IslandPath Analysis: Neisseria gonorrhoeae FA 1090



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.66   STD DEV: 6.57
Neisseria gonorrhoeae FA 1090, complete genome - 1..2153922
2002 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1388	 54.40	0	1494697..1495845	-	382	59801861	-	NGO1525	-	methylcitrate synthase
1389	 52.45	0	1495930..1496808	-	292	59801862	prpB	NGO1526	-	2-methylisocitrate lyase
1390	 53.85	0	1497426..1498736	-	436	59801863	-	NGO1527	-	hypothetical protein
1391	 52.67	0	1498872..1500050	-	392	59801864	-	NGO1528	-	cell division protein FtsZ
1392	 52.45	0	1500169..1501413	-	414	59801865	-	NGO1529	-	hypothetical protein
1393	 53.50	0	1501499..1502227	-	242	59801866	-	NGO1530	-	hypothetical protein
1394	 53.11	0	1502217..1503131	-	304	59801867	ddl	NGO1531	-	D-alanine--D-alanine ligase
1395	 55.67	0	1503243..1504652	-	469	161572972	murC	NGO1532	-	UDP-N-acetylmuramate--L-alanine ligase
1396	 59.08	0	1504807..1505874	-	355	59801869	-	NGO1533	-	hypothetical protein
1397	 53.58	0	1505878..1507176	-	432	59801870	-	NGO1534	-	hypothetical protein
1398	 56.58	0	1507328..1508665	-	445	59801871	murD	NGO1535	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
1399	 51.97	0	1508750..1509130	-	126	59801872	-	NGO1536	-	hypothetical protein
1400	 55.22	0	1509255..1510337	-	360	59801873	mraY	NGO1537	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
1401	 49.18	0	1510582..1510764	-	60	59801874	-	NGO1538	-	hypothetical protein
1402	 56.29	0	1510761..1512119	-	452	59801875	-	NGO1539	-	putative UDP-MurNAc-pentapeptide synthetase
1403	 48.45	0	1512244..1513890	-	548	59801876	-	NGO1540	-	Dca
1404	 57.27	0	1513913..1515391	-	492	59801877	murE	NGO1541	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
1405	 55.00	0	1515416..1517164	-	582	59801878	-	NGO1542	-	Pbp2
1406	 49.24	0	1517225..1517488	-	87	59801879	-	NGO1543	-	hypothetical protein
1407	 57.89	0	1517515..1518471	-	318	59801880	mraW	NGO1544	-	S-adenosyl-methyltransferase MraW
1408	 53.29	0	1518468..1518923	-	151	59801881	-	NGO1545	-	cell division protein MraZ
1409	 50.96	0	1519202..1520449	+	415	59801882	-	NGO1546	-	hypothetical protein
1410	 46.47	0	1520890..1521711	-	273	59801883	-	NGO1547	-	hypothetical protein
1411	 47.91	0	1521744..1522388	-	214	59801884	-	NGO1548	-	DsbA
1412	 51.49	0	1522391..1523260	-	289	59801885	-	NGO1549	-	hypothetical protein
1413	 59.19	0	1523360..1524856	-	498	59801886	-	NGO1550	-	hypothetical protein
1414	 46.73	0	1524870..1525526	-	218	59801887	-	NGO1551	-	hypothetical protein
1415	 55.53	0	1525688..1527205	+	505	59801888	-	NGO1552	-	putative sodium/proline symporter, proline permease
1416	 58.40	0	1532253..1532615	-	120	59801889	-	NGO1556	-	hypothetical protein
1417	 59.29	+1	1532654..1532992	+	112	59801890	-	NGO1557	-	hypothetical protein
1418	 57.99	0	1533130..1533348	-	72	59801891	-	NGO1558	-	hypothetical protein
1419	 62.54	+1	1533468..1534145	+	225	59801892	-	NGO1559	-	hypothetical protein
