IslandPath Analysis: Neisseria gonorrhoeae FA 1090



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.66   STD DEV: 6.57
Neisseria gonorrhoeae FA 1090, complete genome - 1..2153922
2002 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1218	 58.22	0	1300531..1301868	-	445	59801691	-	NGO1341	-	MrsA
1219	 60.23	+1	1301995..1302849	-	284	59801692	-	NGO1342	-	DHPS
1220	 57.38	0	1302989..1303882	-	297	59801693	-	NGO1343	-	hypothetical protein
1221	 56.35	0	1303973..1306075	+	700	59801694	-	NGO1344	-	hypothetical protein
1222	 56.46	0	1306139..1307617	-	492	59801695	-	NGO1345	-	hypothetical protein
1223	 51.74	0	1307637..1308152	-	171	59801696	-	NGO1346	-	hypothetical protein
1224	 53.51	0	1308159..1308500	-	113	59801697	-	NGO1347	-	hypothetical protein
1225	 45.83	-1	1308544..1308711	-	55	59801698	-	NGO1348	-	hypothetical protein
1226	 59.47	+1	1308789..1309538	-	249	59801699	-	NGO1349	-	hypothetical protein
1227	 58.91	0	1309781..1310347	+	188	59801700	-	NGO1350	-	hypothetical protein
1228	 60.80	+1	1311101..1312243	+	380	59801701	-	NGO1352	-	putative 3-oxoacyl-(acyl-carrier-protein) synthase
1229	 45.88	-1	1312530..1313294	+	254	59801702	-	NGO1353	-	hypothetical protein
1230	 48.36	0	1313295..1314359	+	354	59801703	-	NGO1354	-	RfaK
1231	 51.35	0	1314593..1315930	+	445	59801704	-	NGO1355	-	putative sodium dependent ion transport protein
1232	 53.58	0	1317126..1317920	-	264	59801705	thyA	NGO1357	-	thymidylate synthase
1233	 56.93	0	1318344..1319678	+	444	59801706	-	NGO1358	-	glutamate dehydrogenase
1234	 47.84	0	1319675..1319929	-	84	59801707	-	NGO1359	-	hypothetical protein
1235	 53.46	0	1319917..1320696	-	259	59801708	-	NGO1360	-	GntR family transcriptional regulator
1236	 52.78	0	1320974..1321261	+	95	59801709	-	NGO1361	-	hypothetical protein
1237	 51.33	0	1321289..1321438	+	49	59801710	-	NGO1362	-	hypothetical protein
1238	 56.20	0	1321639..1323042	-	467	59801711	-	NGO1363	-	hypothetical protein
1239	 54.09	0	1323095..1326298	-	1067	59801712	-	NGO1364	-	antibiotic resistance efflux pump component
1240	 58.43	0	1326310..1327548	-	412	59801713	-	NGO1365	-	antibiotic resistance efflux pump component
1241	 51.66	0	1327798..1328430	+	210	59801714	-	NGO1366	-	mtrCDE transcriptional regulator, repressor
1242	 28.68	-2	1328523..1328780	-	85	59801715	-	NGO1367	-	hypothetical protein
1243	 48.37	0	1329067..1330635	+	522	59801716	-	NGO1368	-	antibiotic resistance efflux pump component
1244	 56.28	0	1330703..1333909	-	1068	59801717	-	NGO1369	-	putative exodeoxyribonuclease V
1245	 53.55	0	1334010..1335419	-	469	59801718	-	NGO1370	-	hypothetical protein
1246	 50.61	0	1335763..1337082	-	439	59801719	-	NGO1371	-	CcoP
1247	 39.18	-2	1337106..1337276	-	56	59801720	-	NGO1372	-	hypothetical protein
1248	 52.29	0	1337281..1337892	-	203	59801721	-	NGO1373	-	CcoO
1249	 51.66	0	1337919..1339364	-	481	59801722	-	NGO1374	-	CcoN
1250	 51.29	0	1339678..1341426	+	582	59801723	-	NGO1375	-	hypothetical protein
