IslandPathversion 1.0

IslandPath Analysis: Neisseria gonorrhoeae FA 1090



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.66 STD DEV: 6.57
Neisseria gonorrhoeae FA 1090, complete genome - 1..2153922
2002 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1344	 42.68	-1	1440881..1441126	-	81	59801817	-	NGO1478	-	hypothetical protein
1345	 48.10	0	1441350..1441979	-	209	59801818	-	NGO1479	-	hypothetical protein
1346	 42.91	-1	1443640..1444422	-	260	59801819	-	NGO1481	-	hypothetical protein
1347	 43.52	-1	1444410..1445057	-	215	59801820	-	NGO1482	-	hypothetical protein
1348	 44.18	-1	1445067..1446209	-	380	59801821	-	NGO1483	-	8-amino-7-oxononanoate synthase
1349	 53.67	0	1446432..1447508	+	358	59801822	-	NGO1484	-	hypothetical protein
1350	 50.44	0	1447712..1449178	-	488	59801823	-	NGO1485	-	hypothetical protein
1351	 53.25	0	1449376..1450299	-	307	59801824	-	NGO1486	-	agmatinase
1352	 49.45	0	1450398..1452290	-	630	59801825	-	NGO1487	-	arginine decarboxylase
1353	 50.18	0	1452457..1452741	-	94	59801826	-	NGO1488	-	hypothetical protein
1354	 53.77	0	1452891..1454441	-	516	59801827	-	NGO1489	-	aspartyl-tRNA synthetase
1355	 58.82	0	1454443..1454697	-	84	59801828	-	NGO1490	-	putative aspartyl-tRNA synthetase
1356	 52.57	0	1454755..1455492	-	245	59801829	-	NGO1491	-	hypothetical protein
1357	 53.96	0	1455598..1456746	-	382	59801830	-	NGO1492	-	putative phospholipase
1358	 53.79	0	1456906..1457169	-	87	59801831	rpsT	NGO1493	-	30S ribosomal protein S20
1359	 54.68	0	1457473..1458615	+	380	59801832	-	NGO1494	-	putative ABC transporter, periplasmic binding protein, polyamine
1360	 54.55	0	1460228..1462966	-	912	59801833	-	NGO1495	-	TbpA
1361	 47.59	0	1463053..1465164	-	703	59801834	-	NGO1496	-	TbpB
1362	 55.56	0	1465247..1465390	-	47	59801835	-	NGO1497	-	hypothetical protein
1363	 53.09	0	1465500..1465661	-	53	59801836	-	NGO1498	-	hypothetical protein
1364	 50.99	0	1467069..1468178	+	369	59801837	-	NGO1499	-	hypothetical protein
1365	 55.47	0	1468907..1469719	-	270	59801838	-	NGO1500	-	glutamate racemase
1366	 60.17	+1	1469908..1470369	+	153	59801839	-	NGO1501	-	hypothetical protein
1367	 60.97	+1	1470318..1471616	+	432	59801840	-	NGO1502	-	putative amidase
1368	 45.36	-1	1471644..1472516	+	290	59801841	-	NGO1503	-	hypothetical protein
1369	 59.32	+1	1472562..1473704	-	380	59801842	-	NGO1504	-	hypothetical protein
1370	 56.26	0	1473753..1474175	-	140	59801843	-	NGO1505	-	hypothetical protein
1371	 60.00	+1	1474168..1474977	-	269	59801844	-	NGO1506	-	putative NTP pyrophosphohydrolase
1372	 56.08	0	1475059..1475436	-	125	59801845	-	NGO1507	-	putative acyl-carrier protein synthase
1373	 58.98	0	1475486..1476214	-	242	59801846	-	NGO1508	-	pyridoxal phosphate biosynthetic protein PdxJ
1374	 60.48	+1	1476267..1477010	-	247	59801847	-	NGO1509	-	hypothetical protein
1375	 59.40	+1	1477047..1478174	-	375	59801848	-	NGO1510	-	putative chorismate mutase
