IslandPathversion 1.0

IslandPath Analysis: Neisseria gonorrhoeae FA 1090



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.66 STD DEV: 6.57
Neisseria gonorrhoeae FA 1090, complete genome - 1..2153922
2002 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1475	 57.74	0	1587922..1588425	-	167	59801948	-	NGO1620	-	putative phage associated protein
1476	 51.85	0	1588677..1588838	-	53	59801949	-	NGO1621	-	putative phage associated protein
1477	 57.97	0	1588835..1589110	-	91	59801950	-	NGO1622	-	putative phage associated protein
1478	 54.86	0	1589263..1589550	-	95	59801951	-	NGO1623	-	putative phage associated protein
1479	 44.78	-1	1589736..1589936	-	66	59801952	-	NGO1624	-	putative phage associated protein
1480	 48.20	0	1590177..1590593	-	138	59801953	-	NGO1625	-	putative phage associated protein
1481	 50.93	0	1590602..1591249	-	215	59801954	-	NGO1626	-	putative phage associated protein
1482	 50.25	0	1591369..1591770	-	133	59801955	-	NGO1627	-	putative phage associated protein
1483	 43.72	-1	1591873..1592055	-	60	59801956	-	NGO1628	-	putative phage associated protein
1484	 54.33	0	1592225..1593043	-	272	59801957	-	NGO1629	-	putative phage associated protein
1485	 45.77	-1	1593316..1594071	-	251	59801958	-	NGO1630	-	putative phage repressor protein, putative phage associated protein
1486	 49.36	0	1594482..1594637	+	51	59801959	-	NGO1631	-	putative phage associated protein
1487	 46.56	0	1594614..1594802	-	62	59801960	-	NGO1632	-	putative phage associated protein
1488	 50.88	0	1594975..1595202	+	75	59801961	-	NGO1633	-	putative phage associated protein
1489	 51.27	0	1595199..1595750	+	183	59801962	-	NGO1634	-	putative phage associated protein
1490	 64.81	+1	1596026..1596241	+	71	59801963	-	NGO1635	-	putative phage associated protein
1491	 65.53	+1	1596419..1597036	+	205	59801964	-	NGO1636	-	putative DNA replication protein, putative phage associated protein
1492	 65.38	+1	1597106..1597261	+	51	59801965	-	NGO1637	-	putative phage associated protein
1493	 59.39	+1	1597352..1597846	+	164	59801966	-	NGO1638	-	putative phage associated protein
1494	 58.93	0	1597884..1598387	-	167	59801967	-	NGO1639	-	putative phage associated protein
1495	 64.06	+1	1598474..1599049	+	191	59801968	-	NGO1640	-	putative phage associated protein
1496	 46.52	0	1599378..1600340	-	320	59801969	-	NGO1641	-	putative invertase related gene 6 (Irg6), putative phage associated protein
1497	 42.59	-1	1600891..1601214	-	107	59801970	-	NGO1642	-	putative phage associated protein
1498	 49.54	0	1601335..1602420	-	361	59801971	-	NGO1643	-	putative phage associated protein
1499	 46.39	0	1602430..1602720	-	96	59801972	-	NGO1645	-	putative phage associated protein
1500	 44.91	-1	1603894..1604178	+	94	59801973	-	NGO1646	-	putative phage associated protein
1501	 46.30	0	1604179..1605366	+	395	59801974	-	NGO1647	-	putative phage associated protein
1502	 39.39	-2	1605581..1606537	+	318	59801975	-	NGO1648	-	Irg7
1503	 60.00	+1	1606828..1607367	+	179	59801976	-	NGO1649	-	putative phage associated protein