1251	 55.98	0	1341452..1341919	+	155	59801724	-	NGO1376	-	hypothetical protein
1252	 51.72	0	1342420..1342854	-	144	59801725	-	NGO1377	-	hypothetical protein
1253	 54.43	0	1342857..1343567	-	236	59801726	-	NGO1378	-	ExbB
1254	 57.86	0	1343585..1344436	-	283	59801727	-	NGO1379	-	TonB
1255	 56.18	0	1344692..1345330	+	212	59801728	-	NGO1380	-	hypothetical protein
1256	 50.00	0	1345402..1346043	-	213	59801729	-	NGO1381	-	glutaredoxin 2
1257	 58.27	0	1346186..1348399	+	737	59801730	-	NGO1382	-	putative GTP pyrophosphokinase
1258	 36.51	-2	1348463..1348840	-	125	59801731	-	NGO1383	-	hypothetical protein
1259	 33.95	-2	1348909..1349394	-	161	59801732	-	NGO1384	-	hypothetical protein
1260	 44.44	-1	1349345..1349974	-	209	59801733	-	NGO1385	-	hypothetical protein
1261	 45.25	-1	1350801..1351505	-	234	59801734	-	NGO1386	-	hypothetical protein
1262	 35.17	-2	1351641..1352183	-	180	59801735	-	NGO1387	-	hypothetical protein
1263	 34.65	-2	1352310..1352537	-	75	59801736	-	NGO1388	-	hypothetical protein
1264	 32.10	-2	1352596..1352919	-	107	59801737	-	NGO1389	-	hypothetical protein
1265	 37.29	-2	1352909..1353262	-	117	59801738	-	NGO1390	-	hypothetical protein
1266	 38.62	-2	1353559..1354107	-	182	59801739	-	NGO1391	-	hypothetical protein
1267	 54.29	0	1354097..1355914	-	605	59801740	-	NGO1392	-	MafB3
1268	 59.98	+1	1355918..1356859	-	313	59801741	-	NGO1393	-	MafA2
1269	 55.81	0	1356999..1357652	-	217	59801742	-	NGO1394	-	IS1016 transposase
1270	 48.80	0	1357719..1358300	+	193	59801743	-	NGO1395	-	hypothetical protein
1271	 53.45	0	1358282..1360090	+	602	59801744	-	NGO1396	-	putative electron transfer flavoprotein-ubiquinone oxidoreductase
1272	 52.73	0	1360224..1360718	-	164	59801745	-	NGO1397	-	NosL
1273	 54.99	0	1360715..1361545	-	276	59801746	-	NGO1398	-	hypothetical protein
1274	 58.14	0	1361542..1362468	-	308	59801747	-	NGO1399	-	putative ABC transporter, ATP-binding protein
1275	 54.65	0	1368673..1369920	-	415	59801748	hemA	NGO1403	-	glutamyl-tRNA reductase
1276	 56.59	0	1370073..1370459	-	128	59801749	-	NGO1404	-	glycine cleavage system protein H
1277	 44.44	-1	1370511..1371050	-	179	59801750	-	NGO1405	-	hypothetical protein
1278	 55.59	0	1371197..1372297	-	366	59801751	gcvT	NGO1406	-	glycine cleavage system aminomethyltransferase T
1279	 51.55	0	1372809..1373291	+	160	59801752	-	NGO1407	-	AsnC family transcriptional regulator
1280	 50.50	0	1373338..1373943	+	201	59801753	-	NGO1408	-	hypothetical protein
1281	 56.39	0	1373940..1374299	+	119	59801754	-	NGO1410	-	hypothetical protein
1282	 54.62	0	1374586..1376079	+	497	59801755	-	NGO1411	-	hypothetical protein
1283	 55.05	0	1376153..1376806	-	217	59801756	-	NGO1412	-	IS1016 transposase
1284	 53.94	0	1377044..1378387	+	447	59801757	-	NGO1413	-	Na(+)-translocating NADH-quinone reductase subunit A
1285	 54.91	0	1378390..1379622	+	410	59801758	-	NGO1414	-	Na(+)-translocating NADH-quinone reductase subunit B
