IslandPathversion 1.0

IslandPath Analysis: Neisseria gonorrhoeae FA 1090



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.66 STD DEV: 6.57
Neisseria gonorrhoeae FA 1090, complete genome - 1..2153922
2002 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1428	 61.90	+1	1539526..1541034	+	502	59801901	-	NGO1568	-	hypothetical protein
1429	 54.50	0	1547577..1549253	+	558	59801902	-	NGO1573	-	putative ABC transporter ATP-binding protein
1430	 54.32	0	1549313..1549798	-	161	59801903	-	NGO1574	-	hypothetical protein
1431	 54.96	0	1549791..1550747	-	318	59801904	-	NGO1575	-	thiamine monophosphate kinase
1432	 47.27	0	1551327..1551491	+	54	59801905	-	NGO1576	-	hypothetical protein
1433	 52.32	0	1551522..1552232	-	236	59801906	-	NGO1577	-	Omp3
1434	 52.58	0	1552596..1553546	+	316	59801907	-	NGO1578	-	transcriptional regulator CysB-like protein
1435	 52.52	0	1553659..1554393	-	244	59801908	-	NGO1579	-	putative anaerobic transcriptional regulator
1436	 54.29	0	1554528..1555949	+	473	59801909	-	NGO1580	-	coproporphyrinogen III oxidase
1437	 53.59	0	1556189..1557763	-	524	59801910	-	NGO1581	-	putative transport protein
1438	 50.00	0	1557793..1557990	+	65	59801911	-	NGO1582	-	hypothetical protein
1439	 60.04	+1	1558058..1559188	+	376	59801912	anmK	NGO1583	-	anhydro-N-acetylmuramic acid kinase
1440	 59.98	+1	1559307..1560248	+	313	59801913	-	NGO1584	-	MafA3
1441	 54.25	0	1560252..1561982	+	576	59801914	-	NGO1585	-	MafB4
1442	 34.40	-2	1561960..1562241	+	93	59801915	-	NGO1586	-	hypothetical protein
1443	 25.18	-2	1562941..1563357	+	138	59801916	-	NGO1588	-	hypothetical protein
1444	 45.72	-1	1563493..1564170	+	225	59801917	-	NGO1589	-	hypothetical protein
1445	 33.83	-2	1564176..1564574	+	132	59801918	-	NGO1590	-	hypothetical protein
1446	 35.19	-2	1564605..1564982	+	125	59801919	-	NGO1591	-	hypothetical protein
1447	 44.85	-1	1565113..1565850	+	245	59801920	-	NGO1592	-	hypothetical protein
1448	 35.36	-2	1565922..1566266	+	114	59801921	-	NGO1593	-	hypothetical protein
1449	 35.90	-2	1566514..1566786	+	90	59801922	-	NGO1594	-	hypothetical protein
1450	 36.45	-2	1566907..1567452	+	181	59801923	-	NGO1595	-	hypothetical protein
1451	 26.12	-2	1567856..1568257	+	133	59801924	-	NGO1596	-	hypothetical protein
1452	 47.57	0	1568599..1570263	-	554	59801925	-	NGO1597	-	hypothetical protein
1453	 51.81	0	1570369..1570644	-	91	59801926	-	NGO1598	-	hypothetical protein
1454	 54.91	0	1570641..1571924	-	427	59801927	-	NGO1599	-	AmpG
1455	 56.59	0	1572073..1573491	-	472	59801928	-	NGO1600	-	hypothetical protein
1456	 56.80	0	1572106..1573584	+	492	59801929	-	NGO1601	-	hypothetical protein
1457	 58.02	0	1573802..1574611	+	269	59801930	-	NGO1602	-	putative shikimate dehydrogenase
1458	 54.13	0	1574614..1575315	+	233	59801931	-	NGO1603	-	monofunctional peptidoglycan transglycosylase
1459	 49.79	0	1575327..1575569	+	80	59801932	-	NGO1604	-	hypothetical protein
1460	 56.60	0	1575855..1576589	-	244	59801933	-	NGO1605	-	putative ABC transporter, ATP-binding protein
