IslandPath Analysis: Neisseria gonorrhoeae FA 1090



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.66   STD DEV: 6.57
Neisseria gonorrhoeae FA 1090, complete genome - 1..2153922
2002 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1511	 55.91	0	1612963..1613241	-	92	59801984	-	NGO1657	-	hypothetical protein
1512	 54.64	0	1613241..1613531	-	96	59801985	-	NGO1658	-	YciI-like protein
1513	 46.89	0	1613534..1614064	-	176	59801986	-	NGO1659	-	hypothetical protein
1514	 53.50	0	1617306..1618475	-	389	59801987	-	NGO1662	-	hypothetical protein
1515	 51.75	0	1618486..1618800	-	104	59801988	-	NGO1663	-	hypothetical protein
1516	 45.76	-1	1618903..1619079	+	58	59801989	-	NGO1664	-	hypothetical protein
1517	 56.36	0	1619110..1620108	+	332	59801990	-	NGO1665	-	branched-chain amino acid aminotransferase
1518	 57.76	0	1620353..1621138	-	261	59801991	-	NGO1666	-	enoyl-(acyl carrier protein) reductase
1519	 57.66	0	1621293..1622114	-	273	59801992	dapD	NGO1667	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
1520	 59.31	+1	1622324..1623967	-	547	59801993	-	NGO1668	-	glucose-6-phosphate isomerase
1521	 52.64	0	1624476..1625708	+	410	59801994	-	NGO1669	-	PilG
1522	 53.77	0	1625782..1626642	+	286	59801995	-	NGO1670	-	PilD
1523	 55.95	0	1626600..1627271	+	223	59801996	-	NGO1671	-	hypothetical protein
1524	 50.94	0	1627156..1627473	+	105	59801997	-	NGO1672	-	hypothetical protein
1525	 52.53	0	1627559..1629235	-	558	59801998	-	NGO1673	-	PilF
1526	 50.78	0	1629573..1630019	-	148	59801999	-	NGO1674	-	hypothetical protein
1527	 51.38	0	1630023..1630997	-	324	59802000	-	NGO1675	-	IspB
1528	 48.22	0	1631221..1631529	+	102	59802001	rplU	NGO1676	-	50S ribosomal protein L21
1529	 51.65	0	1631554..1631826	+	90	59802002	rpmA	NGO1677	-	50S ribosomal protein L27
1530	 52.74	0	1632061..1633245	+	394	59802003	-	NGO1678	-	hypothetical protein
1531	 43.59	-1	1633434..1633589	-	51	59802004	rpmG	NGO1679	-	50S ribosomal protein L33
1532	 51.28	0	1633621..1633854	-	77	59802005	rpmB	NGO1680	-	50S ribosomal protein L28
1533	 48.15	0	1633926..1634114	-	62	59802006	-	NGO1681	-	hypothetical protein
1534	 55.31	0	1634104..1635627	-	507	59802007	-	NGO1682	-	efflux pump protein, fatty acid resistance
1535	 59.83	+1	1635651..1636835	-	394	59802008	-	NGO1683	-	efflux pump protein, fatty acid resistance
1536	 52.11	0	1637094..1637567	+	157	59802009	-	NGO1684	-	7-cyano-7-deazaguanine reductase
1537	 54.29	0	1637642..1638328	+	228	59802010	-	NGO1685	-	hypothetical protein
1538	 61.25	+1	1638678..1639970	-	430	59802011	-	NGO1686	-	hypothetical protein
1539	 57.67	0	1639882..1641015	+	377	59802012	-	NGO1687	-	hypothetical protein
1540	 55.31	0	1641216..1642685	-	489	59802013	-	NGO1688	-	putative outer membrane protein OmpU
1541	 49.59	0	1644374..1644619	-	81	59802014	-	NGO1690	-	hypothetical protein
1542	 44.22	-1	1644588..1644734	+	48	59802015	-	NGO1691	-	hypothetical protein
