IslandPath Analysis: Neisseria gonorrhoeae FA 1090



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.66   STD DEV: 6.57
Neisseria gonorrhoeae FA 1090, complete genome - 1..2153922
2002 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
103	 54.95	0	127825..128268	+	147	59800576	-	NGO0116	-	preprotein translocase subunit SecB
104	 58.69	0	128354..130396	+	680	59800577	-	NGO0117	-	hypothetical protein
105	 62.84	+1	130990..132033	-	347	59800578	argC	NGO0118	-	N-acetyl-gamma-glutamyl-phosphate reductase
106	 54.08	0	132030..132323	-	97	59800579	-	NGO0119	-	hypothetical protein
107	 31.01	-2	132347..132475	+	42	59800580	-	NGO0120	-	hypothetical protein
108	 44.24	-1	132575..133729	+	384	59800581	-	NGO0121	-	hypothetical protein
109	 42.16	-1	133904..134311	+	135	59800582	-	NGO0122	-	hypothetical protein
110	 48.78	0	134372..135646	+	424	59800583	-	NGO0123	-	putative secretion protein
111	 59.20	0	135831..136178	+	115	59800584	-	NGO0124	-	hypothetical protein
112	 45.37	-1	136192..136407	+	71	59800585	-	NGO0125	-	hypothetical protein
113	 56.15	0	137771..138997	-	408	59800586	rbn	NGO0127	-	fused ribonuclease BN/uncharacterized domain-containing protein
114	 56.69	0	139096..139476	+	126	59800587	-	NGO0128	-	hypothetical protein
115	 57.33	0	139485..140159	+	224	59800588	-	NGO0129	-	YbaX
116	 57.95	0	140187..140702	+	171	59800589	-	NGO0130	-	hypothetical protein
117	 53.66	0	140790..141212	+	140	59800590	-	NGO0131	-	putative 6-pyruvoyl-tetrahydropterin synthase
118	 55.85	0	141478..142485	+	335	59800591	-	NGO0132	-	hypothetical protein
119	 52.45	0	142700..142903	+	67	59800592	-	NGO0133	-	hypothetical protein
120	 58.29	0	142978..144063	-	361	59800593	-	NGO0135	-	beta-hexosaminidase
121	 56.41	0	144120..145640	-	506	59800594	-	NGO0136	-	hypothetical protein
122	 36.00	-2	145668..145817	+	49	59800595	-	NGO0137	-	hypothetical protein
123	 56.67	0	145843..147342	-	499	59800596	-	NGO0138	-	putative serine protease
124	 53.33	0	147480..148109	-	209	59800597	-	NGO0139	-	putative endonuclease III
125	 57.91	0	148156..148692	-	178	59800598	-	NGO0140	-	hypothetical protein
126	 39.46	-2	148719..148865	+	48	59800599	-	NGO0141	-	hypothetical protein
127	 52.69	0	148948..150228	+	426	59800600	-	NGO0142	-	putative sugar transporter
128	 54.78	0	150518..151897	+	459	59800601	-	NGO0143	-	hypothetical protein
129	 55.27	0	152040..152864	-	274	59800602	-	NGO0144	-	hypothetical protein
130	 51.26	0	152866..153501	-	211	59800603	-	NGO0145	-	hypothetical protein
131	 56.52	0	153500..154435	+	311	59800604	hemC	NGO0146	-	porphobilinogen deaminase
132	 56.08	0	156345..157430	-	361	59800605	-	NGO0147	-	hypothetical protein
133	 58.80	0	157367..157582	-	71	59800606	-	NGO0148	-	hypothetical protein
134	 58.30	0	157762..159135	-	457	59800607	-	NGO0149	-	putative ATP-dependent RNA helicase
135	 54.50	0	159159..159347	-	62	59800608	-	NGO0150	-	hypothetical protein
136	 60.90	+1	159349..160353	+	334	59800609	-	NGO0151	-	hypothetical protein