1461	 53.86	0	1576660..1577190	-	176	59801934	-	NGO1606	-	hypothetical protein
1462	 49.66	0	1577171..1577752	-	193	59801935	-	NGO1607	-	hypothetical protein
1463	 57.62	0	1577749..1578312	-	187	59801936	-	NGO1608	-	hypothetical protein
1464	 58.90	0	1578351..1579406	-	351	59801937	-	NGO1609	-	KpsF
1465	 58.24	0	1579422..1580477	+	351	59801938	-	NGO1610	-	transaldolase
1466	 61.71	+1	1580935..1581822	+	295	59801939	-	NGO1611	-	glutamyl-Q tRNA(Asp) synthetase
1467	 56.83	0	1581892..1582938	-	348	59801940	-	NGO1612	-	tRNA-dihydrouridine synthase A
1468	 52.38	0	1583028..1584182	+	384	59801941	-	NGO1613	-	putative integrase/recombinase, putative phage associated protein
1469	 49.44	0	1584232..1584498	-	88	59801942	-	NGO1614	-	putative phage associated protein
1470	 56.22	0	1584606..1585754	-	382	59801943	-	NGO1615	-	putative phage associated protein
1471	 57.62	0	1585751..1586734	-	327	59801944	-	NGO1616	-	putative phage associated protein
1472	 32.87	-2	1586845..1587060	-	71	59801945	-	NGO1617	-	putative phage associated protein
1473	 52.44	0	1587112..1587603	-	163	59801946	-	NGO1618	-	putative phage associated protein
1474	 56.28	0	1587600..1587782	-	60	59801947	-	NGO1619	-	putative phage associated protein
1475	 57.74	0	1587922..1588425	-	167	59801948	-	NGO1620	-	putative phage associated protein
1476	 51.85	0	1588677..1588838	-	53	59801949	-	NGO1621	-	putative phage associated protein
1477	 57.97	0	1588835..1589110	-	91	59801950	-	NGO1622	-	putative phage associated protein
1478	 54.86	0	1589263..1589550	-	95	59801951	-	NGO1623	-	putative phage associated protein
1479	 44.78	-1	1589736..1589936	-	66	59801952	-	NGO1624	-	putative phage associated protein
1480	 48.20	0	1590177..1590593	-	138	59801953	-	NGO1625	-	putative phage associated protein
1481	 50.93	0	1590602..1591249	-	215	59801954	-	NGO1626	-	putative phage associated protein
1482	 50.25	0	1591369..1591770	-	133	59801955	-	NGO1627	-	putative phage associated protein
1483	 43.72	-1	1591873..1592055	-	60	59801956	-	NGO1628	-	putative phage associated protein
1484	 54.33	0	1592225..1593043	-	272	59801957	-	NGO1629	-	putative phage associated protein
1485	 45.77	-1	1593316..1594071	-	251	59801958	-	NGO1630	-	putative phage repressor protein, putative phage associated protein
1486	 49.36	0	1594482..1594637	+	51	59801959	-	NGO1631	-	putative phage associated protein
1487	 46.56	0	1594614..1594802	-	62	59801960	-	NGO1632	-	putative phage associated protein
1488	 50.88	0	1594975..1595202	+	75	59801961	-	NGO1633	-	putative phage associated protein
1489	 51.27	0	1595199..1595750	+	183	59801962	-	NGO1634	-	putative phage associated protein
1490	 64.81	+1	1596026..1596241	+	71	59801963	-	NGO1635	-	putative phage associated protein
1491	 65.53	+1	1596419..1597036	+	205	59801964	-	NGO1636	-	putative DNA replication protein, putative phage associated protein
1492	 65.38	+1	1597106..1597261	+	51	59801965	-	NGO1637	-	putative phage associated protein
1493	 59.39	+1	1597352..1597846	+	164	59801966	-	NGO1638	-	putative phage associated protein