1376	 58.95	0	1477747..1479249	-	500	59801849	-	NGO1511	-	putative drug resistance protein
1377	 59.59	+1	1479533..1480408	-	291	59801850	-	NGO1512	-	hypothetical protein
1378	 51.97	0	1481445..1482281	+	278	59801851	-	NGO1513	-	OpaD
1379	 59.67	+1	1482948..1483862	-	304	59801852	-	NGO1514	-	hypothetical protein
1380	 61.51	+1	1483845..1484717	+	290	59801853	-	NGO1515	-	putative oxidoreductase
1381	 57.44	0	1484775..1485977	-	400	59801854	-	NGO1516	-	hypothetical protein
1382	 57.45	0	1485974..1486342	-	122	59801855	-	NGO1517	-	hypothetical protein
1383	 55.68	0	1486339..1487112	-	257	59801856	-	NGO1518	-	hypothetical protein
1384	 58.33	0	1486516..1486959	+	147	59801857	-	NGO1519	-	hypothetical protein
1385	 55.32	0	1487121..1487825	-	234	59801858	-	NGO1520	-	hypothetical protein
1386	 57.50	0	1487852..1489051	-	399	59801859	-	NGO1521	-	putative acetate kinase
1387	 49.43	0	1493757..1494545	-	262	59801860	-	NGO1524	-	hypothetical protein
1388	 54.40	0	1494697..1495845	-	382	59801861	-	NGO1525	-	methylcitrate synthase
1389	 52.45	0	1495930..1496808	-	292	59801862	prpB	NGO1526	-	2-methylisocitrate lyase
1390	 53.85	0	1497426..1498736	-	436	59801863	-	NGO1527	-	hypothetical protein
1391	 52.67	0	1498872..1500050	-	392	59801864	-	NGO1528	-	cell division protein FtsZ
1392	 52.45	0	1500169..1501413	-	414	59801865	-	NGO1529	-	hypothetical protein
1393	 53.50	0	1501499..1502227	-	242	59801866	-	NGO1530	-	hypothetical protein
1394	 53.11	0	1502217..1503131	-	304	59801867	ddl	NGO1531	-	D-alanine--D-alanine ligase
1395	 55.67	0	1503243..1504652	-	469	161572972	murC	NGO1532	-	UDP-N-acetylmuramate--L-alanine ligase
1396	 59.08	0	1504807..1505874	-	355	59801869	-	NGO1533	-	hypothetical protein
1397	 53.58	0	1505878..1507176	-	432	59801870	-	NGO1534	-	hypothetical protein
1398	 56.58	0	1507328..1508665	-	445	59801871	murD	NGO1535	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
1399	 51.97	0	1508750..1509130	-	126	59801872	-	NGO1536	-	hypothetical protein
1400	 55.22	0	1509255..1510337	-	360	59801873	mraY	NGO1537	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
1401	 49.18	0	1510582..1510764	-	60	59801874	-	NGO1538	-	hypothetical protein
1402	 56.29	0	1510761..1512119	-	452	59801875	-	NGO1539	-	putative UDP-MurNAc-pentapeptide synthetase
1403	 48.45	0	1512244..1513890	-	548	59801876	-	NGO1540	-	Dca
1404	 57.27	0	1513913..1515391	-	492	59801877	murE	NGO1541	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
1405	 55.00	0	1515416..1517164	-	582	59801878	-	NGO1542	-	Pbp2
1406	 49.24	0	1517225..1517488	-	87	59801879	-	NGO1543	-	hypothetical protein
1407	 57.89	0	1517515..1518471	-	318	59801880	mraW	NGO1544	-	S-adenosyl-methyltransferase MraW
1408	 53.29	0	1518468..1518923	-	151	59801881	-	NGO1545	-	cell division protein MraZ
1409	 50.96	0	1519202..1520449	+	415	59801882	-	NGO1546	-	hypothetical protein