137	 50.61	0	160452..160781	+	109	59800610	-	NGO0152	-	hypothetical protein
138	 60.89	+1	160784..161320	+	178	161572978	ruvC	NGO0153	-	Holliday junction resolvase
139	 50.80	0	161371..162240	+	289	59800612	-	NGO0154	-	lipid A biosynthesis lauroyl acyltransferase
140	 54.07	0	162894..163028	+	44	59800613	-	NGO0155	-	hypothetical protein
141	 54.59	0	163144..163938	+	264	59800614	-	NGO0156	-	hypothetical protein
142	 57.45	0	164163..166766	+	867	59800615	-	NGO0158	-	putative aminopeptidase N
143	 41.67	-1	167614..167805	-	63	59800616	-	NGO0160	-	hypothetical protein
144	 25.21	-2	167838..168305	-	155	59800617	-	NGO0161	-	hypothetical protein
145	 40.42	-1	168362..168742	-	126	59800618	-	NGO0162	-	hypothetical protein
146	 30.42	-2	168745..169122	-	125	59800619	-	NGO0163	-	hypothetical protein
147	 36.07	-2	169180..169545	-	121	59800620	-	NGO0164	-	hypothetical protein
148	 47.59	0	169527..170066	-	179	59800621	-	NGO0165	-	hypothetical protein
149	 51.79	0	170109..170975	-	288	59800622	-	NGO0166	-	hypothetical protein
150	 31.48	-2	171011..171226	+	71	59800623	-	NGO0167	-	hypothetical protein
151	 54.48	0	171195..172121	-	308	59800624	-	NGO0168	-	MntC
152	 58.09	0	172198..173025	-	275	59800625	-	NGO0169	-	putative ABC transporter, membrane protein
153	 52.91	0	173108..173863	-	251	59800626	-	NGO0170	-	putative ABC transporter, ATP-binding protein
154	 54.10	0	174154..174519	-	121	59800627	rplS	NGO0171	-	50S ribosomal protein L19
155	 52.53	0	174534..175283	-	249	59800628	-	NGO0172	-	putative tRNA (guanine-N1)-methyltransferase
156	 51.18	0	175283..175792	-	169	59800629	rimM	NGO0173	-	16S rRNA-processing protein
157	 55.69	0	175808..176053	-	81	59800630	rpsP	NGO0174	-	30S ribosomal protein S16
158	 52.67	0	178639..180045	-	468	59800631	-	NGO0176	-	putative two-component system sensor kinase
159	 56.49	0	180058..180735	-	225	59800632	-	NGO0177	-	putative two-component system transcriptional response regulator
160	 56.09	0	180925..182739	-	604	59800633	-	NGO0178	-	hypothetical protein
161	 49.72	0	182729..183082	-	117	59800634	-	NGO0179	-	hypothetical protein
162	 54.94	0	183091..183738	-	215	59800635	-	NGO0180	-	hypothetical protein
163	 53.57	0	183743..184513	-	256	59800636	-	NGO0181	-	putative sec-independent protein translocase component
164	 55.02	0	184526..185212	-	228	59800637	-	NGO0182	-	putative sec-independent protein translocase component
165	 46.08	-1	185216..185419	-	67	59800638	-	NGO0183	-	hypothetical protein
166	 50.62	0	185466..185789	-	107	59800639	-	NGO0184	-	HitA
167	 52.78	0	185863..186186	-	107	59800640	-	NGO0185	-	putative phosphoribosyl-ATP cyclohydrolase
168	 56.06	0	186327..187391	-	354	59800641	-	NGO0186	-	putative zinc-binding alcohol dehydrogenas
169	 58.36	0	188256..189374	-	372	59800642	-	NGO0187	-	hypothetical protein
170	 48.31	0	189505..189771	+	88	59800643	-	NGO0188	-	hypothetical protein
171	 52.93	0	189979..191835	+	618	59800644	secD	NGO0189	-	preprotein translocase subunit SecD
