IslandPath Analysis: Neisseria gonorrhoeae FA 1090



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.66   STD DEV: 6.57
Neisseria gonorrhoeae FA 1090, complete genome - 1..2153922
2002 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1304	 55.01	0	1397102..1397710	+	202	59801777	-	NGO1434	-	putative ABC transporter, ATP-binding protein
1305	 29.35	-2	1397890..1398516	+	208	59801778	-	NGO1435	-	CadB
1306	 59.63	+1	1399954..1402143	-	729	59801779	-	NGO1437	-	primosome assembly protein PriA
1307	 55.09	0	1402283..1403068	+	261	59801780	-	NGO1438	-	hypothetical protein
1308	 55.25	0	1403167..1405101	-	644	59801781	-	NGO1439	-	putative ABC transporter, ATP-binding protein
1309	 55.47	0	1405167..1406345	-	392	59801782	-	NGO1440	-	putative ABC transporter, periplasmic protein
1310	 52.31	0	1406571..1406960	+	129	59801783	-	NGO1441	-	putative type IV pilin protein
1311	 56.48	0	1407240..1408280	+	346	161572973	-	NGO1442	-	alcohol dehydrogenase
1312	 59.81	+1	1408581..1412066	-	1161	59801785	-	NGO1443	-	hypothetical protein
1313	 50.56	0	1412050..1412229	+	59	59801786	-	NGO1444	-	hypothetical protein
1314	 44.69	-1	1412494..1413162	+	222	59801787	-	NGO1445	-	hypothetical protein
1315	 54.12	0	1413134..1413619	+	161	59801788	-	NGO1446	-	hypothetical protein
1316	 57.72	0	1413742..1413864	+	40	59801789	-	NGO1447	-	hypothetical protein
1317	 55.74	0	1413828..1414550	+	240	59801790	-	NGO1448	-	UDP-2,3-diacylglucosamine hydrolase
1318	 53.94	0	1414819..1416405	+	528	59801791	-	NGO1449	-	LctP
1319	 56.86	0	1416571..1416774	-	67	59801792	-	NGO1450	-	hypothetical protein
1320	 58.23	0	1416890..1417387	+	165	59801793	-	NGO1451	-	hypothetical protein
1321	 50.71	0	1417469..1418659	+	396	59801794	-	NGO1452	-	aromatic amino acid aminotransferase
1322	 54.43	0	1419715..1421226	-	503	59801795	lysS	NGO1454	-	lysyl-tRNA synthetase
1323	 55.10	0	1421381..1422634	-	417	59801796	-	NGO1455	-	hypothetical protein
1324	 61.44	+1	1423093..1424889	+	598	59801797	-	NGO1456	-	putative aminopeptidase
1325	 53.48	0	1425019..1425291	+	90	59801798	-	NGO1457	-	hypothetical protein
1326	 53.33	0	1425288..1425692	+	134	59801799	-	NGO1458	-	hypothetical protein
1327	 56.59	0	1425714..1425971	+	85	59801800	-	NGO1459	-	hypothetical protein
1328	 55.00	0	1425993..1426172	+	59	59801801	-	NGO1460	-	hypothetical protein
1329	 56.17	0	1426490..1427032	-	180	59801802	-	NGO1461	-	hypothetical protein
1330	 58.40	0	1427071..1427433	+	120	59801803	-	NGO1462	-	hypothetical protein
1331	 50.56	0	1427461..1427640	+	59	59801804	-	NGO1463	-	hypothetical protein
1332	 48.79	0	1428738..1429151	-	137	59801805	-	NGO1465	-	hypothetical protein
1333	 58.32	0	1429169..1430749	-	526	59801806	purH	NGO1466	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
1334	 58.88	0	1430910..1432052	-	380	59801807	-	NGO1467	-	hypothetical protein
1335	 53.84	0	1432197..1433030	-	277	59801808	-	NGO1468	-	hypothetical protein
