59802125	-	NGO1807	-	putative amino-acid transporter
1653	 55.08	0	1781771..1783030	+	419	59802126	-	NGO1808	-	D-amino acid dehydrogenase small subunit
1654	 56.31	0	1783135..1785972	+	945	59802127	valS	NGO1809	-	valyl-tRNA synthetase
1655	 48.17	0	1786049..1786513	+	154	59802128	-	NGO1810	-	hypothetical protein
1656	 62.28	+1	1787384..1788181	+	265	59802129	truA	NGO1811	-	tRNA pseudouridine synthase A
1657	 52.63	0	1788698..1789744	+	348	59802130	-	NGO1812	-	major outer membrane protein porin P.IB
1658	 53.20	0	1790265..1791185	-	306	59802131	-	NGO1813	-	LysR family transcriptional regulator
1659	 44.32	-1	1791189..1791452	-	87	59802132	-	NGO1814	-	hypothetical protein
1660	 44.82	-1	1792300..1793013	-	237	59802133	minC	NGO1816	-	septum formation inhibitor
1661	 46.34	0	1793160..1793528	-	122	59802134	rplQ	NGO1817	-	50S ribosomal protein L17
1662	 42.35	-1	1793552..1794538	-	328	59802135	-	NGO1818	-	DNA-directed RNA polymerase subunit alpha
1663	 43.80	-1	1794564..1795184	-	206	59802136	rpsD	NGO1819	-	30S ribosomal protein S4
1664	 45.20	-1	1795204..1795599	-	131	59802137	-	NGO1820	-	30S ribosomal protein S11
1665	 45.45	-1	1795619..1795981	-	120	59802138	rpsM	NGO1821	-	30S ribosomal protein S13
1666	 37.90	-2	1796181..1796399	-	72	59802139	infA	NGO18211	-	translation initiation factor IF-1
1667	 37.15	-2	1796404..1797714	-	436	59802140	secY	NGO1822	-	preprotein translocase subunit SecY
1668	 42.53	-1	1797726..1798160	-	144	59802141	rplO	NGO1823	-	50S ribosomal protein L15
1669	 40.86	-1	1798162..1798347	-	61	59802142	rpmD	NGO18231	-	50S ribosomal protein L30
1670	 43.74	-1	1798340..1798858	-	172	59802143	rpsE	NGO1824	-	30S ribosomal protein S5
1671	 43.50	-1	1798877..1799230	-	117	59802144	rplR	NGO18241	-	50S ribosomal protein L18
1672	 40.82	-1	1799244..1799777	-	177	59802145	rplF	NGO1825	-	50S ribosomal protein L6
1673	 39.44	-2	1799791..1800183	-	130	59802146	rpsH	NGO1826	-	30S ribosomal protein S8
1674	 46.08	-1	1800199..1800504	-	101	59802147	rpsN	NGO18261	-	30S ribosomal protein S14
1675	 38.89	-2	1800507..1801046	-	179	59802148	rplE	NGO1827	-	50S ribosomal protein L5
1676	 38.27	-2	1801056..1801379	-	107	59802149	rplX	NGO1828	-	50S ribosomal protein L24
1677	 44.44	-1	1801391..1801759	-	122	59802150	rplN	NGO1829	-	50S ribosomal protein L14
1678	 35.61	-2	1801981..1802244	-	87	59802151	rpsQ	NGO1830	-	30S ribosomal protein S17
1679	 38.54	-2	1802244..1802435	-	63	59802152	-	NGO1831	-	50S ribosomal protein L29
1680	 47.00	0	1802435..1802851	-	138	59802153	rplP	NGO18311	-	50S ribosomal protein L16
1681	 44.30	-1	1802835..1803527	-	230	59802154	rpsC	NGO1832	-	30S ribosomal protein S3
1682	 41.82	-1	1803537..1803866	-	109	59802155	rplV	NGO1833	-	50S ribosomal protein L22
1683	 45.16	-1	1803875..1804153	-	92	59802156	rpsS	NGO1834	-	30S ribosomal protein S19
1684	 51.08	0	1804159..1804992	-	277	59802157	rplB	NGO1835	-	50S ribosomal protein L2
1685	 42.99	-1	1804998..1805318	-	106	59802158	rplW	NGO1836	-	50S ribosomal protein L23
1686	 47.34	0	1805309..1805929	-	206	59802159	rplD	NGO1837	-	50S ribosomal protein L4
1687	 50.54	0	1805929..1806573	-	214	59802160	rplC	NGO1838	-	50S ribosomal protein L3
1688	 45.31	-1	1806791..1806982	-	63	59802161	-	NGO1839	-	hypothetical protein
1689	 46.47	0	1807359..1807670	-	103	59802162	rpsJ	NGO1841	-	30S ribosomal protein S10
1690	 53.08	0	1807688..1808872	-	394	59802163	-	NGO1842	-	elongation factor Tu
1691	 49.67	0	1808960..1811065	-	701	59802164	-	NGO1843	-	elongation factor G
1692	 49.68	0	1811084..1811554	-	156	59802165	-	NGO1844	-	30S ribosomal protein S7
1693	 50.54	0	1811672..1812043	-	123	59802166	rpsL	NGO1845	-	30S ribosomal protein S12
1694	 42.00	-1	1812222..1812371	-	49	59802167	-	NGO1846	-	hypothetical protein
52.66	MEAN

6.57	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.