1504	 57.68	0	1607368..1607712	+	114	59801977	-	NGO1650	-	putative phage associated protein
1505	 50.13	0	1608229..1608609	+	126	59801978	-	NGO1651	-	putative phage associated protein
1506	 53.25	0	1608810..1609808	-	332	59801979	-	NGO1652	-	putative phage associated protein
1507	 29.94	-2	1610151..1610327	-	58	59801980	-	NGO1653	-	hypothetical protein
1508	 56.71	0	1610655..1611146	-	163	59801981	-	NGO1654	-	D-tyrosyl-tRNA deacylase
1509	 53.89	0	1611220..1611978	-	252	59801982	-	NGO1655	-	hypothetical protein
1510	 51.79	0	1612048..1612914	-	288	59801983	-	NGO1656	-	hypothetical protein
1511	 55.91	0	1612963..1613241	-	92	59801984	-	NGO1657	-	hypothetical protein
1512	 54.64	0	1613241..1613531	-	96	59801985	-	NGO1658	-	YciI-like protein
1513	 46.89	0	1613534..1614064	-	176	59801986	-	NGO1659	-	hypothetical protein
1514	 53.50	0	1617306..1618475	-	389	59801987	-	NGO1662	-	hypothetical protein
1515	 51.75	0	1618486..1618800	-	104	59801988	-	NGO1663	-	hypothetical protein
1516	 45.76	-1	1618903..1619079	+	58	59801989	-	NGO1664	-	hypothetical protein
1517	 56.36	0	1619110..1620108	+	332	59801990	-	NGO1665	-	branched-chain amino acid aminotransferase
1518	 57.76	0	1620353..1621138	-	261	59801991	-	NGO1666	-	enoyl-(acyl carrier protein) reductase
1519	 57.66	0	1621293..1622114	-	273	59801992	dapD	NGO1667	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
1520	 59.31	+1	1622324..1623967	-	547	59801993	-	NGO1668	-	glucose-6-phosphate isomerase
1521	 52.64	0	1624476..1625708	+	410	59801994	-	NGO1669	-	PilG
1522	 53.77	0	1625782..1626642	+	286	59801995	-	NGO1670	-	PilD
1523	 55.95	0	1626600..1627271	+	223	59801996	-	NGO1671	-	hypothetical protein
1524	 50.94	0	1627156..1627473	+	105	59801997	-	NGO1672	-	hypothetical protein
1525	 52.53	0	1627559..1629235	-	558	59801998	-	NGO1673	-	PilF
1526	 50.78	0	1629573..1630019	-	148	59801999	-	NGO1674	-	hypothetical protein
1527	 51.38	0	1630023..1630997	-	324	59802000	-	NGO1675	-	IspB
1528	 48.22	0	1631221..1631529	+	102	59802001	rplU	NGO1676	-	50S ribosomal protein L21
1529	 51.65	0	1631554..1631826	+	90	59802002	rpmA	NGO1677	-	50S ribosomal protein L27
1530	 52.74	0	1632061..1633245	+	394	59802003	-	NGO1678	-	hypothetical protein
1531	 43.59	-1	1633434..1633589	-	51	59802004	rpmG	NGO1679	-	50S ribosomal protein L33
1532	 51.28	0	1633621..1633854	-	77	59802005	rpmB	NGO1680	-	50S ribosomal protein L28
1533	 48.15	0	1633926..1634114	-	62	59802006	-	NGO1681	-	hypothetical protein
1534	 55.31	0	1634104..1635627	-	507	59802007	-	NGO1682	-	efflux pump protein, fatty acid resistance
1535	 59.83	+1	1635651..1636835	-	394	59802008	-	NGO1683	-	efflux pump protein, fatty acid resistance
1536	 52.11	0	1637094..1637567	+	157	59802009	-	NGO1684	-	7-cyano-7-deazaguanine reductase
1537	 54.29	0	1637642..1638328	+	228	59802010	-	NGO1685	-	hypothetical protein
1538	 61.25	+1	1638678..1639970	-	430	59802011	-	NGO1686	-	hypothetical protein
1539	 57.67	0	1639882..1641015	+	377	59802012	-	NGO1687	-	hypothetical protein