172	 48.93	0	191839..192774	+	311	59800645	secF	NGO0190	-	preprotein translocase subunit SecF
173	 52.96	0	192979..193248	+	89	59800646	rpsO	NGO0191	-	30S ribosomal protein S15
174	 49.57	0	193358..194650	+	430	59800647	-	NGO0192	-	putative ABC transporter, ATP-binding protein, polyamine
175	 48.34	0	194984..195949	+	321	59800648	-	NGO0195	-	putative ABC transporter, permease protein, polyamine
176	 51.13	0	195949..196836	+	295	59800649	-	NGO0196	-	putative ABC transporter, permease protein, polyamine
177	 52.11	0	196858..198258	+	466	59800650	-	NGO0197	-	putative oxidoreductase
178	 56.85	0	198352..199818	-	488	59800651	-	NGO0198	-	putative transporter, ammonium
179	 54.21	0	200272..201531	-	419	59800652	rho	NGO0199	-	transcription termination factor Rho
180	 55.14	0	201752..204136	-	794	59800653	-	NGO0200	-	phosphoenolpyruvate synthase
181	 55.20	0	204491..205144	+	217	59800654	-	NGO0201	-	IS1016 transposase
182	 54.26	0	205270..206091	+	273	59800655	-	NGO0202	-	hypothetical protein
183	 59.07	0	206177..206887	-	236	59800656	-	NGO0203	-	putative phosphatase
184	 59.30	+1	206877..207704	-	275	59800657	-	NGO0204	-	hypothetical protein
185	 57.05	0	208087..208710	+	207	59800658	-	NGO0205	-	LolA
186	 55.15	0	208983..210119	+	378	59800659	-	NGO0206	-	putative ABC transporter, periplasmic binding protein, polyamine
187	 30.69	-2	210214..211197	+	327	59800660	-	NGO0207	-	putative sugar transferase
188	 57.06	0	211238..211768	+	176	59800661	-	NGO0208	-	hypothetical protein
189	 55.33	0	211936..213531	-	531	59800662	prfC	NGO0209	-	peptide chain release factor 3
190	 53.54	0	213638..214033	-	131	59800663	-	NGO0210	-	phosphoribosyl-AMP cyclohydrolase
191	 61.46	+1	214064..214831	-	255	59800664	-	NGO0211	-	imidazole glycerol phosphate synthase subunit HisF
192	 59.08	0	214844..215581	-	245	59800665	-	NGO0212	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
193	 54.93	0	215614..216252	-	212	59800666	hisH	NGO0213	-	imidazole glycerol phosphate synthase subunit HisH
194	 59.95	+1	216382..217884	-	500	59800667	-	NGO0214	-	putative phosphotransacetylase
195	 60.81	+1	218069..219127	-	352	59800668	-	NGO0215	-	ABC transporter, ATP-binding protein, iron related
196	 52.03	0	219148..220677	-	509	59800669	-	NGO0216	-	ABC transporter, permease protein, iron related
197	 55.82	0	220733..221728	-	331	59800670	-	NGO0217	-	ABC transporter, periplasmic binding protein, iron related
198	 52.92	0	222119..222460	-	113	59800671	-	NGO0218	-	hypothetical protein
199	 57.44	0	222518..223894	-	458	59800672	-	NGO0219	-	argininosuccinate lyase
200	 57.01	0	223913..224782	-	289	59800673	-	NGO0220	-	putative UTP--glucose-1-phosphate uridylyltransferase
201	 57.17	0	224810..225409	-	199	59800674	-	NGO0221	-	putative deoxyribonucleotide triphosphate pyrophosphatase
202	 56.84	0	225402..225635	-	77	59800675	-	NGO0222	-	hypothetical protein
52.66	MEAN

6.57	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.