1286	 53.80	0	1379615..1380391	+	258	59801759	-	NGO1415	-	Na(+)-translocating NADH-quinone reductase subunit C
1287	 52.15	0	1380391..1381017	+	208	59801760	-	NGO1416	-	Na(+)-translocating NADH-quinone reductase subunit D
1288	 50.00	0	1381021..1381614	+	197	59801761	-	NGO1417	-	Na(+)-translocating NADH-quinone reductase subunit E
1289	 52.63	0	1381628..1382845	+	405	59801762	-	NGO1418	-	Na(+)-translocating NADH-quinone reductase subunit F
1290	 42.86	-1	1383027..1383194	+	55	59801763	-	NGO1419	-	hypothetical protein
1291	 52.08	0	1383362..1384417	+	351	59801764	-	NGO1420	-	hypothetical protein
1292	 50.46	0	1384443..1384658	+	71	59801765	-	NGO1421	-	hypothetical protein
1293	 54.06	0	1384782..1385360	-	192	59801766	-	NGO1422	-	putative heat shock protein
1294	 56.41	0	1385543..1386361	+	272	59801767	-	NGO1423	-	hypothetical protein
1295	 54.83	0	1386565..1388076	-	503	59801768	ubiB	NGO1424	-	putative ubiquinone biosynthesis protein UbiB
1296	 46.61	0	1388728..1389066	-	112	59801769	-	NGO1426	-	iron-sulfur cluster insertion protein ErpA
1297	 46.41	0	1389199..1389909	-	236	59801770	-	NGO1427	-	putative transcriptional regulator, repressor
1298	 44.69	-1	1390072..1390344	+	90	59801771	-	NGO1428	-	hypothetical protein
1299	 51.06	0	1390552..1392480	+	642	59801772	dnaK	NGO1429	-	molecular chaperone DnaK
1300	 52.16	0	1392703..1393950	+	415	59801773	-	NGO1430	-	hypothetical protein
1301	 55.41	0	1393922..1394623	+	233	59801774	-	NGO1431	-	hypothetical protein
1302	 53.07	0	1394680..1395657	+	325	59801775	-	NGO1432	-	hypothetical protein
1303	 54.84	0	1396210..1396911	+	233	59801776	-	NGO1433	-	putative ABC transporter, permease protein
1304	 55.01	0	1397102..1397710	+	202	59801777	-	NGO1434	-	putative ABC transporter, ATP-binding protein
1305	 29.35	-2	1397890..1398516	+	208	59801778	-	NGO1435	-	CadB
1306	 59.63	+1	1399954..1402143	-	729	59801779	-	NGO1437	-	primosome assembly protein PriA
1307	 55.09	0	1402283..1403068	+	261	59801780	-	NGO1438	-	hypothetical protein
1308	 55.25	0	1403167..1405101	-	644	59801781	-	NGO1439	-	putative ABC transporter, ATP-binding protein
1309	 55.47	0	1405167..1406345	-	392	59801782	-	NGO1440	-	putative ABC transporter, periplasmic protein
1310	 52.31	0	1406571..1406960	+	129	59801783	-	NGO1441	-	putative type IV pilin protein
1311	 56.48	0	1407240..1408280	+	346	161572973	-	NGO1442	-	alcohol dehydrogenase
1312	 59.81	+1	1408581..1412066	-	1161	59801785	-	NGO1443	-	hypothetical protein
1313	 50.56	0	1412050..1412229	+	59	59801786	-	NGO1444	-	hypothetical protein
1314	 44.69	-1	1412494..1413162	+	222	59801787	-	NGO1445	-	hypothetical protein
1315	 54.12	0	1413134..1413619	+	161	59801788	-	NGO1446	-	hypothetical protein
1316	 57.72	0	1413742..1413864	+	40	59801789	-	NGO1447	-	hypothetical protein
1317	 55.74	0	1413828..1414550	+	240	59801790	-	NGO1448	-	UDP-2,3-diacylglucosamine hydrolase
52.66	MEAN

6.57	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.