1540	 55.31	0	1641216..1642685	-	489	59802013	-	NGO1688	-	putative outer membrane protein OmpU
1541	 49.59	0	1644374..1644619	-	81	59802014	-	NGO1690	-	hypothetical protein
1542	 44.22	-1	1644588..1644734	+	48	59802015	-	NGO1691	-	hypothetical protein
1543	 55.02	0	1644722..1645159	+	145	59802016	-	NGO1692	-	hypothetical protein
1544	 51.57	0	1645171..1645647	+	158	59802017	-	NGO1693	-	hypothetical protein
1545	 54.81	0	1645677..1646165	-	162	59802018	-	NGO1694	-	hypothetical protein
1546	 53.79	0	1646233..1647288	-	351	59802019	-	NGO1695	-	phospho-2-dehydro-3-deoxyheptonate aldolase
1547	 51.55	0	1655425..1656231	-	268	59802020	-	NGO1699	-	hypothetical protein
1548	 51.64	0	1656451..1657821	+	456	59802021	-	NGO1700	-	putative signal recognition particle protein
1549	 60.31	+1	1658077..1658532	+	151	59802022	-	NGO1701	-	hypothetical protein
1550	 51.81	0	1658587..1659111	-	174	59802023	-	NGO1702	-	hypothetical protein
1551	 46.63	0	1659056..1660018	+	320	59802024	-	NGO1703	-	Irg8
1552	 48.99	0	1660138..1660335	-	65	59802025	-	NGO1704	-	hypothetical protein
1553	 54.89	0	1660384..1660782	-	132	59802026	-	NGO1705	-	hypothetical protein
1554	 59.98	+1	1660890..1661801	+	303	59802027	-	NGO1706	-	LysR family transcriptional regulator
1555	 62.82	+1	1661791..1663089	+	432	59802028	-	NGO1707	-	putative deoxyribodopyrimidine photolyase
1556	 58.16	0	1663270..1665420	+	716	59802029	dinG	NGO1708	-	ATP-dependent DNA helicase DinG
1557	 57.24	0	1665456..1666070	+	204	59802030	-	NGO1709	-	hypothetical protein
1558	 49.17	0	1666206..1668074	-	622	59802031	-	NGO1710	-	putative trans-acylase protein
1559	 56.16	0	1668154..1669524	-	456	59802032	-	NGO1711	-	adenylosuccinate lyase
1560	 58.45	0	1669596..1670228	-	210	59802033	-	NGO1712	-	hypothetical protein
1561	 56.29	0	1670357..1672264	+	635	59802034	-	NGO1713	-	hypothetical protein
1562	 59.28	+1	1672744..1673745	-	333	59802035	-	NGO1714	-	putative cis-trans isomerase
1563	 59.23	0	1673847..1676252	-	801	59802036	-	NGO1715	-	OstA
1564	 56.22	0	1676322..1677326	+	334	59802037	-	NGO1716	-	hypothetical protein
1565	 57.16	0	1677383..1678087	-	234	59802038	-	NGO1717	-	putative thiol:disulphide interchange protein
1566	 55.36	0	1678525..1680063	+	512	59802039	-	NGO1718	-	hypothetical protein
1567	 61.77	+1	1680196..1681155	+	319	59802040	-	NGO1719	-	hypothetical protein
1568	 48.65	0	1681152..1681262	-	36	59802041	-	NGO1720	-	hypothetical protein
1569	 58.75	0	1681206..1681988	+	260	59802042	-	NGO1721	-	indole-3-glycerol-phosphate synthase
1570	 57.60	0	1682051..1684354	+	767	59802043	-	NGO1722	-	RecQ
1571	 51.61	0	1684391..1685692	-	433	59802044	-	NGO1723	-	hypothetical protein
1572	 59.44	+1	1686074..1686862	-	262	59802045	-	NGO1724	-	hypothetical protein
1573	 59.59	+1	1686859..1687635	-	258	59802046	-	NGO1725	-	putative bioH - biotin biosynthesis protein
1574	 57.30	0	1687607..1688332	+	241	59802047	-	NGO1726	-	hypothetical protein
52.66	MEAN

6.57	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.