1420	 53.06	0	1534233..1534379	+	48	59801893	-	NGO1560	-	hypothetical protein
1421	 55.90	0	1534419..1535189	-	256	59801894	-	NGO1561	-	putative exodeoxyribonuclease III
1422	 53.55	0	1535249..1535530	-	93	59801895	-	NGO1562	-	ArsR family transcriptional regulator
1423	 36.02	-2	1535587..1535772	+	61	59801896	-	NGO1563	-	hypothetical protein
1424	 53.97	0	1535783..1536034	+	83	59801897	-	NGO1564	-	hypothetical protein
1425	 63.04	+1	1536265..1537146	-	293	59801898	-	NGO1565	-	putative nicotinate-nucleotide pyrophosphorylase
1426	 60.92	+1	1537222..1538160	-	312	59801899	-	NGO1566	-	hypothetical protein
1427	 59.12	0	1538362..1539474	+	370	59801900	-	NGO1567	-	quinolinate synthetase
1428	 61.90	+1	1539526..1541034	+	502	59801901	-	NGO1568	-	hypothetical protein
1429	 54.50	0	1547577..1549253	+	558	59801902	-	NGO1573	-	putative ABC transporter ATP-binding protein
1430	 54.32	0	1549313..1549798	-	161	59801903	-	NGO1574	-	hypothetical protein
1431	 54.96	0	1549791..1550747	-	318	59801904	-	NGO1575	-	thiamine monophosphate kinase
1432	 47.27	0	1551327..1551491	+	54	59801905	-	NGO1576	-	hypothetical protein
1433	 52.32	0	1551522..1552232	-	236	59801906	-	NGO1577	-	Omp3
1434	 52.58	0	1552596..1553546	+	316	59801907	-	NGO1578	-	transcriptional regulator CysB-like protein
1435	 52.52	0	1553659..1554393	-	244	59801908	-	NGO1579	-	putative anaerobic transcriptional regulator
1436	 54.29	0	1554528..1555949	+	473	59801909	-	NGO1580	-	coproporphyrinogen III oxidase
1437	 53.59	0	1556189..1557763	-	524	59801910	-	NGO1581	-	putative transport protein
1438	 50.00	0	1557793..1557990	+	65	59801911	-	NGO1582	-	hypothetical protein
1439	 60.04	+1	1558058..1559188	+	376	59801912	anmK	NGO1583	-	anhydro-N-acetylmuramic acid kinase
1440	 59.98	+1	1559307..1560248	+	313	59801913	-	NGO1584	-	MafA3
1441	 54.25	0	1560252..1561982	+	576	59801914	-	NGO1585	-	MafB4
1442	 34.40	-2	1561960..1562241	+	93	59801915	-	NGO1586	-	hypothetical protein
1443	 25.18	-2	1562941..1563357	+	138	59801916	-	NGO1588	-	hypothetical protein
1444	 45.72	-1	1563493..1564170	+	225	59801917	-	NGO1589	-	hypothetical protein
1445	 33.83	-2	1564176..1564574	+	132	59801918	-	NGO1590	-	hypothetical protein
1446	 35.19	-2	1564605..1564982	+	125	59801919	-	NGO1591	-	hypothetical protein
1447	 44.85	-1	1565113..1565850	+	245	59801920	-	NGO1592	-	hypothetical protein
1448	 35.36	-2	1565922..1566266	+	114	59801921	-	NGO1593	-	hypothetical protein
1449	 35.90	-2	1566514..1566786	+	90	59801922	-	NGO1594	-	hypothetical protein
1450	 36.45	-2	1566907..1567452	+	181	59801923	-	NGO1595	-	hypothetical protein
1451	 26.12	-2	1567856..1568257	+	133	59801924	-	NGO1596	-	hypothetical protein
1452	 47.57	0	1568599..1570263	-	554	59801925	-	NGO1597	-	hypothetical protein
1453	 51.81	0	1570369..1570644	-	91	59801926	-	NGO1598	-	hypothetical protein
1454	 54.91	0	1570641..1571924	-	427	59801927	-	NGO1599	-	AmpG
1455	 56.59	0	1572073..1573491	-	472	59801928	-	NGO1600	-	hypothetical protein