1410	 46.47	0	1520890..1521711	-	273	59801883	-	NGO1547	-	hypothetical protein
1411	 47.91	0	1521744..1522388	-	214	59801884	-	NGO1548	-	DsbA
1412	 51.49	0	1522391..1523260	-	289	59801885	-	NGO1549	-	hypothetical protein
1413	 59.19	0	1523360..1524856	-	498	59801886	-	NGO1550	-	hypothetical protein
1414	 46.73	0	1524870..1525526	-	218	59801887	-	NGO1551	-	hypothetical protein
1415	 55.53	0	1525688..1527205	+	505	59801888	-	NGO1552	-	putative sodium/proline symporter, proline permease
1416	 58.40	0	1532253..1532615	-	120	59801889	-	NGO1556	-	hypothetical protein
1417	 59.29	+1	1532654..1532992	+	112	59801890	-	NGO1557	-	hypothetical protein
1418	 57.99	0	1533130..1533348	-	72	59801891	-	NGO1558	-	hypothetical protein
1419	 62.54	+1	1533468..1534145	+	225	59801892	-	NGO1559	-	hypothetical protein
1420	 53.06	0	1534233..1534379	+	48	59801893	-	NGO1560	-	hypothetical protein
1421	 55.90	0	1534419..1535189	-	256	59801894	-	NGO1561	-	putative exodeoxyribonuclease III
1422	 53.55	0	1535249..1535530	-	93	59801895	-	NGO1562	-	ArsR family transcriptional regulator
1423	 36.02	-2	1535587..1535772	+	61	59801896	-	NGO1563	-	hypothetical protein
1424	 53.97	0	1535783..1536034	+	83	59801897	-	NGO1564	-	hypothetical protein
1425	 63.04	+1	1536265..1537146	-	293	59801898	-	NGO1565	-	putative nicotinate-nucleotide pyrophosphorylase
1426	 60.92	+1	1537222..1538160	-	312	59801899	-	NGO1566	-	hypothetical protein
1427	 59.12	0	1538362..1539474	+	370	59801900	-	NGO1567	-	quinolinate synthetase
1428	 61.90	+1	1539526..1541034	+	502	59801901	-	NGO1568	-	hypothetical protein
1429	 54.50	0	1547577..1549253	+	558	59801902	-	NGO1573	-	putative ABC transporter ATP-binding protein
1430	 54.32	0	1549313..1549798	-	161	59801903	-	NGO1574	-	hypothetical protein
1431	 54.96	0	1549791..1550747	-	318	59801904	-	NGO1575	-	thiamine monophosphate kinase
1432	 47.27	0	1551327..1551491	+	54	59801905	-	NGO1576	-	hypothetical protein
1433	 52.32	0	1551522..1552232	-	236	59801906	-	NGO1577	-	Omp3
1434	 52.58	0	1552596..1553546	+	316	59801907	-	NGO1578	-	transcriptional regulator CysB-like protein
1435	 52.52	0	1553659..1554393	-	244	59801908	-	NGO1579	-	putative anaerobic transcriptional regulator
1436	 54.29	0	1554528..1555949	+	473	59801909	-	NGO1580	-	coproporphyrinogen III oxidase
1437	 53.59	0	1556189..1557763	-	524	59801910	-	NGO1581	-	putative transport protein
1438	 50.00	0	1557793..1557990	+	65	59801911	-	NGO1582	-	hypothetical protein
1439	 60.04	+1	1558058..1559188	+	376	59801912	anmK	NGO1583	-	anhydro-N-acetylmuramic acid kinase
1440	 59.98	+1	1559307..1560248	+	313	59801913	-	NGO1584	-	MafA3
1441	 54.25	0	1560252..1561982	+	576	59801914	-	NGO1585	-	MafB4
1442	 34.40	-2	1561960..1562241	+	93	59801915	-	NGO1586	-	hypothetical protein
1443	 25.18	-2	1562941..1563357	+	138	59801916	-	NGO1588	-	hypothetical protein
52.66	MEAN

6.57	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.