1336	 47.29	0	1433076..1433204	+	42	59801809	-	NGO1469	-	hypothetical protein
1337	 58.61	0	1433319..1434857	+	512	59801810	pntA	NGO1470	-	NAD(P) transhydrogenase subunit alpha
1338	 57.29	0	1434861..1435244	+	127	59801811	-	NGO1471	-	hypothetical protein
1339	 55.12	0	1435324..1436709	+	461	59801812	pntB	NGO1472	-	pyridine nucleotide transhydrogenase
1340	 47.84	0	1436917..1437495	-	192	59801813	-	NGO1473	-	MdaB
1341	 49.45	0	1437734..1438645	+	303	59801814	-	NGO1474	-	LysR family transcriptional regulator
1342	 46.39	0	1439310..1439669	-	119	59801815	-	NGO1475	-	hypothetical protein
1343	 48.64	0	1439690..1440205	-	171	59801816	-	NGO1476	-	hypothetical protein
1344	 42.68	-1	1440881..1441126	-	81	59801817	-	NGO1478	-	hypothetical protein
1345	 48.10	0	1441350..1441979	-	209	59801818	-	NGO1479	-	hypothetical protein
1346	 42.91	-1	1443640..1444422	-	260	59801819	-	NGO1481	-	hypothetical protein
1347	 43.52	-1	1444410..1445057	-	215	59801820	-	NGO1482	-	hypothetical protein
1348	 44.18	-1	1445067..1446209	-	380	59801821	-	NGO1483	-	8-amino-7-oxononanoate synthase
1349	 53.67	0	1446432..1447508	+	358	59801822	-	NGO1484	-	hypothetical protein
1350	 50.44	0	1447712..1449178	-	488	59801823	-	NGO1485	-	hypothetical protein
1351	 53.25	0	1449376..1450299	-	307	59801824	-	NGO1486	-	agmatinase
1352	 49.45	0	1450398..1452290	-	630	59801825	-	NGO1487	-	arginine decarboxylase
1353	 50.18	0	1452457..1452741	-	94	59801826	-	NGO1488	-	hypothetical protein
1354	 53.77	0	1452891..1454441	-	516	59801827	-	NGO1489	-	aspartyl-tRNA synthetase
1355	 58.82	0	1454443..1454697	-	84	59801828	-	NGO1490	-	putative aspartyl-tRNA synthetase
1356	 52.57	0	1454755..1455492	-	245	59801829	-	NGO1491	-	hypothetical protein
1357	 53.96	0	1455598..1456746	-	382	59801830	-	NGO1492	-	putative phospholipase
1358	 53.79	0	1456906..1457169	-	87	59801831	rpsT	NGO1493	-	30S ribosomal protein S20
1359	 54.68	0	1457473..1458615	+	380	59801832	-	NGO1494	-	putative ABC transporter, periplasmic binding protein, polyamine
1360	 54.55	0	1460228..1462966	-	912	59801833	-	NGO1495	-	TbpA
1361	 47.59	0	1463053..1465164	-	703	59801834	-	NGO1496	-	TbpB
1362	 55.56	0	1465247..1465390	-	47	59801835	-	NGO1497	-	hypothetical protein
1363	 53.09	0	1465500..1465661	-	53	59801836	-	NGO1498	-	hypothetical protein
1364	 50.99	0	1467069..1468178	+	369	59801837	-	NGO1499	-	hypothetical protein
1365	 55.47	0	1468907..1469719	-	270	59801838	-	NGO1500	-	glutamate racemase
1366	 60.17	+1	1469908..1470369	+	153	59801839	-	NGO1501	-	hypothetical protein
1367	 60.97	+1	1470318..1471616	+	432	59801840	-	NGO1502	-	putative amidase
1368	 45.36	-1	1471644..1472516	+	290	59801841	-	NGO1503	-	hypothetical protein
1369	 59.32	+1	1472562..1473704	-	380	59801842	-	NGO1504	-	hypothetical protein
1370	 56.26	0	1473753..1474175	-	140	59801843	-	NGO1505	-	hypothetical protein