1543	 55.02	0	1644722..1645159	+	145	59802016	-	NGO1692	-	hypothetical protein
1544	 51.57	0	1645171..1645647	+	158	59802017	-	NGO1693	-	hypothetical protein
1545	 54.81	0	1645677..1646165	-	162	59802018	-	NGO1694	-	hypothetical protein
1546	 53.79	0	1646233..1647288	-	351	59802019	-	NGO1695	-	phospho-2-dehydro-3-deoxyheptonate aldolase
1547	 51.55	0	1655425..1656231	-	268	59802020	-	NGO1699	-	hypothetical protein
1548	 51.64	0	1656451..1657821	+	456	59802021	-	NGO1700	-	putative signal recognition particle protein
1549	 60.31	+1	1658077..1658532	+	151	59802022	-	NGO1701	-	hypothetical protein
1550	 51.81	0	1658587..1659111	-	174	59802023	-	NGO1702	-	hypothetical protein
1551	 46.63	0	1659056..1660018	+	320	59802024	-	NGO1703	-	Irg8
1552	 48.99	0	1660138..1660335	-	65	59802025	-	NGO1704	-	hypothetical protein
1553	 54.89	0	1660384..1660782	-	132	59802026	-	NGO1705	-	hypothetical protein
1554	 59.98	+1	1660890..1661801	+	303	59802027	-	NGO1706	-	LysR family transcriptional regulator
1555	 62.82	+1	1661791..1663089	+	432	59802028	-	NGO1707	-	putative deoxyribodopyrimidine photolyase
1556	 58.16	0	1663270..1665420	+	716	59802029	dinG	NGO1708	-	ATP-dependent DNA helicase DinG
1557	 57.24	0	1665456..1666070	+	204	59802030	-	NGO1709	-	hypothetical protein
1558	 49.17	0	1666206..1668074	-	622	59802031	-	NGO1710	-	putative trans-acylase protein
1559	 56.16	0	1668154..1669524	-	456	59802032	-	NGO1711	-	adenylosuccinate lyase
1560	 58.45	0	1669596..1670228	-	210	59802033	-	NGO1712	-	hypothetical protein
1561	 56.29	0	1670357..1672264	+	635	59802034	-	NGO1713	-	hypothetical protein
1562	 59.28	+1	1672744..1673745	-	333	59802035	-	NGO1714	-	putative cis-trans isomerase
1563	 59.23	0	1673847..1676252	-	801	59802036	-	NGO1715	-	OstA
1564	 56.22	0	1676322..1677326	+	334	59802037	-	NGO1716	-	hypothetical protein
1565	 57.16	0	1677383..1678087	-	234	59802038	-	NGO1717	-	putative thiol:disulphide interchange protein
1566	 55.36	0	1678525..1680063	+	512	59802039	-	NGO1718	-	hypothetical protein
1567	 61.77	+1	1680196..1681155	+	319	59802040	-	NGO1719	-	hypothetical protein
1568	 48.65	0	1681152..1681262	-	36	59802041	-	NGO1720	-	hypothetical protein
1569	 58.75	0	1681206..1681988	+	260	59802042	-	NGO1721	-	indole-3-glycerol-phosphate synthase
1570	 57.60	0	1682051..1684354	+	767	59802043	-	NGO1722	-	RecQ
1571	 51.61	0	1684391..1685692	-	433	59802044	-	NGO1723	-	hypothetical protein
1572	 59.44	+1	1686074..1686862	-	262	59802045	-	NGO1724	-	hypothetical protein
1573	 59.59	+1	1686859..1687635	-	258	59802046	-	NGO1725	-	putative bioH - biotin biosynthesis protein
1574	 57.30	0	1687607..1688332	+	241	59802047	-	NGO1726	-	hypothetical protein
1575	 59.78	+1	1688397..1688861	+	154	59802048	-	NGO1727	-	hypothetical protein
1576	 57.79	0	1688989..1689675	+	228	59802049	-	NGO1728	-	hypothetical protein