1456	 56.80	0	1572106..1573584	+	492	59801929	-	NGO1601	-	hypothetical protein
1457	 58.02	0	1573802..1574611	+	269	59801930	-	NGO1602	-	putative shikimate dehydrogenase
1458	 54.13	0	1574614..1575315	+	233	59801931	-	NGO1603	-	monofunctional peptidoglycan transglycosylase
1459	 49.79	0	1575327..1575569	+	80	59801932	-	NGO1604	-	hypothetical protein
1460	 56.60	0	1575855..1576589	-	244	59801933	-	NGO1605	-	putative ABC transporter, ATP-binding protein
1461	 53.86	0	1576660..1577190	-	176	59801934	-	NGO1606	-	hypothetical protein
1462	 49.66	0	1577171..1577752	-	193	59801935	-	NGO1607	-	hypothetical protein
1463	 57.62	0	1577749..1578312	-	187	59801936	-	NGO1608	-	hypothetical protein
1464	 58.90	0	1578351..1579406	-	351	59801937	-	NGO1609	-	KpsF
1465	 58.24	0	1579422..1580477	+	351	59801938	-	NGO1610	-	transaldolase
1466	 61.71	+1	1580935..1581822	+	295	59801939	-	NGO1611	-	glutamyl-Q tRNA(Asp) synthetase
1467	 56.83	0	1581892..1582938	-	348	59801940	-	NGO1612	-	tRNA-dihydrouridine synthase A
1468	 52.38	0	1583028..1584182	+	384	59801941	-	NGO1613	-	putative integrase/recombinase, putative phage associated protein
1469	 49.44	0	1584232..1584498	-	88	59801942	-	NGO1614	-	putative phage associated protein
1470	 56.22	0	1584606..1585754	-	382	59801943	-	NGO1615	-	putative phage associated protein
1471	 57.62	0	1585751..1586734	-	327	59801944	-	NGO1616	-	putative phage associated protein
1472	 32.87	-2	1586845..1587060	-	71	59801945	-	NGO1617	-	putative phage associated protein
1473	 52.44	0	1587112..1587603	-	163	59801946	-	NGO1618	-	putative phage associated protein
1474	 56.28	0	1587600..1587782	-	60	59801947	-	NGO1619	-	putative phage associated protein
1475	 57.74	0	1587922..1588425	-	167	59801948	-	NGO1620	-	putative phage associated protein
1476	 51.85	0	1588677..1588838	-	53	59801949	-	NGO1621	-	putative phage associated protein
1477	 57.97	0	1588835..1589110	-	91	59801950	-	NGO1622	-	putative phage associated protein
1478	 54.86	0	1589263..1589550	-	95	59801951	-	NGO1623	-	putative phage associated protein
1479	 44.78	-1	1589736..1589936	-	66	59801952	-	NGO1624	-	putative phage associated protein
1480	 48.20	0	1590177..1590593	-	138	59801953	-	NGO1625	-	putative phage associated protein
1481	 50.93	0	1590602..1591249	-	215	59801954	-	NGO1626	-	putative phage associated protein
1482	 50.25	0	1591369..1591770	-	133	59801955	-	NGO1627	-	putative phage associated protein
1483	 43.72	-1	1591873..1592055	-	60	59801956	-	NGO1628	-	putative phage associated protein
1484	 54.33	0	1592225..1593043	-	272	59801957	-	NGO1629	-	putative phage associated protein
1485	 45.77	-1	1593316..1594071	-	251	59801958	-	NGO1630	-	putative phage repressor protein, putative phage associated protein
1486	 49.36	0	1594482..1594637	+	51	59801959	-	NGO1631	-	putative phage associated protein
1487	 46.56	0	1594614..1594802	-	62	59801960	-	NGO1632	-	putative phage associated protein
52.66	MEAN

6.57	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.