1494	 58.93	0	1597884..1598387	-	167	59801967	-	NGO1639	-	putative phage associated protein
1495	 64.06	+1	1598474..1599049	+	191	59801968	-	NGO1640	-	putative phage associated protein
1496	 46.52	0	1599378..1600340	-	320	59801969	-	NGO1641	-	putative invertase related gene 6 (Irg6), putative phage associated protein
1497	 42.59	-1	1600891..1601214	-	107	59801970	-	NGO1642	-	putative phage associated protein
1498	 49.54	0	1601335..1602420	-	361	59801971	-	NGO1643	-	putative phage associated protein
1499	 46.39	0	1602430..1602720	-	96	59801972	-	NGO1645	-	putative phage associated protein
1500	 44.91	-1	1603894..1604178	+	94	59801973	-	NGO1646	-	putative phage associated protein
1501	 46.30	0	1604179..1605366	+	395	59801974	-	NGO1647	-	putative phage associated protein
1502	 39.39	-2	1605581..1606537	+	318	59801975	-	NGO1648	-	Irg7
1503	 60.00	+1	1606828..1607367	+	179	59801976	-	NGO1649	-	putative phage associated protein
1504	 57.68	0	1607368..1607712	+	114	59801977	-	NGO1650	-	putative phage associated protein
1505	 50.13	0	1608229..1608609	+	126	59801978	-	NGO1651	-	putative phage associated protein
1506	 53.25	0	1608810..1609808	-	332	59801979	-	NGO1652	-	putative phage associated protein
1507	 29.94	-2	1610151..1610327	-	58	59801980	-	NGO1653	-	hypothetical protein
1508	 56.71	0	1610655..1611146	-	163	59801981	-	NGO1654	-	D-tyrosyl-tRNA deacylase
1509	 53.89	0	1611220..1611978	-	252	59801982	-	NGO1655	-	hypothetical protein
1510	 51.79	0	1612048..1612914	-	288	59801983	-	NGO1656	-	hypothetical protein
1511	 55.91	0	1612963..1613241	-	92	59801984	-	NGO1657	-	hypothetical protein
1512	 54.64	0	1613241..1613531	-	96	59801985	-	NGO1658	-	YciI-like protein
1513	 46.89	0	1613534..1614064	-	176	59801986	-	NGO1659	-	hypothetical protein
1514	 53.50	0	1617306..1618475	-	389	59801987	-	NGO1662	-	hypothetical protein
1515	 51.75	0	1618486..1618800	-	104	59801988	-	NGO1663	-	hypothetical protein
1516	 45.76	-1	1618903..1619079	+	58	59801989	-	NGO1664	-	hypothetical protein
1517	 56.36	0	1619110..1620108	+	332	59801990	-	NGO1665	-	branched-chain amino acid aminotransferase
1518	 57.76	0	1620353..1621138	-	261	59801991	-	NGO1666	-	enoyl-(acyl carrier protein) reductase
1519	 57.66	0	1621293..1622114	-	273	59801992	dapD	NGO1667	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
1520	 59.31	+1	1622324..1623967	-	547	59801993	-	NGO1668	-	glucose-6-phosphate isomerase
1521	 52.64	0	1624476..1625708	+	410	59801994	-	NGO1669	-	PilG
1522	 53.77	0	1625782..1626642	+	286	59801995	-	NGO1670	-	PilD
1523	 55.95	0	1626600..1627271	+	223	59801996	-	NGO1671	-	hypothetical protein
1524	 50.94	0	1627156..1627473	+	105	59801997	-	NGO1672	-	hypothetical protein
1525	 52.53	0	1627559..1629235	-	558	59801998	-	NGO1673	-	PilF
1526	 50.78	0	1629573..1630019	-	148	59801999	-	NGO1674	-	hypothetical protein
1527	 51.38	0	1630023..1630997	-	324	59802000	-	NGO1675	-	IspB
52.66	MEAN

6.57	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.