1577	 59.63	+1	1689736..1690062	+	108	59802050	-	NGO1729	-	hypothetical protein
1578	 56.75	0	1690144..1690728	+	194	59802051	ruvA	NGO1730	-	Holliday junction DNA helicase motor protein
1579	 58.70	0	1690728..1690865	+	45	59802052	-	NGO1731	-	hypothetical protein
1580	 59.29	+1	1690892..1692748	+	618	59802053	-	NGO1732	-	putative ABC transporter, ATP-binding protein
1581	 61.15	+1	1692753..1693676	+	307	59802054	-	NGO1733	-	ribosome-associated GTPase
1582	 53.33	0	1693789..1694013	+	74	59802055	-	NGO1734	-	putative exodeoxyribonuclease VII small subunit
1583	 58.97	0	1693997..1694893	+	298	59802056	-	NGO1735	-	hypothetical protein
1584	 57.26	0	1695010..1695360	-	116	59802057	-	NGO1736	-	hypothetical protein
1585	 56.15	0	1695421..1696866	-	481	59802058	-	NGO1737	-	NADH dehydrogenase subunit N
1586	 53.17	0	1696876..1698372	-	498	59802059	-	NGO1738	-	NADH dehydrogenase subunit M
1587	 34.19	-2	1698486..1699649	-	387	59802060	-	NGO1739	-	hypothetical protein
1588	 52.69	0	1699833..1701857	-	674	59802061	-	NGO1740	-	NADH dehydrogenase subunit L
1589	 48.04	0	1701860..1702165	-	101	59802062	-	NGO1741	-	NADH dehydrogenase subunit K
1590	 54.02	0	1702162..1702833	-	223	59802063	-	NGO1742	-	hypothetical protein
1591	 53.33	0	1702845..1703324	-	159	59802064	-	NGO1743	-	NADH dehydrogenase subunit I
1592	 53.76	0	1703405..1704481	-	358	59802065	-	NGO1744	-	hypothetical protein
1593	 55.44	0	1704484..1706745	-	753	59802066	-	NGO1745	-	NADH dehydrogenase subunit G
1594	 54.30	0	1707458..1708759	-	433	59802067	-	NGO1746	-	hypothetical protein
1595	 54.85	0	1709149..1709622	-	157	59802068	-	NGO1747	-	NADH dehydrogenase subunit E
1596	 55.77	0	1709622..1710878	-	418	59802069	-	NGO1748	-	NADH dehydrogenase subunit D
1597	 51.01	0	1710868..1711461	-	197	59802070	-	NGO1749	-	NADH dehydrogenase subunit C
1598	 55.69	0	1711474..1711956	-	160	59802071	-	NGO1750	-	NADH dehydrogenase subunit B
1599	 50.42	0	1711947..1712303	-	118	59802072	-	NGO1751	-	hypothetical protein
1600	 48.59	0	1712796..1714283	-	495	59802073	-	NGO1752	-	hypothetical protein
1601	 47.50	0	1714270..1714890	-	206	59802074	-	NGO1753	-	hypothetical protein
1602	 40.80	-1	1715118..1715465	-	115	59802075	-	NGO1754	-	MafI protein
1603	 50.25	0	1715638..1715838	-	66	59802076	-	NGO1755	-	hypothetical protein
1604	 58.10	0	1716172..1716486	-	104	59802077	-	NGO1756	-	hypothetical protein
1605	 57.93	0	1716628..1718835	-	735	59802078	-	NGO1757	-	hypothetical protein
1606	 58.05	0	1719259..1721949	-	896	59802079	-	NGO1758	-	GlnE
1607	 43.15	-1	1722143..1722478	-	111	59802080	-	NGO1759	-	hypothetical protein
1608	 41.35	-1	1722492..1722965	-	157	59802081	-	NGO1760	-	hypothetical protein
1609	 55.36	0	1723162..1724169	-	335	59802082	-	NGO1761	-	dihydroorotate dehydrogenase 2
1610	 47.26	0	1724401..1724637	+	78	59802083	-	NGO1762	-	hypothetical protein
52.66	MEAN

6.57	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.