1371	 60.00	+1	1474168..1474977	-	269	59801844	-	NGO1506	-	putative NTP pyrophosphohydrolase
1372	 56.08	0	1475059..1475436	-	125	59801845	-	NGO1507	-	putative acyl-carrier protein synthase
1373	 58.98	0	1475486..1476214	-	242	59801846	-	NGO1508	-	pyridoxal phosphate biosynthetic protein PdxJ
1374	 60.48	+1	1476267..1477010	-	247	59801847	-	NGO1509	-	hypothetical protein
1375	 59.40	+1	1477047..1478174	-	375	59801848	-	NGO1510	-	putative chorismate mutase
1376	 58.95	0	1477747..1479249	-	500	59801849	-	NGO1511	-	putative drug resistance protein
1377	 59.59	+1	1479533..1480408	-	291	59801850	-	NGO1512	-	hypothetical protein
1378	 51.97	0	1481445..1482281	+	278	59801851	-	NGO1513	-	OpaD
1379	 59.67	+1	1482948..1483862	-	304	59801852	-	NGO1514	-	hypothetical protein
1380	 61.51	+1	1483845..1484717	+	290	59801853	-	NGO1515	-	putative oxidoreductase
1381	 57.44	0	1484775..1485977	-	400	59801854	-	NGO1516	-	hypothetical protein
1382	 57.45	0	1485974..1486342	-	122	59801855	-	NGO1517	-	hypothetical protein
1383	 55.68	0	1486339..1487112	-	257	59801856	-	NGO1518	-	hypothetical protein
1384	 58.33	0	1486516..1486959	+	147	59801857	-	NGO1519	-	hypothetical protein
1385	 55.32	0	1487121..1487825	-	234	59801858	-	NGO1520	-	hypothetical protein
1386	 57.50	0	1487852..1489051	-	399	59801859	-	NGO1521	-	putative acetate kinase
1387	 49.43	0	1493757..1494545	-	262	59801860	-	NGO1524	-	hypothetical protein
1388	 54.40	0	1494697..1495845	-	382	59801861	-	NGO1525	-	methylcitrate synthase
1389	 52.45	0	1495930..1496808	-	292	59801862	prpB	NGO1526	-	2-methylisocitrate lyase
1390	 53.85	0	1497426..1498736	-	436	59801863	-	NGO1527	-	hypothetical protein
1391	 52.67	0	1498872..1500050	-	392	59801864	-	NGO1528	-	cell division protein FtsZ
1392	 52.45	0	1500169..1501413	-	414	59801865	-	NGO1529	-	hypothetical protein
1393	 53.50	0	1501499..1502227	-	242	59801866	-	NGO1530	-	hypothetical protein
1394	 53.11	0	1502217..1503131	-	304	59801867	ddl	NGO1531	-	D-alanine--D-alanine ligase
1395	 55.67	0	1503243..1504652	-	469	161572972	murC	NGO1532	-	UDP-N-acetylmuramate--L-alanine ligase
1396	 59.08	0	1504807..1505874	-	355	59801869	-	NGO1533	-	hypothetical protein
1397	 53.58	0	1505878..1507176	-	432	59801870	-	NGO1534	-	hypothetical protein
1398	 56.58	0	1507328..1508665	-	445	59801871	murD	NGO1535	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
1399	 51.97	0	1508750..1509130	-	126	59801872	-	NGO1536	-	hypothetical protein
1400	 55.22	0	1509255..1510337	-	360	59801873	mraY	NGO1537	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
1401	 49.18	0	1510582..1510764	-	60	59801874	-	NGO1538	-	hypothetical protein
1402	 56.29	0	1510761..1512119	-	452	59801875	-	NGO1539	-	putative UDP-MurNAc-pentapeptide synthetase
1403	 48.45	0	1512244..1513890	-	548	59801876	-	NGO1540	-	Dca
52.66	MEAN

6.57	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.